Brett G. Olivier

Vrije Universiteit Amsterdam

H指数:29

被引数:4,042

浏览量:0

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From FAIR to CURE: guidelines for computational models of biological systems

从FAIR到CURE：生物系统计算模型的指南

npj Systems Biology and Applications

IF3.5

2026-03-270

OAAI

Herbert M. Sauro; Eran Agmon; Michael L. Blinov; John H. Gennari; Joseph L. Hellerstein; Adel Heydarabadipour; Bartholomew E. Jardine; Elebeoba May; David P. Nickerson; Lucian P. Smith; Gary D. Bader; Frank T. Bergmann; Patrick M. Boyle; Andreas Dräger; James R. Faeder; Song Feng; Juliana Freire; Fabian Fröhlich; James A. Glazier; Thomas E. Gorochowski; Tomas Helikar; Henning Hermjakob; Stefan Hoops; Peter Hunter; Princess I. Imoukhuede; Sarah M. Keating; Matthias König; Reinhard Laubenbacher; Leslie M. Loew; Carlos F. Lopez; William W. Lytton; Rahuman S. Malik-Sheriff; Andrew McCulloch; Pedro Mendes; Lealem Mulugeta; Chris J. Myers; Jerry G. Myers Jr; Anna Niarakis; David D. van Niekerk; Brett G. Olivier; Alexander A. Patrie; Ellen M. Quardokus; Nicole Radde; Johann M. Rohwer; Sven Sahle; James C. Schaff; Falk Schreiber; T. J. Sego; Janis Shin; Jacky L. Snoep; Rajanikanth Vadigepalli; H. Steven Wiley; Dagmar Waltemath; Ion I. Moraru

ShareTrait: Towards interoperable and reusable individual trait-based data in ectotherms

ShareTrait：面向外温动物基于个体性状数据的互操作性与可重用性

Functional Ecology

IF5.1

2025-09-120

OAAI

Félix P. Leiva; Jacintha Ellers; Matty P. Berg; Raimon Cuxart-Erruz; Diego R. Barneche; Tim M. Blackburn; Luis E. Castañeda; Steven L. Chown; Juan Diego Gaitán-Espitia; Paulina Gebauer; Daniel F. Gomez Isaza; Ian C. W. Hardy; Adam Hermaniuk; Andrew G. Hirst; Sarah Jorissen; Tamar Keasar; Joris M. Koene; Cécile Le Lann; Irene Martorelli; Carlos Molinet; Edwin J. Niklitschek; Brunno F. Oliveira; Brett Olivier; Germán Orizaola; Natalie Pilakouta; K. S. Shameer; Milad Shokri; Robby Stoks; Kevin Tougeron; Cristina Tuni; Iris L. E. van de Pol; Natalie E. van Dis; Bertanne Visser; Joost J. Vogels; Craig White; Nicholas C. Wu; Wilco C. E. P. Verberk

BioSimulators: a central registry of simulation engines and services for recommending specific tools

BioSimulators: 用于推荐特定工具的模拟引擎和服务的中央注册表

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-0713

OAAI

Shaikh, Bilal; Smith, Lucian P.; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S.; Anwar, Azraf; Beber, Moritz E.; Bergmann, Frank T.; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G. Bard; Faeder, James R.; Freiburger, Andrew P.; Frohlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L.; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C.; Jahn, Diego; Jakubowski, Henry, V; Jordan, Ryann; Kalas, Matus; Koenig, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J. Kyle; Mendes, Pedro; Mueller, Robert; Myers, Chris J.; Naldi, Aurelien; Nguyen, Tung V. N.; Nickerson, David P.; Olivier, Brett G.; Patoliya, Drashti; Pauleve, Loic; Petzold, Linda R.; Priya, Ankita; Rampadarath, Anand K.; Rohwer, Johann M.; Saglam, Ali S.; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruss, Joern; Thomas, Payton J.; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P.; Schaff, James C.; Blinov, Michael L.; Sauro, Herbert M.; Moraru, Ion I.; Karr, Jonathan R.

Inspecting the Solution Space of Genome-Scale Metabolic Models

METABOLITES

IF3.7

2022-01-054

OAAI

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers (vol 4, 530, 2021)

COMMUNICATIONS BIOLOGY

IF5.1

2021-06-180

OAAI

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers

少数主要消费者维持了降解苯的硝酸盐还原文化中的高生物多样性

COMMUNICATIONS BIOLOGY

IF5.1

2021-05-0513

OAAI

Protein cost allocation explains metabolic strategies in Escherichia coli

JOURNAL OF BIOTECHNOLOGY

IF3.9

2021-02-0110

OAAI

SBML Level 3: an extensible format for the exchange and reuse of biological models

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2020-08-26170

OAAI

Keating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael

MEMOTE for standardized genome-scale metabolic model testing (vol 38, pg 272, 2020)

标准化基因组规模代谢模型测试备忘录 (第38卷，272页，2020页)

NATURE BIOTECHNOLOGY

IF41.7

2020-03-193

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Sheriff, Rahuman S. Malik; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

MEMOTE for standardized genome-scale metabolic model testing

标准化基因组规模代谢模型测试备忘录

NATURE BIOTECHNOLOGY

IF41.7

2020-03-02283

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Malik Sheriff, Rahuman S.; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

A systematic assessment of current genome-scale metabolic reconstruction tools

当前基因组规模代谢重建工具的系统评估

GENOME BIOLOGY

IF9.4

2019-08-07150

OAAI

Harmonizing semantic annotations for computational models in biology

BRIEFINGS IN BIOINFORMATICS

IF7.7

2018-11-2138

OAAI

Probing the Genome-Scale Metabolic Landscape of Bordetella pertussis, the Causative Agent of Whooping Cough