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Greengenes2 unifies microbial data in a single reference tree (Jul, 10.1038/s41587-023-01845-1, 2023) Greengenes2将微生物数据统一在一个参考树中 (7月，10.1038/s41587-023-01845-1，2023) McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T.; Nicolaou, Giorgia; Parks, Donovan H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob 分享 收藏
Greengenes2 unifies microbial data in a single reference tree Greengenes2将微生物数据统一在一个参考树中 McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T. T.; Nicolaou, Giorgia; Parks, Donovan H. H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S. S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob 分享 收藏
Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism Tataru, Christine; Peras, Marie; Rutherford, Erica; Dunlap, Kaiti; Yin, Xiaochen; Chrisman, Brianna S.; DeSantis, Todd Z.; Wall, Dennis P.; Iwai, Shoko; David, Maude M. 分享 收藏
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Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease 通过多技术荟萃分析确定炎症性肠病的菌株水平和综合微生物组分析确定疾病的关键细菌影响因素 Ravichandar, Jayamary Divya; Rutherford, Erica; Chow, Cheryl-Emiliane T.; Han, Andrew; Yamamoto, Mitsuko Lynn; Narayan, Nicole; Kaplan, Gilaad G.; Beck, Paul L.; Claesson, Marcus J.; Dabbagh, Karim; Iwai, Shoko; DeSantis, Todd Z. 分享 收藏
Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups West, Kiana A.; Yin, Xiaochen; Rutherford, Erica M.; Wee, Brendan; Choi, Jinlyung; Chrisman, Brianna S.; Dunlap, Kaiti L.; Hannibal, Roberta L.; Hartono, Wiputra; Lin, Michelle; Raack, Edward; Sabino, Kayleen; Wu, Yonggan; Wall, Dennis P.; David, Maude M.; Dabbagh, Karim; DeSantis, Todd Z.; Iwai, Shoko 分享 收藏
Development and validation of a novel T-cell modulating, microbiome-based peptide for combination with immunotherapy Lin, Michelle; Nagaraja, Archana S.; Haria, Dhwani; Katlinskaya, Yuliya; Ravichandar, Divya; Williams, Preston; Hannibal, Roberta; DeSantis, Todd Z.; Hwang, Bum-Yeol; Wilcoxon, Michi; Takeuchi, Toshi; Dabbagh, Karim; Lal, Preeti; Kiefel, Helena 分享 收藏
A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data Yin, Xiaochen; Altman, Tomer; Rutherford, Erica; West, Kiana A.; Wu, Yonggan; Choi, Jinlyung; Beck, Paul L.; Kaplan, Gilead G.; Dabbagh, Karim; DeSantis, Todd Z.; Iwai, Shoko 分享 收藏
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease Ryan, F. J.; Ahern, A. M.; Fitzgerald, R. S.; Laserna-Mendieta, E. J.; Power, E. M.; Clooney, A. G.; O'Donoghue, K. W.; McMurdie, P. J.; Iwai, S.; Crits-Christoph, A.; Sheehan, D.; Moran, C.; Flemer, B.; Zomer, A. L.; Fanning, A.; O'Callaghan, J.; Walton, J.; Temko, A.; Stack, W.; Jackson, L.; Joyce, S. A.; Melgar, S.; DeSantis, T. Z.; Bell, J. T.; Shanahan, F.; Claesson, M. J. 分享 收藏
Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences (vol 21, 56, 2020) Narayan, Nicole R.; Weinmaier, Thomas; Laserna-Mendieta, Emilio J.; Claesson, Marcus J.; Shanahan, Fergus; Dabbagh, Karim; Iwai, Shoko; DeSantis, Todd Z. 分享 收藏
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Novel microbiome-derived peptides activate the host innate immune system by regulation of TLR signaling Haria, Dhwani; Kiefel, Helena; Katlinskaya, Yuliya; Jain, Sunit; Weinmaier, Thomas; Iwai, Shoko; DeSantis, Todd; Takeuchi, Toshi; Dabbagh, Karim; Graham, Kareem 分享 收藏
A novel intestinal microbiome-derived peptide modulates immune cell activity and the tumor microenvironment Kiefel, Helena; Haria, Dhwani; Katlinskaya, Yuliya; Ravichandar, Divya; McLaughlin, Lily; Jain, Sunit; Weinmaier, Thomas; Iwai, Shoko; DeSantis, Todd; Takeuchi, Toshi; Dabbagh, Karim; Graham, Kareem 分享 收藏
A novel intestinal microbiome-derived peptide modulates host T cell activation Katlinskaya, Yuliya V.; Haria, Dhwani; McLaughlin, Lily; Jain, Sunit; Lwai, Shoko; DeSantis, Todd; Weinmaier, Thomas; Takeuchi, Toshi; Hoey, Anu; Dabbagh, Karim; Graham, Kareem; Kiefel, Helena 分享 收藏
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An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile Miezeiewski, Matthew; Schnaufer, Todd; Muravsky, Michele; Wang, Su; Caro-Aguilar, Ivette; Secore, Susan; Thiriot, David S.; Hsu, Charlie; Rogers, Irene; DeSantis, Todd; Kuczynski, Justin; Probst, Alexander J.; Chehoud, Christel; Steger, Rachel; Warrington, Janet; Bodmer, Jean-Luc; Heinrichs, Jon H. 分享 收藏
Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata 珊瑚转录组和细菌群落概况揭示了faveolata中明显的黄带疾病状态 Closek, Collin J.; Sunagawa, Shinichi; DeSalvo, Michael K.; Piceno, Yvette M.; DeSantis, Todd Z.; Brodie, Eoin L.; Weber, Michele X.; Voolstra, Christian R.; Andersen, Gary L.; Medina, Monica 分享 收藏
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