未登录A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy用于新抗原发现的全面蛋白质基因组学流程，以推进个性化癌症免疫疗法
Huber, Florian; Arnaud, Marion; Stevenson, Brian J.; Michaux, Justine; Benedetti, Fabrizio; Thevenet, Jonathan; Bobisse, Sara; Chiffelle, Johanna; Gehert, Talita; Mueller, Markus; Pak, HuiSong; Kramer, Anne I.; Altimiras, Emma Ricart; Racle, Julien; Taillandier-Coindard, Marie; Muehlethaler, Katja; Auger, Aymeric; Saugy, Damien; Murgues, Baptiste; Benyagoub, Abdelkader; Gfeller, David; Laniti, Denarda Dangaj; Kandalaft, Lana; Rodrigo, Blanca Navarro; Bouchaab, Hasna; Tissot, Stephanie; Coukos, George; Harari, Alexandre; Bassani-Sternberg, Michal .png)
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收藏Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides基于免疫流行病学的天然呈递非规范circRNA衍生肽的鉴定Ferreira, Humberto J.; Stevenson, Brian J.; Pak, Huisong; Yu, Fengchao; Almeida Oliveira, Jessica; Huber, Florian; Taillandier-Coindard, Marie; Michaux, Justine; Ricart-Altimiras, Emma; Kraemer, Anne I.; Kandalaft, Lana E.; Speiser, Daniel E.; Nesvizhskii, Alexey I.; Mueller, Markus; Bassani-Sternberg, Michal 分享 收藏 Machine learning methods and harmonized datasets improve immunogenic neoantigen predictionMuller, Markus; Huber, Florian; Arnaud, Marion; Kraemer, Anne I.; Altimiras, Emma Ricart; Michaux, Justine; Taillandier-Coindard, Marie; Chiffelle, Johanna; Murgues, Baptiste; Gehret, Talita; Auger, Aymeric; Stevenson, Brian J.; Coukos, George; Harari, Alexandre; Bassani-Sternberg, Michal 分享 收藏 The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer与肺癌中T细胞浸润，炎症和免疫编辑相关的免疫肽组景观Kraemer, Anne I. .; Chong, Chloe; Huber, Florian; Pak, HuiSong; Stevenson, Brian J. J.; Mueller, Markus; Michaux, Justine; Altimiras, Emma Ricart; Rusakiewicz, Sylvie; Simo-Riudalbas, Laia; Planet, Evarist; Wiznerowicz, Maciej; Dagher, Julien; Trono, Didier; Coukos, George; Tissot, Stephanie; Bassani-Sternberg, Michal 分享 收藏 Ganglioglioma with adverse clinical outcome and atypical histopathological features were defined by alterations in PTPN11/KRAS/NF1 and other RAS-/MAP-Kinase pathway genes (vol 145, pg 815, 2023)Hoffmann, Lucas; Coras, Roland; Kobow, Katja; Lopez-Rivera, Javier A. A.; Lal, Dennis; Leu, Costin; Najm, Imad; Nuernberg, Peter; Herms, Jochen; Harter, Patrick N. N.; Bien, Christian G. G.; Kalbhenn, Thilo; Mueller, Markus; Pieper, Tom; Hartlieb, Till; Kudernatsch, Manfred; Hamer, Hajo; Brandner, Sebastian; Roessler, Karl; Bluemcke, Ingmar; Jabari, Samir 分享 收藏 Ganglioglioma with adverse clinical outcome and atypical histopathological features were defined by alterations in PTPN11/KRAS/NF1 and other RAS-/MAP-Kinase pathway genesHoffmann, Lucas; Coras, Roland; Kobow, Katja; Lopez-Rivera, Javier A.; Lal, Dennis; Leu, Costin; Najm, Imad; Nuernberg, Peter; Herms, Jochen; Harter, Patrick N.; Bien, Christian G.; Kalbhenn, Thilo; Mueller, Markus; Pieper, Tom; Hartlieb, Till; Kudernatsch, Manfred; Hamer, Hajo; Brandner, Sebastian; Roessler, Karl; Bluemcke, Ingmar; Jabari, Samir 分享 收藏 Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction通过利用可用的大规模多HLA光谱库，数据独立采集和MS/MS预测进行敏感的免疫抗体Pak, HuiSong; Michaux, Justine; Huber, Florian; Chong, Chloe; Stevenson, Brian J.; Muller, Markus; Coukos, George; Bassani-Sternberg, Michal 分享 收藏 分享 收藏 分享 收藏 Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9Plank, Michael; Perepelkina, Mariya; Mueller, Markus; Vaga, Stefania; Zou, Xiaoming; Bourgoint, Clelia; Berti, Marina; Saarbach, Jacques; Haesendonckx, Steven; Winssinger, Nicolas; Aebersold, Ruedi; Loewith, Robbie 分享 收藏 Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes集成的蛋白质基因组学深度测序和分析可准确识别肿瘤免疫多肽中的非规范肽Chong, Chloe; Mueller, Markus; Pak, HuiSong; Harnett, Dermot; Huber, Florian; Grun, Delphine; Leleu, Marion; Auger, Aymeric; Arnaud, Marion; Stevenson, Brian J.; Michaux, Justine; Bilic, Ilija; Hirsekorn, Antje; Calviello, Lorenzo; Simo-Riudalbas, Laia; Planet, Evarist; Lubinski, Jan; Bryskiewicz, Marta; Wiznerowicz, Maciej; Xenarios, Ioannis; Zhang, Lin; Trono, Didier; Harari, Alexandre; Ohler, Uwe; Coukos, George; Bassani-Sternberg, Michal 分享 收藏 分享 收藏 分享 收藏 Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-1 LigandomeMylonas, Roman; Beer, Ilan; Iseli, Christian; Chong, Chloe; Pak, Hui-Song; Gfeller, David; Coukos, George; Xenarios, Loannis; Muller, Markus; Bassani-Sternberg, Michal 分享 收藏 分享 收藏 Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE)Lill, Jennie R.; van Veelen, Peter A.; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E.; Heck, Albert J. R.; Marcilla, Miguel; Marino, Fabio; Mueller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizcaino, Juan Antonio; Bassani-Sternberg, Michal 分享 收藏 分享 收藏 分享 收藏 分享 收藏 Glycoforest 1.0Horlacher, Oliver; Jin, Chunsheng; Alocci, Davide; Mariethoz, Julien; Mueller, Markus; Karlsson, Niclas G.; Lisacek, Frederique 分享 收藏 
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