Allen Van Deynze - Publications, H-index & Citations

Allen Van Deynze

University of California

50H指数

161论文数

1.1W被引数

收录论文 56

发表时间

An inter-specific Amaranthus pangenome captures genetic variation potentially underlying key leafy vegetable traits in this underutilised crop 一个种间苋属泛基因组捕获了可能影响此类未充分利用作物关键叶类蔬菜性状的遗传变异

New Phytologist

IF8.1

2026-04-29

PREAI

Maud A.J. de Kinderen; Xiao Ma; Fabián E. Vaistij; Jiyang Chang; Tony Larson; Yi Li; Fekadu Dinssa; Chen-yu Lin; Tulsi Suchak; Samuel J. Smit; Daniel C. Jeffares; Allen Van Deynze; Willem S. Jansen van Rensburg; Abe S. Gerrano; Michael W. Bairu; Sonja L. Venter; Roland Schafleitner; Yves Van de Peer; Katherine Denby

Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance 将作物建模与传感技术整合到分子育种中，以提升营养品质和抗逆性

Theoretical and Applied Genetics

IF4.2

2025-08-08

OAAI

Jonathan Berlingeri; Abelina Fuentes; Earl Ranario; Heesup Yun; Ellen Y. Rim; Oscar Garrett; Alexander Howard; Mary-Francis LaPorte; Sassoum Lo; Duke Pauli; Jenna Hershberger; Mason Earles; Allen Van Deynze; Edward Charles Brummer; Richard Michelmore; Christopher Y. S. Wong; Troy S. Magney; Pamela C. Ronald; Daniel E. Runcie; Brian N. Bailey; Christine H. Diepenbrock

Dual transcriptional characterization of spinach and Peronospora effusa during resistant and susceptible race-cultivar interactions

BMC GENOMICS

IF3.7

2024-10-07

OAAI

Clark, Kelley J.; Feng, Chunda; Anchieta, Amy G.; Van Deynze, Allen; Correll, James C.; Klosterman, Steven J.

Identification of QTLs involved in destemming and fruit quality for mechanical harvesting of New Mexico pod-type green chile

FRONTIERS IN PLANT SCIENCE

IF4.8

2024-07-01

OAAI

Ortega, Franchesca; Hill, Theresa; Van Deynze, Allen; Garcia-Llanos, Armando; Walker, Stephanie

Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots

NATURE PLANTS

IF13.6

2023-09-28

OAAI

Coe, Kevin; Bostan, Hamed; Rolling, William; Turner-Hissong, Sarah; Macko-Podgorni, Alicja; Senalik, Douglas; Liu, Su; Seth, Romit; Curaba, Julien; Mengist, Molla Fentie; Grzebelus, Dariusz; Van Deynze, Allen; Dawson, Julie; Ellison, Shelby; Simon, Philipp; Iorizzo, Massimo

GRF-GIF chimeric proteins enhance in vitro regeneration and Agrobacterium-mediated transformation efficiencies of lettuce (Lactuca spp.)Grf-gif嵌合蛋白可增强生菜 (Lactuca spp。) 的体外再生和农杆菌介导的转化效率

PLANT CELL REPORTS

IF4.5

2023-01-25

OAAI

Bull, Tawni; Debernardi, Juan; Reeves, Megan; Hill, Theresa; Bertier, Lien; Van Deynze, Allen; Michelmore, Richard

The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae

PLANT CELL

IF11.6

2023-01-24

OAAI

Hoang, Nam, V; Sogbohossou, E. O. Deedi; Xiong, Wei; Simpson, Conor J. C.; Singh, Pallavi; Walden, Nora; van den Bergh, Erik; Becker, Frank F. M.; Li, Zheng; Zhu, Xin-Guang; Brautigam, Andrea; Weber, Andreas P. M.; van Haarst, Jan C.; Schijlen, Elio G. W. M.; Hendre, Prasad S.; Van Deynze, Allen; Achigan-Dako, Enoch G.; Hibberd, Julian M.; Schranz, M. Eric

High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers

HORTICULTURE RESEARCH

IF8.5

2022-09-19

OAAI

Lee, Joung-Ho; Venkatesh, Jelli; Jo, Jinkwan; Jang, Siyoung; Kim, Geon Woo; Kim, Jung-Min; Han, Koeun; Ro, Nayoung; Lee, Hea-Young; Kwon, Jin-Kyung; Kim, Yong-Min; Lee, Tae-Ho; Choi, Doil; Van Deynze, Allen; Hill, Theresa; Kfir, Nir; Freiman, Aviad; Olivas, Nelson H. Davila; Elkind, Yonatan; Paran, Ilan; Kang, Byoung-Cheorl

CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota)

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2022-09-07

OAAI

Rolling, William R.; Senalik, Douglas; Iorizzo, Massimo; Ellison, Shelby; Van Deynze, Allen; Simon, Philipp W.

Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication

PLANT GENOME

IF3.8

2022-07-27

OAAI

Chang, Jiyang; Marczuk-Rojas, Juan Pablo; Waterman, Carrie; Garcia-Llanos, Armando; Chen, Shiyu; Ma, Xiao; Hulse-Kemp, Amanda; Van Deynze, Allen; Van de Peer, Yves; Carretero-Paulet, Lorenzo

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

NATURE COMMUNICATIONS

IF15.7

2022-04-14

OAAI

Bredeson, Jessen, V; Lyons, Jessica B.; Oniyinde, Ibukun O.; Okereke, Nneka R.; Kolade, Olufisayo; Nnabue, Ikenna; Nwadili, Christian O.; Hribova, Eva; Parker, Matthew; Nwogha, Jeremiah; Shu, Shengqiang; Carlson, Joseph; Kariba, Robert; Muthemba, Samuel; Knop, Katarzyna; Barton, Geoffrey J.; Sherwood, Anna, V; Lopez-Montes, Antonio; Asiedu, Robert; Jamnadass, Ramni; Muchugi, Alice; Goodstein, David; Egesi, Chiedozie N.; Featherston, Jonathan; Asfaw, Asrat; Simpson, Gordon G.; Dolezel, Jaroslav; Hendre, Prasad S.; Van Deynze, Allen; Kumar, Pullikanti Lava; Obidiegwu, Jude E.; Bhattacharjee, Ranjana; Rokhsar, Daniel S.

The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species

GENOME BIOLOGY

IF9.4

2022-03-07

OAAI

Ma, Xiaokai; Yu, Li'ang; Fatima, Mahpara; Wadlington, William H.; Hulse-Kemp, Amanda M.; Zhang, Xingtan; Zhang, Shengcheng; Xu, Xindan; Wang, Jingjing; Huang, Huaxing; Lin, Jing; Deng, Ban; Liao, Zhenyang; Yang, Zhenhui; Ma, Yanhong; Tang, Haibao; Van Deynze, Allen; Ming, Ray

Genomic Resources to Guide Improvement of the Shea Tree

FRONTIERS IN PLANT SCIENCE

IF4.8

2021-09-09

OAAI

Hale, Iago; Ma, Xiao; Melo, Arthur T. O.; Padi, Francis Kwame; Hendre, Prasad S.; Kingan, Sarah B.; Sullivan, Shawn T.; Chen, Shiyu; Boffa, Jean-Marc; Muchugi, Alice; Danquah, Agyemang; Barnor, Michael Teye; Jamnadass, Ramni; Van de Peer, Yves; Van Deynze, Allen

A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

PLANT JOURNAL

IF5.7

2021-06-24

OAAI

Ma, Xiao; Vaistij, Fabian E.; Li, Yi; Jansen van Rensburg, Willem S.; Harvey, Sarah; Bairu, Michael W.; Venter, Sonja L.; Mavengahama, Sydney; Ning, Zemin; Graham, Ian A.; Van Deynze, Allen; Van de Peer, Yves; Denby, Katherine J.

An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids

PLANT GENOME

IF3.8

2021-06-10

PREAI

Hulse-Kemp, Amanda M.; Bostan, Hamed; Chen, Shiyu; Ashrafi, Hamid; Stoffel, Kevin; Sanseverino, Walter; Li, Linzhou; Cheng, Shifeng; Schatz, Michael C.; Garvin, Tyler; du Toit, Lindsey J.; Tseng, Elizabeth; Chin, Jason; Iorizzo, Massimo; Van Deynze, Allen

Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)

GIGASCIENCE

IF3.9

2021-03-12

OAAI

Wang, Xuewen; Chen, Shiyu; Ma, Xiao; Yssel, Anna E. J.; Chaluvadi, Srinivasa R.; Johnson, Matthew S.; Gangashetty, Prakash; Hamidou, Falalou; Sanogo, Moussa D.; Zwaenepoel, Arthur; Wallace, Jason; Van de Peer, Yves; Bennetzen, Jeffrey L.; Van Deynze, Allen

Sensory, physicochemical and volatile compound analysis of short and long shelf-life melon (Cucumis melo L.) genotypes at harvest and after postharvest storage

FOOD CHEMISTRY-X

IF8.2

2020-12-01

OAAI

Farcuh, Macarena; Copes, Bill; Le-Navenec, Gaelle; Marroquin, Juan; Cantu, Dario; Bradford, Kent J.; Guinard, Jean-Xavier; Van Deynze, Allen

Transcriptional analyses of differential cultivars during resistant and susceptible interactions with Peronospora effusa, the causal agent of spinach downy mildew

SCIENTIFIC REPORTS

IF3.9

2020-04-21

OAAI

Kandel, Shyam L.; Hulse-Kemp, Amanda M.; Stoffel, Kevin; Koike, Steven T.; Shi, Ainong; Mou, Beiquan; Van Deynze, Allen; Klosterman, Steven J.

Breeding Crops for Enhanced Food Safety

FRONTIERS IN PLANT SCIENCE

IF4.8

2020-04-15

OAAI

Melotto, Maeli; Brandl, Maria T.; Jacob, Cristian; Jay-Russell, Michele T.; Micallef, Shirley A.; Warburton, Marilyn L.; Van Deynze, Allen

Enhancing African orphan crops with genomics

NATURE GENETICS

IF31.8

2020-03-23

PREAI

Jamnadass, Ramni; Mumm, Rita H.; Hale, Iago; Hendre, Prasad; Muchugi, Alice; Dawson, Ian K.; Powell, Wayne; Graudal, Lars; Yana-Shapiro, Howard; Simons, Anthony J.; Van Deynze, Allen

研究方向