未登录 Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface Goff, Jennifer L.; Szink, Elizabeth G.; Durrence, Konnor L.; Lui, Lauren M.; Nielsen, Torben N.; Kuehl, Jennifer V.; Hunt, Kristopher A.; Chandonia, John-Marc; Huang, Jiawen; Thorgersen, Michael P.; Poole II, Farris L.; Stahl, David A.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.; Adams, Michael W. W. 分享 收藏
Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough Trotter, Valentine V.; Shatsky, Maxim; Price, Morgan N.; Juba, Thomas R.; Zane, Grant M.; De Leon, Kara B.; Majumder, Erica L. -W.; Gui, Qin; Ali, Rida; Wetmore, Kelly M.; Kuehl, Jennifer V.; Arkin, Adam P.; Wall, Judy D.; Deutschbauer, Adam M.; Chandonia, John-Marc; Butland, Gareth P. 分享 收藏
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance Kothari, Ankita; Roux, Simon; Zhang, Hanqiao; Prieto, Anatori; Soneja, Drishti; Chandonia, John-Marc; Spencer, Sarah; Wu, Xiaoqin; Altenburg, Sara; Fields, Matthew W.; Deutschbauer, Adam M.; Arkin, Adam P.; Alm, Eric J.; Chakraborty, Romy; Mukhopadhyay, Aindrila 分享 收藏
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities (vol 6, e01194-20, 2021) 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 (第6卷，e01194-20，2021) Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pa, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation 来自橡树岭保护区受污染沉积物的具有高钼酸盐亲和力ModA的耐金属芽孢杆菌菌株的表征 Ge, Xiaoxuan; Thorgersen, Michael P.; Poole, Farris L., II; Deutschbauer, Adam M.; Chandonia, John-Marc; Novichkov, Pavel S.; Gushgari-Doyle, Sara; Lui, Lauren M.; Nielsen, Torben; Chakraborty, Romy; Adams, Paul D.; Arkin, Adam P.; Hazen, Terry C.; Adams, Michael W. W. 分享 收藏
Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes 来自地下水质体的大型圆形质粒跨越多个不相容组，并富含多金属抗性基因 Kothari, Ankita; Wu, Yu-Wei; Chandonia, John-Marc; Charrier, Marimikel; Rajeev, Lara; Rocha, Andrea M.; Joyner, Dominique C.; Hazen, Terry C.; Singer, Steven W.; Mukhopadhyay, Aindrila 分享 收藏
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KBase: The United States Department of Energy Systems Biology Knowledgebase Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.; Harris, Nomi L.; Stevens, Rick L.; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W.; Henderson, Matthew L.; Riehl, William J.; Murphy-Olson, Dan; Chan, Stephen Y.; Kamimura, Roy T.; Kumari, Sunita; Drake, Meghan M.; Brettin, Thomas S.; Glass, Elizabeth M.; Chivian, Dylan; Gunter, Dan; Weston, David J.; Allen, Benjamin H.; Baumohl, Jason; Best, Aaron A.; Bowen, Ben; Brenner, Steven E.; Bun, Christopher C.; Chandonia, John-Marc; Chia, Jer-Ming; Colasanti, Ric; Conrad, Neal; Davis, James J.; Davison, Brian H.; DeJongh, Matthew; Devoid, Scott; Dietrich, Emily; Dubchak, Inna; Edirisinghe, Janaka N.; Fang, Gang; Faria, Jose P.; Frybarger, Paul M.; Gerlach, Wolfgang; Gerstein, Mark; Greiner, Annette; Gurtowski, James; Haun, Holly L.; He, Fei; Jain, Rashmi; Joachimiak, Marcin P.; Keegan, Kevin P.; Kondo, Shinnosuke; Kumar, Vivek; Land, Miriam L.; Meyer, Folker; Mills, Marissa; Novichkov, Pavel S.; Oh, Taeyun; Olsen, Gary J.; Olson, Robert; Parrello, Bruce; Pasternak, Shiran; Pearson, Erik; Poon, Sarah S.; Price, Gavin A.; Ramakrishnan, Srividya; Ranjan, Priya; Ronald, Pamela C.; Schatz, Michael C.; Seaver, Samuel M. D.; Shukla, Maulik; Sutormin, Roman A.; Syed, Mustafa H.; Thomason, James; Tintle, Nathan L.; Wang, Daifeng; Xia, Fangfang; Yoo, Hyunseung; Yoo, Shinjae; Yu, Dantong 分享 收藏
Lessons from the CAGI-4 Hopkins clinical panel challenge Chandonia, John-Marc; Adhikari, Aashish; Carraro, Marco; Chhibber, Aparna; Cutting, Garry R.; Fu, Yao; Gasparini, Alessandra; Jones, David T.; Kramer, Andreas; Kundu, Kunal; Lam, Hugo Y. K.; Leonardi, Emanuela; Moult, John; Pal, Lipika R.; Searls, David B.; Shah, Sohela; Sunyaev, Shamil; Tosatto, Silvio C. E.; Yin, Yizhou; Buckley, Bethany A. 分享 收藏
Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation King, Andrew J.; Preheim, Sarah P.; Bailey, Kathryn L.; Robeson, Michael S., II; Chowdhury, Taniya Roy; Crable, Bryan R.; Hurt, Richard A., Jr.; Mehlhorn, Tonia; Lowe, Kenneth A.; Phelps, Tommy J.; Palumbo, Anthony V.; Brandt, Craig C.; Brown, Steven D.; Podar, Mircea; Zhang, Ping; Lancaster, W. Andrew; Poole, Farris; Watson, David B.; Fields, Matthew W.; Chandonia, John-Marc; Alm, Eric J.; Zhou, Jizhong; Adams, Michael W. W.; Hazen, Terry C.; Arkin, Adam P.; Elias, Dwayne A. 分享 收藏
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions Shatsky, Maxim; Dong, Ming; Liu, Haichuan; Yang, Lee Lisheng; Choi, Megan; Singer, Mary E.; Geller, Jil T.; Fisher, Susan J.; Hall, Steven C.; Hazen, Terry C.; Brenner, Steven E.; Butland, Gareth; Jin, Jian; Witkowska, H. Ewa; Chandonia, John-Marc; Biggin, Mark D. 分享 收藏
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported Shatsky, Maxim; Allen, Simon; Gold, Barbara L.; Liu, Nancy L.; Juba, Thomas R.; Reveco, Sonia A.; Elias, Dwayne A.; Prathapam, Ramadevi; He, Jennifer; Yang, Wenhong; Szakal, Evelin D.; Liu, Haichuan; Singer, Mary E.; Geller, Jil T.; Lam, Bonita R.; Saini, Avneesh; Trotter, Valentine V.; Hall, Steven C.; Fisher, Susan J.; Brenner, Steven E.; Chhabra, Swapnil R.; Hazen, Terry C.; Wall, Judy D.; Witkowska, H. Ewa; Biggin, Mark D.; Chandonia, John-Marc; Butland, Gareth 分享 收藏
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High-throughput Isolation and Characterization of Untagged Membrane Protein Complexes: Outer Membrane Complexes of Desulfovibrio vulgaris 无标签膜蛋白复合物的高通量隔离和表征: 寻常脱硫弧菌的外膜复合物 Walian, Peter J.; Allen, Simon; Shatsky, Maxim; Zeng, Lucy; Szakal, Evelin D.; Liu, Haichuan; Hall, Steven C.; Fisher, Susan J.; Lam, Bonita R.; Singer, Mary E.; Geller, Jil T.; Brenner, Steven E.; Chandonia, John-Marc; Hazen, Terry C.; Witkowska, H. Ewa; Biggin, Mark D.; Jap, Bing K. 分享 收藏
Generalized Schemes for High-Throughput Manipulation of the Desulfovibrio vulgaris Genome Chhabra, S. R.; Butland, G.; Elias, D. A.; Chandonia, J. -M.; Fok, O. -Y.; Juba, T. R.; Gorur, A.; Allen, S.; Leung, C. M.; Keller, K. L.; Reveco, S.; Zane, G. M.; Semkiw, E.; Prathapam, R.; Gold, B.; Singer, M.; Ouellet, M.; Szakal, E. D.; Jorgens, D.; Price, M. N.; Witkowska, H. E.; Beller, H. R.; Arkin, A. P.; Hazen, T. C.; Biggin, M. D.; Auer, M.; Wall, J. D.; Keasling, J. D. 分享 收藏
Survey of large protein complexes in D. vulgaris reveals great structural diversity Han, Bong-Gyoon; Dong, Ming; Liu, Haichuan; Camp, Lauren; Geller, Jil; Singer, Mary; Hazen, Terry C.; Choi, Megan; Witkowska, H. Ewa; Ball, David A.; Typke, Dieter; Downing, Kenneth H.; Shatsky, Maxim; Brenner, Steven E.; Chandonia, John-Marc; Biggin, Mark D.; Glaeser, Robert M. 分享 收藏
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