Zamin Iqbal - Publications, H-index & Citations

Zamin Iqbal

European Bioinformatics Institute

50H指数

181论文数

3.4W被引数

收录论文 47

发表时间

Complete genomes reveal a refined map of Mycobacterium tuberculosis genetic diversity across evolutionary scales 完整基因组揭示了结核分枝杆菌遗传多样性在进化尺度上的精细图谱

Nature Communications

IF15.7

2026-06-06

OAAI

Ana María García-Marín; Manuela Torres-Puente; Llúcia Martinez-Priego; Griselda De Marco; Miguel Moreno-Molina; Martin Hunt; Zamin Iqbal; Ana Gil-Brusola; Mariana G. López; Fernando González-Candelas; Javier Alonso-del-Real; Iñaki Comas

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny 解决SARS-CoV-2系统发育中大流行范围的系统错误

Nature Methods

IF32.1

2026-02-09

OAAI

Martin Hunt; Angie S. Hinrichs; Daniel Anderson; Lily Karim; Bethany L. Dearlove; Jeff Knaggs; Bede Constantinides; Philip W. Fowler; Gillian Rodger; Teresa Street; Sheila Lumley; Hermione Webster; Theo Sanderson; Christopher Ruis; Benjamin Kotzen; Nicola de Maio; Lucas N. Amenga-Etego; Dominic S. Y. Amuzu; Martin Avaro; Gordon A. Awandare; Reuben Ayivor-Djanie; Timothy Barkham; Matthew Bashton; Elizabeth M. Batty; Yaw Bediako; Denise De Belder; Estefania Benedetti; Andreas Bergthaler; Stefan A. Boers; Josefina Campos; Rosina Afua Ampomah Carr; Yuan Yi Constance Chen; Facundo Cuba; Maria Elena Dattero; Wanwisa Dejnirattisai; Alexander Dilthey; Kwabena Obeng Duedu; Lukas Endler; Ilka Engelmann; Ngiambudulu M. Francisco; Jonas Fuchs; Etienne Z. Gnimpieba; Soraya Groc; Jones Gyamfi; Dennis Heemskerk; Torsten Houwaart; Nei-yuan Hsiao; Matthew Huska; Martin Hölzer; Arash Iranzadeh; Hanna Jarva; Chandima Jeewandara; Bani Jolly; Rageema Joseph; Ravi Kant; Karrie Ko Kwan Ki; Satu Kurkela; Maija Lappalainen; Marie Lataretu; Jacob Lemieux; Chang Liu; Gathsaurie Neelika Malavige; Tapfumanei Mashe; Juthathip Mongkolsapaya; Brigitte Montes; Jose Arturo Molina Mora; Collins M. Morang’a; Bernard Mvula; Niranjan Nagarajan; Andrew Nelson; Joyce M. Ngoi; Joana Paula da Paixão; Marcus Panning; Tomas Poklepovich; Peter K. Quashie; Diyanath Ranasinghe; Mara Russo; James Emmanuel San; Nicholas D. Sanderson; Vinod Scaria; Gavin Screaton; October Michael Sessions; Tarja Sironen; Abay Sisay; Darren Smith; Teemu Smura; Piyada Supasa; Chayaporn Suphavilai; Jeremy Swann; Houriiyah Tegally; Bryan Tegomoh; Olli Vapalahti; Andreas Walker; Robert J. Wilkinson; Carolyn Williamson; Xavier Zair; Tulio de Oliveira; Timothy EA Peto; Derrick Crook; Russell Corbett-Detig; Zamin Iqbal

Rate variation and recurrent sequence errors in pandemic-scale phylogenetics 大流行规模系统发育中的速率变化和反复出现的序列错误

Nature Methods

IF32.1

2026-02-09

OAAI

Nicola De Maio; Myrthe Willemsen; Samuel Martin; Zihao Guo; Abhratanu Saha; Martin Hunt; Nhan Ly-Trong; Bui Quang Minh; Zamin Iqbal; Nick Goldman

Pre- and postantibiotic epoch: The historical spread of antimicrobial resistance Cazares, A.; Figueroa, W.; Cazares, D.; Lima, L.; Turnbull, J.D.; McGregor, H.; Dicks, J.; Alexander, S.; Iqbal, Z.; Thomson, N.R. 抗生素使用前与使用后时期：抗菌药物耐药性的历史传播。Science 2025, eadr1522. [Google Scholar] [CrossRef]

SCIENCE

IF45.8

2025-12-04

PREAI

Cazares, Adrian; Figueroa, Wendy; Cazares, Daniel; Lima, Leandro; Turnbull, Jake D.; McGregor, Hannah; Dicks, Jo; Alexander, Sarah; Iqbal, Zamin; Thomson, Nicholas R.

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi Typhi Mykrobe：针对伤寒杆菌 Salmonella Typhi 的快速且准确的谱系鉴定以及直接从序列读数进行的抗菌药物耐药性基因分型

Genome Medicine

IF11.2

2025-10-24

OAAI

Danielle J. Ingle; Jane Hawkey; Martin Hunt; Zamin Iqbal; Jacqueline A. Keane; Ayorinde O. Afolayan; Niyaz Ahmed; Saadia Andleeb; Philip M. Ashton; Isaac I. Bogoch; Megan E. Carey; Marie Anne Chattaway; John A. Crump; Paula Diaz Guevara; Benjamin P. Howden; Hidemasa Izumiya; Jobin John Jacob; Louise M. Judd; Arti Kapil; Karen H. Keddy; Justin Y. Kim; Myron M. Levine; Masatomo Morita; Satheesh Nair; Sophie Octavia; Iruka N. Okeke; Precious E. Osadebamwen; Sadia Isfat Ara Rahman; Assaf Rokney; David A. Rasko; Varun Shamanna; Michael J. Sikorski; Anthony M. Smith; Gabriel T. Sunmonu; Kaitlin A. Tagg; Ryan R. Wick; Zoe A. Dyson; Kathryn E. Holt

Tracking clonal and plasmid transmission in colistin- and carbapenem-resistant Klebsiella pneumoniae 追踪耐多粘菌素和碳青霉烯肺炎克雷伯菌的克隆和质粒传播

MSYSTEMS

IF4.6

2025-02-18

OAAI

Akintayo, Ifeoluwa; Siroglavic, Marko; Frolova, Daria; Silva, Mabel Budia; Grundmann, Hajo; Iqbal, Zamin; Budimir, Ana; Reuter, Sandra

Genomic perspective on the bacillus causing paratyphoid B fever

NATURE COMMUNICATIONS

IF15.7

2024-12-10

OAAI

Hawkey, Jane; Frezal, Lise; Tran Dien, Alicia; Zhukova, Anna; Brown, Derek; Chattaway, Marie Anne; Simon, Sandra; Izumiya, Hidemasa; Fields, Patricia I.; De Lappe, Niall; Kaftyreva, Lidia; Xu, Xuebin; Isobe, Junko; Clermont, Dominique; Njamkepo, Elisabeth; Akeda, Yukihiro; Issenhuth-Jeanjean, Sylvie; Makarova, Mariia; Wang, Yanan; Hunt, Martin; Jenkins, Brent M.; Ravel, Magali; Guibert, Veronique; Serre, Estelle; Matveeva, Zoya; Fabre, Laetitia; Cormican, Martin; Yue, Min; Zhu, Baoli; Morita, Masatomo; Iqbal, Zamin; Silva Nodari, Carolina; Pardos de la Gandara, Maria; Weill, Francois-Xavier

Applying rearrangement distances to enable plasmid epidemiology with pling

MICROBIAL GENOMICS

IF4

2024-10-14

OAAI

Frolova, Daria; Lima, Leandro; Roberts, Leah Wendy; Bohnenkaemper, Leonard; Wittler, Roland; Stoye, Jens; Iqbal, Zamin

Mobilisation and analyses of publicly available SARS- CoV-2 data for pandemic responses 动员和分析公开的传染性非典型肺炎CoV-2大流行应对数据

MICROBIAL GENOMICS

IF4

2024-02-15

OAAI

Rahman, Nadim; O'Cathail, Colman; Zyoud, Ahmad; Sokolov, Alexey; Munnink, Bas Oude; Gruening, Bjoern; Cummins, Carla; Amid, Clara; Nieuwenhuijse, David F.; Visontai, David; Yuan, David Yu; Gupta, Dipayan; Prasad, Divyae K.; Gulyas, Gabor Mate; Rinck, Gabriele; McKinnon, Jasmine; Rajan, Jeena; Knaggs, Jeff; Skiby, Jeffrey Edward; Steger, Jozsef; Szarvas, Judit; Gueye, Khadim; Papp, Krisztian; Hoek, Maarten; Kumar, Manish; Ventouratou, Marianna A.; Bouquieaux, Marie -Catherine; Koliba, Martin; Mansurova, Milena; Haseeb, Muhammad; Worp, Nathalie; Harrison, Peter W.; Leinonen, Rasko; Thorne, Ross; Selvakumar, Sandeep; Hunt, Sarah; Venkataraman, Sundar; Jayathilaka, Suran; Cezard, Timothee; Maier, Wolfgang; Waheed, Zahra; Iqbal, Zamin; Aarestrup, Frank Miller; Csabai, Istvan; Koopmans, Marion; Burdett, Tony; Cochrane, Guy

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach 结核分枝杆菌抗生素耐药性的定量测量揭示了靶基因方法中耐药性和敏感性的遗传决定因素

NATURE COMMUNICATIONS

IF15.7

2024-01-12

OAAI

Barilar, Ivan; Battaglia, Simone; Borroni, Emanuele; Brandao, Angela Pires; Brankin, Alice; Cabibbe, Andrea Maurizio; Carter, Joshua; Chetty, Darren; Cirillo, Daniela Maria; Claxton, Pauline; Clifton, David A.; Cohen, Ted; Coronel, Jorge; Crook, Derrick W.; Dreyer, Viola; Earle, Sarah G.; Escuyer, Vincent; Ferrazoli, Lucilaine; Fowler, Philip W.; Gao, George Fu; Gardy, Jennifer; Gharbia, Saheer; Ghisi, Kelen Teixeira; Ghodousi, Arash; Gibertoni Cruz, Ana Luiza; Grandjean, Louis; Grazian, Clara; Groenheit, Ramona; Guthrie, Jennifer L.; He, Wencong; Hoffmann, Harald; Hoosdally, Sarah J.; Hunt, Martin; Iqbal, Zamin; Ismail, Nazir Ahmed; Jarrett, Lisa; Joseph, Lavania; Jou, Ruwen; Kambli, Priti; Khot, Rukhsar; Knaggs, Jeff; Koch, Anastasia; Kohlerschmidt, Donna; Kouchaki, Samaneh; Lachapelle, Alexander S.; Lalvani, Ajit; Lapierre, Simon Grandjean; Laurenson, Ian F.; Letcher, Brice; Lin, Wan-Hsuan; Liu, Chunfa; Liu, Dongxin; Malone, Kerri M.; Mandal, Ayan; Mansjoe, Mikael; Calisto Matias, Daniela Vicente Lucena; Meintjes, Graeme; de Freitas Mendes, Flavia; Merker, Matthias; Mihalic, Marina; Millard, James; Miotto, Paolo; Mistry, Nerges; Moore, David; Musser, Kimberlee A.; Ngcamu, Dumisani; Nhung, Hoang Ngoc; Niemann, Stefan; Nilgiriwala, Kayzad Soli; Nimmo, Camus; O'Donnell, Max; Okozi, Nana; Oliveira, Rosangela Siqueira; Omar, Shaheed Vally; Paton, Nicholas; Peto, Timothy E. A.; Pinhata, Juliana Maira Watanabe; Plesnik, Sara; Puyen, Zully M.; Rabodoarivelo, Marie Sylvianne; Rakotosamimanana, Niaina; Rancoita, Paola M. V.; Rathod, Priti; Robinson, Esther Rhiannon; Rodger, Gillian; Rodrigues, Camilla; Rodwell, Timothy C.; Roohi, Aysha; Santos-Lazaro, David; Shah, Sanchi; Smith, Grace; Kohl, Thomas Andreas; Solano, Walter; Spitaleri, Andrea; Steyn, Adrie J. C.; Supply, Philip; Surve, Utkarsha; Tahseen, Sabira; Thuong, Nguyen Thuy Thuong; Thwaites, Guy; Todt, Katharina; Trovato, Alberto; Utpatel, Christian; Van Rie, Annelies; Vijay, Srinivasan; Walker, A. Sarah; Walker, Timothy M.; Warren, Robin; Werngren, Jim; Wijkander, Maria; Wilkinson, Robert J.; Wilson, Daniel J.; Wintringer, Penelope; Xiao, Yu-Xin; Yang, Yang; Yanlin, Zhao; Yao, Shen-Yuan; Zhu, Baoli

Drug resistance prediction for Mycobacterium tuberculosis with reference graphs 用参考图预测结核分枝杆菌的耐药性

MICROBIAL GENOMICS

IF4

2023-08-08

OAAI

Hall, Michael B.; Lima, Leandro; Coin, Lachlan J. M.; Iqbal, Zamin

Long- read sequencing reveals genomic diversity and associated plasmid movement of carbapenemase- producing bacteria in a UK hospital over 6 years

MICROBIAL GENOMICS

IF4

2023-07-05

OAAI

Roberts, Leah W.; Enoch, David A.; Khokhar, Fahad; Blackwell, Grace A.; Wilson, Hayley; Warne, Ben; Gouliouris, Theodore; Iqbal, Zamin; Toeroek, M. Estee

Deciphering the Tangible Spatio-Temporal Spread of a 25-Year Tuberculosis Outbreak Boosted by Social Determinants

MICROBIOLOGY SPECTRUM

IF3.8

2023-04-13

OAAI

Lopez, Mariana G.; Campos-Herrero, Ma Isolina; Torres-Puente, Manuela; Canas, Fernando; Comin, Jessica; Copado, Rodolfo; Wintringer, Penelope; Iqbal, Zamin; Lagarejos, Eduardo; Moreno-Molina, Miguel; Perez-Lago, Laura; Pino, Berta; Sante, Laura; Garcia de Viedma, Dario; Samper, Sofia; Comas, Inaki

Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Prediction

JOURNAL OF CLINICAL MICROBIOLOGY

IF5.4

2023-03-23

OAAI

Nilgiriwala, Kayzad; Rabodoarivelo, Marie-Sylvianne; Hall, Michael B.; Patel, Grishma; Mandal, Ayan; Mishra, Shefali; Andrianomanana, Fanantenana Randria; Dingle, Kate; Rodger, Gillian; George, Sophie; Crook, Derrick W.; Hoosdally, Sarah; Mistry, Nerges; Rakotosamimanana, Niaina; Iqbal, Zamin; Grandjean Lapierre, Simon; Walker, Timothy M.

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

GENOME BIOLOGY

IF9.4

2022-07-05

OAAI

Hunt, Martin; Letcher, Brice; Malone, Kerri M.; Nguyen, Giang; Hall, Michael B.; Colquhoun, Rachel M.; Lima, Leandro; Schatz, Michael C.; Ramakrishnan, Srividya; Iqbal, Zamin

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

GENOME BIOLOGY

IF9.4

2021-09-14

OAAI

Colquhoun, Rachel M.; Hall, Michael B.; Lima, Leandro; Roberts, Leah W.; Malone, Kerri M.; Hunt, Martin; Letcher, Brice; Hawkey, Jane; George, Sophie; Pankhurst, Louise; Iqbal, Zamin

Gramtools enables multiscale variation analysis with genome graphs Gramtools使用基因组图实现多尺度变异分析

GENOME BIOLOGY

IF9.4

2021-09-06

OAAI

Letcher, Brice; Hunt, Martin; Iqbal, Zamin

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning

GENOME MEDICINE

IF11.2

2021-08-30

OAAI

Groschel, Matthias, I; Owens, Martin; Freschi, Luca; Vargas, Roger Jr Jr; Marin, Maximilian G.; Phelan, Jody; Iqbal, Zamin; Dixit, Avika; Farhat, Maha R.

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

NATURE COMMUNICATIONS

IF15.7

2021-05-11

OAAI

Hawkey, Jane; Paranagama, Kalani; Baker, Kate S.; Bengtsson, Rebecca J.; Weill, Francois-Xavier; Thomson, Nicholas R.; Baker, Stephen; Cerdeira, Louise; Iqbal, Zamin; Hunt, Martin; Ingle, Danielle J.; Dallman, Timothy J.; Jenkins, Claire; Williamson, Deborah A.; Holt, Kathryn E.

Drug-Resistant Tuberculosis in Pet Ring-Tailed Lemur, Madagascar

EMERGING INFECTIOUS DISEASES

IF6.6

2021-03-01

OAAI

LaFleur, Marni; Reuter, Kim E.; Hall, Michael B.; Rasoanaivo, Hoby H.; McKernan, Stuart; Ranaivomanana, Paulo; Michel, Anita; Rabodoarivelo, Marie Sylvianne; Iqbal, Zamin; Rakotosamimanana, Niaina; Lapierre, Simon Grandjean

研究方向