Matthew Bashton - Publications, H-index & Citations

Matthew Bashton

Northumbria University

29H指数

118论文数

6.9K被引数

收录论文 28

发表时间

Identification and masking of artifactual and misleading within-host variants in deep-sequencing SARS-CoV-2 data 在深度测序SARS-CoV-2数据中识别和掩盖人为的和误导性的宿主内变体

Molecular Biology and Evolution

IF5.3

2026-08-18

OAAI

Klara Marie Anker; Rosario Evans Pena; Steven A Kemp; Joseph Clarke; Lele Zhao; David Bonsall; Nicholas Grayson; Matthew Bashton; Ann Sarah Walker; Tanya Golubchik; Matthew Hall; Katrina Lythgoe; null; null

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny 解决SARS-CoV-2系统发育中大流行范围的系统错误

Nature Methods

IF32.1

2026-02-09

OAAI

Martin Hunt; Angie S. Hinrichs; Daniel Anderson; Lily Karim; Bethany L. Dearlove; Jeff Knaggs; Bede Constantinides; Philip W. Fowler; Gillian Rodger; Teresa Street; Sheila Lumley; Hermione Webster; Theo Sanderson; Christopher Ruis; Benjamin Kotzen; Nicola de Maio; Lucas N. Amenga-Etego; Dominic S. Y. Amuzu; Martin Avaro; Gordon A. Awandare; Reuben Ayivor-Djanie; Timothy Barkham; Matthew Bashton; Elizabeth M. Batty; Yaw Bediako; Denise De Belder; Estefania Benedetti; Andreas Bergthaler; Stefan A. Boers; Josefina Campos; Rosina Afua Ampomah Carr; Yuan Yi Constance Chen; Facundo Cuba; Maria Elena Dattero; Wanwisa Dejnirattisai; Alexander Dilthey; Kwabena Obeng Duedu; Lukas Endler; Ilka Engelmann; Ngiambudulu M. Francisco; Jonas Fuchs; Etienne Z. Gnimpieba; Soraya Groc; Jones Gyamfi; Dennis Heemskerk; Torsten Houwaart; Nei-yuan Hsiao; Matthew Huska; Martin Hölzer; Arash Iranzadeh; Hanna Jarva; Chandima Jeewandara; Bani Jolly; Rageema Joseph; Ravi Kant; Karrie Ko Kwan Ki; Satu Kurkela; Maija Lappalainen; Marie Lataretu; Jacob Lemieux; Chang Liu; Gathsaurie Neelika Malavige; Tapfumanei Mashe; Juthathip Mongkolsapaya; Brigitte Montes; Jose Arturo Molina Mora; Collins M. Morang’a; Bernard Mvula; Niranjan Nagarajan; Andrew Nelson; Joyce M. Ngoi; Joana Paula da Paixão; Marcus Panning; Tomas Poklepovich; Peter K. Quashie; Diyanath Ranasinghe; Mara Russo; James Emmanuel San; Nicholas D. Sanderson; Vinod Scaria; Gavin Screaton; October Michael Sessions; Tarja Sironen; Abay Sisay; Darren Smith; Teemu Smura; Piyada Supasa; Chayaporn Suphavilai; Jeremy Swann; Houriiyah Tegally; Bryan Tegomoh; Olli Vapalahti; Andreas Walker; Robert J. Wilkinson; Carolyn Williamson; Xavier Zair; Tulio de Oliveira; Timothy EA Peto; Derrick Crook; Russell Corbett-Detig; Zamin Iqbal

Comprehensive analysis of SARS-CoV-2 Spike evolution: epitope classification and immune escape prediction SARS-CoV-2刺突蛋白演化的综合分析：表位分类和免疫逃逸预测

VIRUS EVOLUTION

IF4

2025-01-01

OAAI

Teruel, Natalia Fagundes Borges; Crown, Matthew; Rajsbaum, Ricardo; Bashton, Matthew; Najmanovich, Rafael

TRIM7 ubiquitinates SARS-CoV-2 membrane protein to limit apoptosis and viral replication

NATURE COMMUNICATIONS

IF15.7

2024-11-30

OAAI

Gonzalez-Orozco, Maria; Tseng, Hsiang-chi; Hage, Adam; Xia, Hongjie; Behera, Padmanava; Afreen, Kazi; Penaflor-Tellez, Yoatzin; Giraldo, Maria I.; Huante, Matthew; Puebla-Clark, Lucinda; van Tol, Sarah; Odle, Abby; Crown, Matthew; Teruel, Natalia; Shelite, Thomas R.; Moreno-Contreras, Joaquin; Terasaki, Kaori; Makino, Shinji; Menachery, Vineet; Endsley, Mark; Endsley, Janice J.; Najmanovich, Rafael J.; Bashton, Matthew; Stephens, Robin; Shi, Pei-Yong; Xie, Xuping; Freiberg, Alexander N.; Rajsbaum, Ricardo

Environmental microbiome in the home and daycare settings during the COVID-19 pandemic, and potential risk of non-communicable disease in children

ENVIRONMENTAL MICROBIOLOGY REPORTS

IF2.7

2024-01-12

OAAI

McKay, Jill A.; Crown, Matthew; Bashton, Matthew; Pearce, David; Entwistle, Jane A.; Sangal, Vartul

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey 英国冠状病毒 (新型冠状病毒肺炎) 感染调查3年捕获的谱系替换和进化

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

IF3.5

2023-10-18

OAAI

Lythgoe, Katrina A.; Golubchik, Tanya; Hall, Matthew; House, Thomas; Cahuantzi, Roberto; MacIntyre-Cockett, George; Fryer, Helen; Thomson, Laura; Nurtay, Anel; Ghafani, Mahan; Buck, David; Green, Angie; Trebes, Amy; Piazza, Paolo; Lonie, Lorne J.; Studley, Ruth; Rourke, Emma; Smith, Darren; Bashton, Matthew; Nelson, Andrew; Crown, Matthew; McCann, Clare; Young, Gregory R.; dos Santos, Rui Andre Nunes; Richards, Zack; Tariq, Adnan; Fraser, Christophe; Diamond, Ian; Barrett, Jeff; Walker, Ann Sarah; Bonsall, David

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias (vol 19, e1011461, 2023)病毒负荷与年龄，疫苗接种和病毒变异相关的人群代表性SARS-CoV-2研究，解释了时间，因为感染相关的抽样偏倚 (vol 19，e1011461，2023)

PLOS PATHOGENS

IF4.9

2023-10-06

OAAI

Fryer, Helen R.; Golubchik, Tanya; Hall, Matthew; Fraser, Christophe; Hinch, Robert; Ferretti, Luca; Thomson, Laura; Nurtay, Anel; Pellis, Lorenzo; House, Thomas; MacIntyre-Cockett, George; Trebes, Amy; Buck, David; Piazza, Paolo; Green, Angie; Lonie, Lorne J.; Smith, Darren; Bashton, Matthew; Crown, Matthew; Nelson, Andrew; Mccann, Clare M.; Tariq, Mohammed Adnan; Elstob, Claire J.; Dos Santos, Rui Nunes; Richards, Zack; Xhang, Xin; Hawley, Joseph; Lee, Mark R.; Carrillo-Barragan, Priscilla; Chapman, Isobel; Harthern-Flint, Sarah; Bonsall, David; Lythgoe, Katrina A.

Single-cell multi-omics identifies chronic inflammation as a driver of TP53-mutant leukemic evolution 单细胞多组学将慢性炎症确定为TP53-mutant白血病演变的驱动因素

NATURE GENETICS

IF31.8

2023-09-04

OAAI

Rodriguez-Meira, Alba; Norfo, Ruggiero; Wen, Sean; Chedeville, Agathe L.; Rahman, Haseeb; O'Sullivan, Jennifer; Wang, Guanlin; Louka, Eleni; Kretzschmar, Warren W.; Paterson, Aimee; Brierley, Charlotte; Martin, Jean-Edouard; Demeule, Caroline; Bashton, Matthew; Sousos, Nikolaos; Moralli, Daniela; Meem, Lamia Subha; Carrelha, Joana; Wu, Bishan; Hamblin, Angela; Guermouche, Helene; Pasquier, Florence; Marzac, Christophe; Girodon, Francois; Vainchenker, William; Drummond, Mark; Harrison, Claire; Chapman, J. Ross; Plo, Isabelle; Jacobsen, Sten Eirik W.; Psaila, Bethan; Thongjuea, Supat; Antony-Debre, Ileana; Mead, Adam J.

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias 病毒负荷与年龄，疫苗接种和病毒变异相关的人群代表性SARS-CoV-2研究，解释了时间，因为感染相关的抽样偏倚

PLOS PATHOGENS

IF4.9

2023-08-14

OAAI

Fryer, Helen R.; Golubchik, Tanya; Hall, Matthew; Fraser, Christophe; Hinch, Robert; Ferretti, Luca; Thomson, Laura; Nurtay, Anel; Pellis, Lorenzo; House, Thomas; MacIntyre-Cockett, George; Trebes, Amy; Buck, David; Piazza, Paolo; Green, Angie; Lonie, Lorne J.; Smith, Darren; Bashton, Matthew; Crown, Matthew; Nelson, Andrew; McCann, Clare M.; Tariq, Mohammed Adnan; Elstob, Claire J.; Dos Santos, Rui Nunes; Richards, Zack; Xhang, Xin; Hawley, Joseph; Lee, Mark R.; Carrillo-Barragan, Priscilla; Chapman, Isobel; Harthern-Flint, Sarah; Bonsall, David; Lythgoe, Katrina A.

Integrative genomic analysis of childhood acute lymphoblastic leukaemia lacking a genetic biomarker in the UKALL2003 clinical trial 在UKALL2003临床试验中缺乏遗传生物标志物的儿童急性淋巴细胞白血病的综合基因组分析

LEUKEMIA

IF13.4

2022-12-22

OAAI

Schwab, Claire; Cranston, Ruth E. E.; Ryan, Sarra L. L.; Butler, Ellie; Winterman, Emily; Hawking, Zoe; Bashton, Matthew; Enshaei, Amir; Russell, Lisa J. J.; Kingsbury, Zoya; Peden, John F. F.; Barretta, Emilio; Murray, James; Gibson, Jude; Hinchliffe, Andrew C. C.; Bain, Robert; Vora, Ajay; Bentley, David R. R.; Ross, Mark T. T.; Moorman, Anthony V. V.; Harrison, Christine J. J.

Loss of ALK hotspot mutations in relapsed neuroblastoma 复发性神经母细胞瘤中ALK热点突变的缺失

GENES CHROMOSOMES & CANCER

IF2.8

2022-09-13

OAAI

Allinson, Lisa M.; Potts, Aaron; Goodman, Angharad; Bown, Nick; Bashton, Matthew; Thompson, Dean; Basta, Nermine O.; Gabriel, Alem S.; McCorkindale, Michael; Ng, Antony; McNally, Richard J. Q.; Tweddle, Deborah A.

Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study 快速SARS-CoV-2基因组测序在医院发病的新型冠状病毒肺炎感染控制中的有效性: 多中心，前瞻性研究

ELIFE

IF0

2022-09-13

OAAI

Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; Shin, Gee Yen; Mahungu, Tabitha; Saeed, Kordo; Saluja, Tranprit; Taha, Yusri; Mahida, Nikunj; Pope, Cassie; Chawla, Anu; Cutino-Moguel, Maria-Teresa; Tamuri, Asif; Williams, Rachel; Darby, Alistair; Robertson, David L.; Flaviani, Flavia; Nastouli, Eleni; Robson, Samuel; Smith, Darren; Loose, Matthew; Laing, Kenneth; Monahan, Irene; Kele, Beatrix; Haldenby, Sam; George, Ryan; Bashton, Matthew; Witney, Adam A.; Byott, Matthew; Coll, Francesc; Chapman, Michael; Peacock, Sharon J.; Hughes, Joseph; Nebbia, Gaia; Partridge, David G.; Parker, Matthew; Price, James Richard; Peters, Christine; Roy, Sunando; Snell, Luke B.; de Silva, Thushan, I; Thomson, Emma; Flowers, Paul; Copas, Andrew; Breuer, Judith

Molecular characterization and clinical outcome of B-cell precursor acute lymphoblastic leukemia with IG-MYC rearrangement

HAEMATOLOGICA

IF7.9

2022-04-28

OAAI

Bomken, Simon; Enshaei, Amir; Schwalbe, Edward C.; Mikulasova, Aneta; Dai, Yunfeng; Zaka, Masood; Fung, Kent T. M.; Bashton, Matthew; Lim, Huezin; Jones, Lisa; Karataraki, Nefeli; Winterman, Emily; Ashby, Cody; Attarbaschi, Andishe; Bertrand, Yves; Bradtke, Jutta; Buldini, Barbara; Burke, G. A. Amos; Cazzaniga, Giovanni; Goehring, Gudrun; de Groot-Kruseman, Hesta A.; Haferlach, Claudia; Lo Nigro, Luca; Parihar, Mayur; Plesa, Adriana; Seaford, Emma; Sonneveld, Edwin; Strehl, Sabine; van der Velden, Vincent H. J.; Rand, Vikki; Hunger, Stephen P.; Harrison, Christine J.; Bacon, Chris M.; van Delft, Frederik W.; Loh, Mignon L.; Moppett, John; Vormoor, Josef; Walker, Brian A.; Moorman, Anthony V.; Russell, Lisa J.

Bacterial Diversity in House Dust: Characterization of a Core Indoor Microbiome

FRONTIERS IN ENVIRONMENTAL SCIENCE

IF3.7

2021-11-23

OAAI

Thompson, Jonathan R.; Argyraki, Ariadne; Bashton, Matthew; Bramwell, Lindsay; Crown, Matthew; Hursthouse, Andrew S.; Jabeen, Khadija; Marinho Reis, Paula; Namdeo, Anil; Nelson, Andrew; Pearce, David A.; Potgieter-Vermaak, Sanja; Rasmussen, Pat E.; Wragg, Joanna; Entwistle, Jane A.

Emergence and maintenance of actionable genetic drivers at medulloblastoma relapse 髓母细胞瘤复发时可行的遗传驱动因素的出现和维持

NEURO-ONCOLOGY

IF13.4

2021-07-17

OAAI

Richardson, Stacey; Hill, Rebecca M.; Kui, Christopher; Lindsey, Janet C.; Grabovksa, Yura; Keeling, Claire; Pease, Louise; Bashton, Matthew; Crosier, Stephen; Vinci, Maria; Andre, Nicolas; Figarella-Branger, Dominique; Hansford, Jordan R.; Lastowska, Maria; Zakrzewski, Krzysztof; Jorgensen, Mette; Pickles, Jessica C.; Taylor, Michael D.; Pfister, Stefan M.; Wharton, Stephen B.; Pizer, Barry; Michalski, Antony; Joshi, Abhijit; Jacques, Thomas S.; Hicks, Debbie; Schwalbe, Edward C.; Williamson, Daniel; Ramaswamy, Vijay; Bailey, Simon; Clifford, Steven C.

Concordance of copy number abnormality detection using SNP arrays and Multiplex Ligation-dependent Probe Amplification (MLPA) in acute lymphoblastic leukaemia

SCIENTIFIC REPORTS

IF3.9

2020-01-08

OAAI

Bashton, Matthew; Hollis, Robin; Ryan, Sarra; Schwab, Claire J.; Moppett, John; Harrison, Christine J.; Moorman, Anthony V.; Enshaei, Amir

SH2B3 inactivation through CN-LOH 12q is uniquely associated with B-cell precursor ALL with iAMP21 or other chromosome 21 gain

LEUKEMIA

IF13.4

2019-02-28

OAAI

Sinclair, Paul B.; Ryan, Sarra; Bashton, Matthew; Hollern, Shaun; Hanna, Rebecca; Case, Marian; Schwalbe, Edward C.; Schwab, Claire J.; Cranston, Ruth E.; Young, Brian D.; Irving, Julie A. E.; Vora, Ajay J.; Moorman, Anthony, V; Harrison, Christine J.

High prevalence of focal and multi-focal somatic genetic variants in the human brain 人脑中局灶性和多局灶性体细胞遗传变异的高患病率

NATURE COMMUNICATIONS

IF15.7

2018-10-15

OAAI

Keogh, Michael J.; Wei, Wei; Aryaman, Juvid; Walker, Lauren; van den Ameele, Jelle; Coxhead, Jon; Wilson, Ian; Bashton, Matthew; Beck, Jon; West, John; Chen, Richard; Haudenschild, Christian; Bartha, Gabor; Luo, Shujun; Morris, Chris M.; Jones, Nick S.; Attems, Johannes; Chinnery, Patrick F.

Dynamic clonal progression in xenografts of acute lymphoblastic leukemia with intrachromosomal amplification of chromosome 21

HAEMATOLOGICA

IF7.9

2018-02-15

OAAI

Sinclair, Paul. B.; Blair, Helen H.; Ryan, Sarra L.; Buechler, Lars; Cheng, Joanna; Clayton, Jake; Hanna, Rebecca; Hollern, Shaun; Hawking, Zoe; Bashton, Matthew; Schwab, Claire J.; Jones, Lisa; Russell, Lisa J.; Marr, Helen; Carey, Peter; Halsey, Christina; Heidenreich, Olaf; Moorman, Anthony V.; Harrison, Christine J.

Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures

SCIENTIFIC REPORTS

IF3.9

2017-10-18

OAAI

Schwalbe, E. C.; Hicks, D.; Rafiee, G.; Bashton, M.; Gohlke, H.; Enshaei, A.; Potluri, S.; Matthiesen, J.; Mather, M.; Taleongpong, P.; Chaston, R.; Silmon, A.; Curtis, A.; Lindsey, J. C.; Crosier, S.; Smith, A. J.; Goschzik, T.; Doz, F.; Rutkowski, S.; Lannering, B.; Pietsch, T.; Bailey, S.; Williamson, D.; Clifford, S. C.

研究方向