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Dmitriy Sonkin

division of cancer treatment and diagnosis

22H指数
156论文数
1.5W被引数
收录论文 43
发表时间
Interpreting the functional impact of genetic variants: The need for context qualifiers解读基因变异的功能影响:需要背景限定因素
err2025-12-01
err0
PREAI
errSimone Martinelli; Hélène Cavé; Alessandro De Luca; Marina DiStefano; Rachel Karchin; Ana Clara Lugones; Anne O’Donnell-Luria; Deborah I. Ritter; David Tamborero; Michael Y. Tolstorukov; Paulo Vidal Campregher; Marco Tartaglia; Dmitriy Sonkin
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Improving transparency of computational tools for variant effect prediction
err2024-07-02
err1
PREAI
errKarchin, Rachel; Radivojac, Predrag; O'Donnell-Luria, Anne; Greenblatt, Marc S.; Tolstorukov, Michael Y.; Sonkin, Dmitriy
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Targeted Investigational Oncology Agents in the NCI-60: A Phenotypic Systems-based Resource
err2023-08-07
err5
errOAAI
errMorris, Joel; Kunkel, Mark W.; White, Stephen L.; Wishka, Donn G.; Lopez, Omar D.; Bowles, Lori; Brady, Penny Sellers; Ramsey, Patricia; Grams, Julie; Rohrer, Tiffany; Martin, Karen; Dexheimer, Thomas S.; Coussens, Nathan P.; Evans, David; Risbood, Prabhakar; Sonkin, Dmitriy; Williams, John D.; Polley, Eric C.; Collins, Jerry M.; Doroshow, James H.; Teicher, Beverly A.
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Targeted investigational oncology agents (IOA) in the NCI60: a phenotypic systems-based resource
err2023-04-04
err0
PREAI
errMorris, Joel; Kunkel, Mark W.; White, Stephen L.; Wishka, Donn G.; Lopez, Omar D.; Bowles, Lori; Sellers, Penny; Ramsey, Patricia; Grams, Julie; Rohrer, Tiffany; Martin, Karen; Dexheimer, Thomas; Sonkin, Dmitriy; Williams, John D.; Collins, Jerry M.; Doroshow, James H.; Teicher, Beverly A.
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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC) (vol 24, pg 986, 2022)
err2022-09-01
err5
PREAI
errHorak, Peter; Griffith, Malachi; Danos, Arpad M.; Pitel, Beth A.; Madhavan, Subha; Liu, Xuelu; Chow, Cynthia; Williams, Heather; Carmody, Leigh; Barrow-Laing, Lisa; Rieke, Damian; Kreutzfeldt, Simon; Stenzinger, Albrecht; Tamborero, David; Benary, Manuela; Rajagopal, Padma Sheila; Ida, Cristiane M.; Lesmana, Harry; Satgunaseelan, Laveniya; Merker, Jason D.; Tolstorukov, Michael Y.; Campregher, Paulo Vidal; Warner, Jeremy L.; Rao, Shruti; Natesan, Maya; Shen, Haolin; Venstrom, Jeffrey; Roy, Somak; Tao, Kayoko; Kanagal-Shamanna, Rashmi; Xu, Xinjie; Ritter, Deborah I.; Pagel, Kym; Krysiak, Kilannin; Dubuc, Adrian; Akkari, Yassmine M.; Li, Xuan Shirley; Lee, Jennifer; King, Ian; Raca, Gordana; Wagner, Alex H.; Li, Marylin M.; Plon, Sharon E.; Kulkarni, Shashikant; Griffith, Obi L.; Chakravarty, Debyani; Sonkin, Dmitriy
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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)癌症体细胞变异的致病性分类标准 (致癌性): 临床基因组资源 (ClinGen),癌症基因组学联盟 (CGC) 和癌症变异解释联盟 (VICC) 的联合建议
err2022-05-01
err111
errOAAI
errHorak, Peter; Griffith, Malachi; Danos, Arpad M.; Pitel, Beth A.; Madhavan, Subha; Liu, Xuelu; Chow, Cynthia; Williams, Heather; Carmody, Leigh; Barrow-Laing, Lisa; Rieke, Damian; Kreutzfeldt, Simon; Stenzinger, Albrecht; Tamborero, David; Benary, Manuela; Rajagopal, Padma Sheila; Ida, Cristiane M.; Lesmana, Harry; Satgunaseelan, Laveniya; Merker, Jason D.; Tolstorukov, Michael Y.; Campregher, Paulo Vidal; Warner, Jeremy L.; Rao, Shruti; Natesan, Maya; Shen, Haolin; Venstrom, Jeffrey; Roy, Somak; Tao, Kayoko; Kanagal-Shamanna, Rashmi; Xu, Xinjie; Ritter, Deborah, I; Pagel, Kym; Krysiak, Kilannin; Dubuc, Adrian; Akkari, Yassmine M.; Li, Xuan Shirley; Lee, Jennifer; King, Ian; Raca, Gordana; Wagner, Alex H.; Li, Marylin M.; Plon, Sharon E.; Kulkarni, Shashikant; Griffith, Obi L.; Chakravarty, Debyani; Sonkin, Dmitriy
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The Clinical Genome Resource (ClinGen) Somatic Cancer Clinical Domain Working Group
err2022-03-01
err0
errOAAI
errSaliba, Jason; Raca, Gordana; Roy, Angshumoy; King, Ian; Selvarajah, Shamini; Xu, Xinjie; Kanagal-Shamana, Rashmi; Satgunaseelan, Laveniya; Meredith, David; Evans, Mark; Church, Alanna; Terraf, Panieh; Akkari, Yassmine; Williams, Heather; Lin, Wan-Hsin; Kesserwan, Chimene; Ritter, Deborah; Krysiak, Kilannin; Danos, Arpad; Wagner, Alex; Li, Marilyn; Sonkin, Dmitriy; Berg, Jonathan; Plon, Sharon; Rehm, Heidi; Kulkarni, Shashikant; Govindan, Ramaswamy; Griffith, Obi; Griffith, Malachi
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TP53 isoform junction reads based analysis in malignant and normal contexts
err2021-08-26
err1
errOAAI
errVural, Suleyman; Chang, Lun-Ching; Yee, Laura M.; Sonkin, Dmitriy
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ClinGen somatic cancer working group: Disseminating standardized cancer molecular diagnostic data and evidence through global collaboration and expert curation
err2020-08-15
err0
PREAI
errRao, Shruti; Ritter, Deborah; Danos, Arpad; Raca, Gordana; Roy, Angshumoy; Krysiak, Kilannin; Lin, Wan-Hsin; Barnell, Erica; McCoy, Matthew; Pitel, Beth; Sonkin, Dmitriy; Wang, Jue; Hosseini, Seyed Ali; Selvarajah, Shamini; King, Ian; Kanagal-Shamana, Rashmi; Xu, Xinjie; Warner, Jeremy L.; Meric-Bernstam, Funda; Merker, Jason D.; Li, Marilyn; Wagner, Alex H.; Griffith, Malachi; Griffith, Obi L.; Kulkarni, Shashikant; Madhavan, Subha
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The Virtual Molecular Tumor Board of the Variant Interpretation for Cancer Consortium: A systematic gateway connecting cancer genome interpretation and progress in genomic knowledgebases in cancer
err2020-08-15
err0
PREAI
errPitel, Beth A.; Rao, Shruti; Fitz, Catherine Del Vecchio; Madhavan, Subha; Dientsmann, Rodrigo; Horak, Peter; King, Ian; Mockus, Susan M.; Raca, Gordana; Rieke, Damian T.; Rogan, Peter; Sonkin, Dmitriy; Tamborero, David; Vlachos, Ioannis S.; Walsh, Brian; Warner, Jeremy L.; Griffith, Malachi; Griffith, Obi L.; Chakravarty, Debyani; Wagner, Alex H.
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Harmonization standards from the Variant Interpretation for Cancer Consortium
err2020-08-15
err0
PREAI
errWagner, Alex H.; Hart, Reece K.; Babb, Larry; Freimuth, Robert R.; Coffman, Adam; Liang, Yonghao; Pitel, Beth; Roy, Angshumoy; Brush, Matthew; Lee, Jennifer; Lu, Anna; Coard, Thomas; Rao, Shruti; Ritter, Deborah; Walsh, Brian; Mockus, Susan; Horak, Peter; King, Ian; Sonkin, Dmitriy; Madhavan, Subha; Raca, Gordana; Chakravarty, Debyani; Griffith, Malachi; Griffith, Obi L.
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Neuroendocrine negative RB1 WT SCLC and LCNEC
err2020-08-15
err0
PREAI
errSonkin, Dmitriy; Thomas, Anish; Teicher, Beverly A.
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A standard operating procedure for the interpretation of oncogenicity/pathogenicity of somatic mutations
err2020-08-15
err1
PREAI
errHorak, Peter; Griffith, Malachi; Danos, Arpad; Pitel, Beth A.; Madhavan, Subha; Liu, Xuelu; Lee, Jennifer; Raca, Gordana; Li, Shirley; Wagner, Alex H.; Kulkarni, Shashikant; Griffith, Obi L.; Chakravarty, Debyani; Sonkin, Dmitriy
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Epigenome-wide DNA methylation analysis of small cell lung cancer cell lines suggests potential chemotherapy targets小细胞肺癌细胞系的表观基因组范围DNA甲基化分析提示潜在的化疗靶点
err2020-06-25
err49
errOAAI
errKrushkal, Julia; Silvers, Thomas; Reinhold, William C.; Sonkin, Dmitriy; Vural, Suleyman; Connelly, John; Varma, Sudhir; Meltzer, Paul S.; Kunkel, Mark; Rapisarda, Annamaria; Evans, David; Pommier, Yves; Teicher, Beverly A.
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A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
err2020-04-03
err100
errOAAI
errWagner, Alex H.; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P.; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Fitz, Catherine; Pitel, Beth A.; Sezerman, Ozman U.; Ellrott, Kyle; Warner, Jeremy L.; Rieke, Damian T.; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I.; Schriml, Lynn M.; Freimuth, Robert R.; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S.; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L.; Margolin, Adam A.
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Associations of epigenome-wide DNA methylation patterns with chemosensitivity and chemoresistance of small cell lung cancer cell lines
err2019-12-01
err0
PREAI
errKrushkal, Julia; Silvers, Thomas; Sonkin, Dmitriy; Vural, Suleyman; Connelly, John; Varma, Sudhir; Meltzer, Paul S.; Reinhold, William C.; Rapisarda, Annamaria; Evans, David; Pommier, Yves; Teicher, Beverly A.
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Standard operating procedure for curation and clinical interpretation of variants in cancer
err2019-11-29
err15
errOAAI
errDanos, Arpad M.; Krysiak, Kilannin; Barnell, Erica K.; Coffman, Adam C.; McMichael, Joshua F.; Kiwala, Susanna; Spies, Nicholas C.; Sheta, Lana M.; Pema, Shahil P.; Kujan, Lynzey; Clark, Kaitlin A.; Wollam, Amber Z.; Rao, Shruti; Ritter, Deborah I.; Sonkin, Dmitriy; Raca, Gordana; Lin, Wan-Hsin; Grisdale, Cameron J.; Kim, Raymond H.; Wagner, Alex H.; Madhavan, Subha; Griffith, Malachi; Griffith, Obi L.
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MutSpliceDB: A database of splice sites mutations effects
err2019-07-01
err0
PREAI
errPalmisano, Alida; Vural, Suleyman; Zhao, Yingdong; Sonkin, Dmitriy
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