Stephen Ficklin - Publications, H-index & Citations

Stephen Ficklin

washington state university

27H指数

835论文数

4.6K被引数

收录论文 36

发表时间

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2023-11-16

OAAI

Clarke, Jennifer L.; Cooper, Laurel D.; Poelchau, Monica F.; Berardini, Tanya Z.; Elser, Justin; Farmer, Andrew D.; Ficklin, Stephen; Kumari, Sunita; Laporte, Marie-Angelique; Nelson, Rex T.; Sadohara, Rie; Selby, Peter; Thessen, Anne E.; Whitehead, Brandon; Sen, Taner Z.

Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue

BMC GENOMICS

IF3.7

2022-05-06

OAAI

Hang, Yuqing; Burns, Josh; Shealy, Benjamin T.; Pauly, Rini; Ficklin, Stephen P.; Feltus, Frank A.

Evaluation of biogenic markers-based phenotyping for resistance to Aphanomyces root rot in field pea

INFORMATION PROCESSING IN AGRICULTURE

IF7.4

2022-03-01

OAAI

Marzougui, Afef; Rajendran, Abirami; Mattinson, D. Scott; Ma, Yu; McGee, Rebecca J.; Garcia-Perez, Manuel; Ficklin, Stephen P.; Sankaran, Sindhuja

Addressing noise in co-expression network construction 共表达网络构建中的噪声处理

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-11-30

OAAI

Burns, Joshua J. R.; Shealy, Benjamin T.; Greer, Mitchell S.; Hadish, John A.; McGowan, Matthew T.; Biggs, Tyler; Smith, Melissa C.; Feltus, F. Alex; Ficklin, Stephen P.

Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-07-12

OAAI

Staton, Margaret; Cannon, Ethalinda; Sanderson, Lacey-Anne; Wegrzyn, Jill; Anderson, Tavis; Buehler, Sean; Cobo-Simon, Irene; Faaberg, Kay; Grau, Emily; Guignon, Valentin; Gunoskey, Jessica; Inderski, Blake; Jung, Sook; Lager, Kelly; Main, Dorrie; Poelchau, Monica; Ramnath, Risharde; Richter, Peter; West, Joe; Ficklin, Stephen

Transcriptomics of Differential Ripening in 'd'Anjou' Pear (Pyrus communis L.)

FRONTIERS IN PLANT SCIENCE

IF4.8

2021-06-16

OAAI

Honaas, Loren; Hargarten, Heidi; Hadish, John; Ficklin, Stephen P.; Serra, Sara; Musacchi, Stefano; Wafula, Eric; Mattheis, James; dePamphilis, Claude W.; Rudell, David

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2020-07-04

OAAI

Spoor, Shawna; Wytko, Connor; Soto, Brian; Chen, Ming; Almsaeed, Abdullah; Condon, Bradford; Herndon, Nic; Hough, Heidi; Jung, Sook; Staton, Meg; Wegrzyn, Jill; Main, Dorrie; Feltus, F. Alex; Ficklin, Stephen P.

Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2020-01-21

OAAI

Condon, B.; Almsaeed, A.; Buehler, S.; Childers, C. P.; Ficklin, S. P.; Staton, M. E.; Poelchau, M. F.

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2019-07-22

OAAI

Spoor, Shawna; Cheng, Chen-Huai; Sanderson, Lacey-Anne; Condon, Bradford; Almsaeed, Abdullah; Chen, Ming; Bretaudeau, Anthony; Rasche, Helena; Jung, Sook; Main, Dorrie; Bett, Kirstin; Staton, Margaret; Wegrzyn, Jill L.; Feltus, F. Alex; Ficklin, Stephen P.

Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment

FRONTIERS IN PLANT SCIENCE

IF4.8

2019-06-25

OAAI

Wegrzyn, Jill L.; Staton, Margaret A.; Street, Nathaniel R.; Main, Dorrie; Grau, Emily; Herndon, Nic; Buehler, Sean; Falk, Taylor; Zaman, Sumaira; Ramnath, Risharde; Richter, Peter; Sun, Lang; Condon, Bradford; Almsaeed, Abdullah; Chen, Ming; Mannapperuma, Chanaka; Jung, Sook; Ficklin, Stephen

Growing and cultivating the forest genomics database, TreeGenes (vol 2018, bay084, 2018)

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2019-03-13

OAAI

Falk, Taylor; Herndon, Nic; Grau, Emily; Buehler, Sean; Richter, Peter; Zaman, Sumaira; Baker, Eliza M.; Ramnath, Risharde; Ficklin, Stephen; Staton, Margaret; Feltus, Frank A.; Jung, Sook; Main, Doreen; Wegrzyn, Jill L.

Co-expression networks provide insights into molecular mechanisms of postharvest temperature modulation of apple fruit to reduce superficial scald

POSTHARVEST BIOLOGY AND TECHNOLOGY

IF6.8

2019-03-01

OAAI

Honaas, Loren A.; Hargarten, Heidi L.; Ficklin, Stephen P.; Hadish, John A.; Wafula, Eric; dePamphilis, Claude W.; Mattheis, James P.; Rudell, David R.

Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2019-01-01

OAAI

Buble, Katheryn; Jung, Sook; Humann, Jodi L.; Yu, Jing; Cheng, Chun-Huai; Lee, Taein; Ficklin, Stephen P.; Hough, Heidi; Condon, Bradford; Staton, Margaret E.; Wegrzyn, Jill L.; Main, Dorrie

GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks 多模态基因共表达网络成对高斯混合模型的GPU实现

IEEE ACCESS

IF3.6

2019-01-01

OAAI

Shealy, Benjamin T.; Burns, Josh J. R.; Smith, Melissa C.; Feltus, F. Alex; Ficklin, Stephen P.

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

NUCLEIC ACIDS RESEARCH

IF13.1

2018-10-24

319

OAAI

Jung, Sook; Lee, Taein; Cheng, Chun-Huai; Buble, Katheryn; Zheng, Ping; Yu, Jing; Humann, Jodi; Ficklin, Stephen P.; Gasic, Ksenija; Scott, Kristin; Frank, Morgan; Ru, Sushan; Hough, Heidi; Evans, Kate; Peace, Cameron; Olmstead, Mercy; DeVetter, Lisa W.; McFerson, James; Coe, Michael; Wegrzyn, Jill L.; Staton, Margaret E.; Abbott, Albert G.; Main, Dorrie

Making sense of performance in in-memory computing frameworks for scientific data analysis: A case study of the spark system

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

IF4

2018-10-01

OAAI

Zhang, Xuechen; Khanal, Ujjwal; Zhao, Xinghui; Ficklin, Stephen

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-09-18

OAAI

Harper, Lisa; Campbell, Jacqueline; Cannon, Ethalinda K. S.; Jung, Sook; Poelchau, Monica; Walls, Ramona; Andorf, Carson; Arnaud, Elizabeth; Berardini, Tanya Z.; Birkett, Clayton; Cannon, Steve; Carson, James; Condon, Bradford; Cooper, Laurel; Dunn, Nathan; Elsik, Christine G.; Farmer, Andrew; Ficklin, Stephen P.; Grant, David; Grau, Emily; Herndon, Nic; Hu, Zhi-Liang; Humann, Jodi; Jaiswal, Pankaj; Jonquet, Clement; Laporte, Marie-Angelique; Larmande, Pierre; Lazo, Gerard; McCarthy, Fiona; Menda, Naama; Mungall, Christopher J.; Munoz-Torres, Monica C.; Naithani, Sushma; Nelson, Rex; Nesdill, Daureen; Park, Carissa; Reecy, James; Reiser, Leonore; Sanderson, Lacey-Anne; Sen, Taner Z.; Staton, Margaret; Subramaniam, Sabarinath; Tello-Ruiz, Marcela Karey; Unda, Victor; Unni, Deepak; Wang, Liya; Ware, Doreen; Wegrzyn, Jill; Williams, Jason; Woodhouse, Margaret; Yu, Jing; Main, Doreen

Growing and cultivating the forest genomics database, TreeGenes

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-09-18

OAAI

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-12-09

OAAI

Jung, Sook; Lee, Taein; Cheng, Chun-Huai; Ficklin, Stephen; Yu, Jing; Humann, Jodi; Main, Dorrie

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study

SCIENTIFIC REPORTS

IF3.9

2017-08-17

OAAI

Ficklin, Stephen P.; Dunwoodie, Leland J.; Poehlman, William L.; Watson, Christopher; Roche, Kimberly E.; Feltus, F. Alex

研究方向