Alan Archibald - Publications, H-index & Citations

Alan Archibald

university of edinburgh

64H指数

429论文数

1.7W被引数

收录论文 60

发表时间

Identification of cis-regulatory elements provides insights into tissue-specific gene regulation in the sheep genome 对顺式调控元件的鉴定为揭示绵羊基因组中组织特异性基因调控提供了见解。

Nature Communications

IF15.7

2026-03-16

OAAI

Shangqian Xie; Kimberly M. Davenport; Mazdak Salavati; Alex Caulton; Emily L. Clark; Alan L. Archibald; Shannon M. Clarke; Rudiger Brauning; Alisha T. Massa; Michelle R. Mousel; Stephen N. White; Kim C. Worley; Gordon K. Murdoch; Gabrielle Becker; Morgan R. Stegmiller; Sarem F. Khilji; Katie A. Shira; Temitayo A. Olagunju; Tracy Hadfield; Stephanie D. McKay; Benjamin D. Rosen; Noelle E. Cockett; Timothy P. L. Smith; Brenda M. Murdoch

Transcriptomic characterisation of acute myeloid leukemia cell lines bearing the same t(9;11) driver mutation reveals different molecular signatures

BMC GENOMICS

IF3.7

2025-03-25

OAAI

Georges, Elise; Ho, William; Iturritza, Miren Urrutia; Eory, Lel; Malysz, Kamila; Sobhiafshar, Ulduz; Archibald, Alan L.; Macqueen, Daniel J.; Shih, Barbara; Garrick, David; Vernimmen, Douglas

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas 太平洋牡蛎Crassostrea gigas的染色体水平基因组组装

GIGASCIENCE

IF3.9

2021-03-25

OAAI

Penaloza, Carolina; Gutierrez, Alejandro P.; Eory, Lel; Wang, Shan; Guo, Ximing; Archibald, Alan L.; Bean, Tim P.; Houston, Ross D.

From FAANG to fork: application of highly annotated genomes to improve farmed animal production 从FAANG到fork: 应用高度注释的基因组来改善养殖动物的生产

GENOME BIOLOGY

IF9.4

2020-11-24

OAAI

Clark, Emily L.; Archibald, Alan L.; Daetwyler, Hans D.; Groenen, Martien A. M.; Harrison, Peter W.; Houston, Ross D.; Kuhn, Christa; Lien, Sigbjorn; Macqueen, Daniel J.; Reecy, James M.; Robledo, Diego; Watson, Mick; Tuggle, Christopher K.; Giuffra, Elisabetta

Illuminating the dark side of the human transcriptome with long read transcript sequencing 用长读段转录本测序照亮人类转录组的阴暗面

BMC GENOMICS

IF3.7

2020-10-30

OAAI

Kuo, Richard I.; Cheng, Yuanyuan; Zhang, Runxuan; Brown, John W. S.; Smith, Jacqueline; Archibald, Alan L.; Burt, David W.

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication 水牛和全球牛品种的全基因组分析突出了驯化的收敛特征

NATURE COMMUNICATIONS

IF15.7

2020-09-21

OAAI

Dutta, Prasun; Talenti, Andrea; Young, Rachel; Jayaraman, Siddharth; Callaby, Rebecca; Jadhav, Santosh Kumar; Dhanikachalam, Velu; Manikandan, Mayakannan; Biswa, Bhim B.; Low, Wai Y.; Williams, John L.; Cook, Elizabeth; Toye, Phil; Wall, Eileen; Djikeng, Appolinaire; Marshall, Karen; Archibald, Alan L.; Gokhale, Suresh; Kumar, Satish; Hume, David A.; Prendergast, James G. D.

Pigs Lacking the Scavenger Receptor Cysteine-Rich Domain 5 of CD163 Are Resistant to Porcine Reproductive and Respiratory Syndrome Virus 1 Infection (vol 92, JVI.00415-18, 2018)缺乏CD163的清道夫受体富含半胱氨酸结构域5的猪对猪繁殖与呼吸综合征病毒1感染具有抗性 (第92卷，JVI.00415-18，2018)

JOURNAL OF VIROLOGY

IF3.8

2020-07-16

OAAI

Burkard, Christine; Opriessnig, Tanja; Mileham, Alan J.; Stadejek, Tomasz; Ait-Ali, Tahar; Lillico, Simon G.; Whitelaw, C. Bruce A.; Archibald, Alan L.

An improved pig reference genome sequence to enable pig genetics and genomics research 一种改进的猪参考基因组序列实现猪遗传学和基因组学研究

GIGASCIENCE

IF3.9

2020-06-16

195

OAAI

Warr, Amanda; Affara, Nabeel; Aken, Bronwen; Beiki, Hamid; Bickhart, Derek M.; Billis, Konstantinos; Chow, William; Eory, Lel; Finlayson, Heather A.; Flicek, Paul; Giron, Carlos G.; Griffin, Darren K.; Hall, Richard; Hannum, Greg; Hourlier, Thibaut; Howe, Kerstin; Hume, David A.; Izuogu, Osagie; Kim, Kristi; Koren, Sergey; Liu, Haibou; Manchanda, Nancy; Martin, Fergal J.; Nonneman, Dan J.; O'Connor, Rebecca E.; Phillippy, Adam M.; Rohrer, Gary A.; Rosen, Benjamin D.; Rund, Laurie A.; Sargent, Carole A.; Schook, Lawrence B.; Schroeder, Steven G.; Schwartz, Ariel S.; Skinner, Ben M.; Talbot, Richard; Tseng, Elizabeth; Tuggle, Christopher K.; Watson, Mick; Smith, Timothy P. L.; Archibald, Alan L.

Genome-wide SNP data unveils the globalization of domesticated pigs (vol 49, 71, 2017)全基因组SNP数据揭示了家猪的全球化 (vol 49，71，2017)

GENETICS SELECTION EVOLUTION

IF3.1

2020-06-04

OAAI

Yang, Bin; Cui, Leilei; Perez-Enciso, Miguel; Traspov, Aleksei; Crooijmans, Richard P. M. A.; Zinovieva, Natalia; Schook, Lawrence B.; Archibald, Alan; Gatphayak, Kesinee; Knorr, Christophe; Triantafyllidis, Alex; Alexandri, Panoraia; Semiadi, Gono; Hanotte, Olivier; Dias, Deodalia; Dovc, Peter; Uimari, Pekka; Iacolina, Laura; Scandura, Massimo; Groenen, Martien A. M.; Huang, Lusheng; Megens, Hendrik-Jan

Metagenomic sequencing of clinical samples reveals a single widespread clone of Lawsonia intracellularis responsible for porcine proliferative enteropathy 临床样本的宏基因组测序揭示了负责猪增生性肠病的胞内劳森氏菌的单个广泛克隆

MICROBIAL GENOMICS

IF4

2020-04-01

OAAI

Bengtsson, Rebecca J.; Wee, Bryan A.; Yebra, Gonzalo; Bacigalupe, Rodrigo; Watson, Eleanor; Guedes, Roberto M. C.; Jacobson, Magdalena; Stadejek, Tomasz; Archibald, Alan L.; Fitzgerald, J. Ross; Ait-Ali, Tahar

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap 动物基因组的功能注释 (FAANG): 当前成就和路线图

ANNUAL REVIEW OF ANIMAL BIOSCIENCES

IF0

2019-02-15

131

PREAI

Giuffra, Elisabetta; Tuggle, Christopher K.; Archibald, Alan L.; Acloque, Herve; Chamberlain, Amanda J.; Cochrane, Guy; Daetwyler, Hans D.; Djebali, Sarah; Eory, Lel; Foissac, Sylvain; Goddard, Michael E.; Groenen, Martien A. M.; Halstead, Michelle; Harrison, Peter W.; Hayes, Benjamin J.; Kern, Colin; Khatib, Hasan; Kuo, Richard I.; MacHugh, David E.; Macleod, Iona M.; Madsen, Ole; Reecy, James M.; Ross, Pablo J.; Watson, Mick; Wells, Jerry M.; Zhou, Huaijun

Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs 在肌肉生长抑制素基因过早停止突变时平衡选择是猪隐性腿无力综合征的基础

PLOS GENETICS

IF3.7

2019-01-30

OAAI

Matika, Oswald; Robledo, Diego; Pong-Wong, Ricardo; Bishop, Stephen C.; Riggio, Valentina; Finlayson, Heather; Lowe, Natalie R.; Hoste, Annabelle E.; Walling, Grant A.; del Pozo, Jorge; Archibald, Alan L.; Woolliams, John A.; Houston, Ross D.

Livestock 2.0-genome editing for fitter, healthier, and more productive farmed animals 家畜2.0-基因组编辑更健康，更高效的养殖动物

GENOME BIOLOGY

IF9.4

2018-11-26

OAAI

Tait-Burkard, Christine; Doeschl-Wilson, Andrea; McGrew, Mike J.; Archibald, Alan L.; Sang, Helen M.; Houston, Ross D.; Whitelaw, C. Bruce; Watson, Mick

Pigs Lacking the Scavenger Receptor Cysteine-Rich Domain 5 of CD163 Are Resistant to Porcine Reproductive and Respiratory Syndrome Virus 1 Infection 缺乏CD163的清道夫受体富含半胱氨酸的结构域5的猪对猪繁殖与呼吸综合征病毒1感染具有抗性

JOURNAL OF VIROLOGY

IF3.8

2018-08-15

163

OAAI

Burkard, Christine; Opriessnig, Tanja; Mileham, Alan J.; Stadejek, Tomasz; Ait-Ali, Tahar; Lillico, Simon G.; Whitelaw, C. Bruce A.; Archibald, Alan L.

Genome-wide SNP data unveils the globalization of domesticated pigs 全基因组SNP数据揭示了家猪的全球化

GENETICS SELECTION EVOLUTION

IF3.1

2017-09-21

118

OAAI

A high resolution atlas of gene expression in the domestic sheep (Ovis aries)家养绵羊 (Ovis aries) 基因表达的高分辨率图谱

PLOS GENETICS

IF3.7

2017-09-15

108

OAAI

Clark, Emily L.; Bush, Stephen J.; McCulloch, Mary E. B.; Farquhar, Iseabail L.; Young, Rachel; Lefevre, Lucas; Pridans, Clare; Tsang, Hiu; Wu, Chunlei; Afrasiabi, Cyrus; Watson, Mick; Whitelaw, C. Bruce; Freeman, Tom C.; Summers, Kim M.; Archibald, Alan L.; Hume, David A.

Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human 鸡的标准化长读RNA测序揭示了与人类相似的转录组复杂性

BMC GENOMICS

IF3.7

2017-04-24

101

OAAI

Kuo, Richard I.; Tseng, Elizabeth; Eory, Lel; Paton, Ian R.; Archibald, Alan L.; Burt, David W.

Precision engineering for PRRSV resistance in pigs: Macrophages from genome edited pigs lacking CD163 SRCR5 domain are fully resistant to both PRRSV genotypes while maintaining biological function 猪PRRSV抗性的精确工程: 缺乏CD163 SRCR5结构域的基因组编辑猪的巨噬细胞完全抵抗两种PRRSV基因型，同时保持生物学功能

PLOS PATHOGENS

IF4.9

2017-02-23

324

OAAI

Burkard, Christine; Lillico, Simon G.; Reid, Elizabeth; Jackson, Ben; Mileham, Alan J.; Ait-Ali, Tahar; Whitelaw, C. Bruce A.; Archibald, Alan L.

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)接种猪繁殖与呼吸综合征病毒 (PRRSV) 疫苗后，具有高和低ifn-γ 应答的猪中转录特征的不同功能富集

VETERINARY RESEARCH

IF3.5

2016-10-20

OAAI

Ait-Ali, Tahar; Diaz, Ivan; Soldevila, Ferran; Cano, Esmeralda; Li, Yanli; Wilson, Alison D.; Giotti, Bruno; Archibald, Alan L.; Mateu, Enric; Darwich, Laila

Characterization of the Interactome of the Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein 2 Reveals the Hyper Variable Region as a Binding Platform for Association with 14-3-3 Proteins 猪繁殖与呼吸综合征病毒非结构蛋白2的相互作用组的表征揭示了高变区作为与14-3-3蛋白结合的结合平台

JOURNAL OF PROTEOME RESEARCH

IF3.6

2016-04-12

OAAI

Xiao, Yihong; Wu, Weining; Gao, Jiming; Smith, Nikki; Burkard, Christine; Xia, Dong; Zhang, Minxia; Wane, Chengbao; Archibald, Alan; Digard, Paul; Zhou, En-min; Hiscox, Julian A.

研究方向