Zhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R.; Lee, Alexandra J.; Kacsoh, Balint Z.; Crocker, Alex W.; Lewis, Kimberley A.; Georghiou, George; Nguyen, Huy N.; Hamid, Md Nafiz; Davis, Larry; Dogan, Tunca; Atalay, Volkan; Rifaioglu, Ahmet S.; Dalkiran, Alperen; Atalay, Rengul Cetin; Zhang, Chengxin; Hurto, Rebecca L.; Freddolino, Peter L.; Zhang, Yang; Bhat, Prajwal; Supek, Fran; Fernandez, Jose M.; Gemovic, Branislava; Perovic, Vladimir R.; Davidovic, Radoslav S.; Sumonja, Neven; Veljkovic, Nevena; Asgari, Ehsaneddin; Mofrad, Mohammad R. K.; Profiti, Giuseppe; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Boecker, Florian; Schoof, Heiko; Kahanda, Indika; Thurlby, Natalie; McHardy, Alice C.; Renaux, Alexandre; Saidi, Rabie; Gough, Julian; Freitas, Alex A.; Antczak, Magdalena; Fabris, Fabio; Wass, Mark N.; Hou, Jie; Cheng, Jianlin; Wang, Zheng; Romero, Alfonso E.; Paccanaro, Alberto; Yang, Haixuan; Goldberg, Tatyana; Zhao, Chenguang; Holm, Liisa; Toronen, Petri; Medlar, Alan J.; Zosa, Elaine; Borukhov, Itamar; Novikov, Ilya; Wilkins, Angela; Lichtarge, Olivier; Chi, Po-Han; Tseng, Wei-Cheng; Linial, Michal; Rose, Peter W.; Dessimoz, Christophe; Vidulin, Vedrana; Dzeroski, Saso; Sillitoe, Ian; Das, Sayoni; Lees, Jonathan Gill; Jones, David T.; Wan, Cen; Cozzetto, Domenico; Fa, Rui; Torres, Mateo; Vesztrocy, Alex Warwick; Rodriguez, Jose Manuel; Tress, Michael L.; Frasca, Marco; Notaro, Marco; Grossi, Giuliano; Petrini, Alessandro; Re, Matteo; Valentini, Giorgio; Mesiti, Marco; Roche, Daniel B.; Reeb, Jonas; Ritchie, David W.; Aridhi, Sabeur; Alborzi, Seyed Ziaeddin; Devignes, Marie-Dominique; Koo, Da Chen Emily; Bonneau, Richard; Gligorijevic, Vladimir; Barot, Meet; Fang, Hai; Toppo, Stefano; Lavezzo, Enrico; Falda, Marco; Berselli, Michele; Tosatto, Silvio C. E.; Carraro, Marco; Piovesan, Damiano; Rehman, Hafeez Ur; Mao, Qizhong; Zhang, Shanshan; Vucetic, Slobodan; Black, Gage S.; Jo, Dane; Suh, Erica; Dayton, Jonathan B.; Larsen, Dallas J.; Omdahl, Ashton R.; McGuffin, Liam J.; Brackenridge, Danielle A.; Babbitt, Patricia C.; Yunes, Jeffrey M.; Fontana, Paolo; Zhang, Feng; Zhu, Shanfeng; You, Ronghui; Zhang, Zihan; Dai, Suyang; Yao, Shuwei; Tian, Weidong; Cao, Renzhi; Chandler, Caleb; Amezola, Miguel; Johnson, Devon; Chang, Jia-Ming; Liao, Wen-Hung; Liu, Yi-Wei; Pascarelli, Stefano; Frank, Yotam; Hoehndorf, Robert; Kulmanov, Maxat; Boudellioua, Imane; Politano, Gianfranco; Di Carlo, Stefano; Benso, Alfredo; Hakala, Kai; Ginter, Filip; Mehryary, Farrokh; Kaewphan, Suwisa; Bjorne, Jari; Moen, Hans; Tolvanen, Martti E. E.; Salakoski, Tapio; Kihara, Daisuke; Jain, Aashish; Smuc, Tomislav; Altenhoff, Adrian; Ben-Hur, Asa; Rost, Burkhard; Brenner, Steven E.; Orengo, Christine A.; Jeffery, Constance J.; Bosco, Giovanni; Hogan, Deborah A.; Martin, Maria J.; O'Donovan, Claire; Mooney, Sean D.; Greene, Casey S.; Radivojac, Predrag; Friedberg, Iddo

Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses

不同水稻品种的转录组和细胞生理分析为适应性和盐分胁迫反应提供了新的见解

FRONTIERS IN PLANT SCIENCE

IF4.8

2018-03-0561

OAAI

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

蛋白质功能预测方法的扩展评估显示准确性有所提高

GENOME BIOLOGY

IF9.4

2016-09-07280

OAAI

Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Toronen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching-Tai; Hsu, Wen-Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Dukka, B. K. C.; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian-Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo-Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; ElShal, Sarah; Tranchevent, Leon-Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamas; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeno-Cortes, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet-Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio C. E.; del Pozo, Angela; Fernandez, Jose M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida-e-Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Joerg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O'Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag

Eliciting the Functional Taxonomy from protein annotations and taxa

SCIENTIFIC REPORTS

IF3.9

2016-08-184

OAAI

Enhancing protein function prediction with taxonomic constraints - The Argot2.5 web server

METHODS

IF4.3

2016-01-0145

PREAI

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

MICCA: 用于宏基因组数据分类分析的完整而准确的软件

SCIENTIFIC REPORTS

IF3.9

2015-05-19211

OAAI

Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest

将基因组学和生态学联系起来以研究入侵果蝇害虫的复杂进化

GENOME BIOLOGY AND EVOLUTION

IF2.8

2013-03-15131

OAAI

A large-scale evaluation of computational protein function prediction

计算蛋白质功能预测的大规模评估

NATURE METHODS

IF32.1

2013-01-27755

OAAI

Radivojac, Predrag; Clark, Wyatt T.; Oron, Tal Ronnen; Schnoes, Alexandra M.; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M.; Talwalkar, Ameet S.; Repo, Susanna; Souza, Michael L.; Piovesan, Damiano; Casadio, Rita; Wang, Zheng; Cheng, Jianlin; Fang, Hai; Goughl, Julian; Koskinen, Patrik; Toronen, Petri; Nokso-Koivisto, Jussi; Holm, Liisa; Cozzetto, Domenico; Buchan, Daniel W. A.; Bryson, Kevin; Jones, David T.; Limaye, Bhakti; Inamdar, Harshal; Datta, Avik; Manjari, Sunitha K.; Joshi, Rajendra; Chitale, Meghana; Kihara, Daisuke; Lisewski, Andreas M.; Erdin, Serkan; Venner, Eric; Lichtarge, Olivier; Rentzsch, Robert; Yang, Haixuan; Romero, Alfonso E.; Bhat, Prajwal; Paccanaro, Alberto; Hamp, Tobias; Kassner, Rebecca; Seemayer, Stefan; Vicedo, Esmeralda; Schaefer, Christian; Achten, Dominik; Auer, Florian; Boehm, Ariane; Braun, Tatjana; Hecht, Maximilian; Heron, Mark; Hoenigschmid, Peter; Hopf, Thomas A.; Kaufmann, Stefanie; Kiening, Michael; Krompass, Denis; Landerer, Cedric; Mahlich, Yannick; Roos, Manfred; Bjorne, Jari; Salakoski, Tapio; Wong, Andrew; Shatkay, Hagit; Gatzmann, Fanny; Sommer, Ingolf; Wass, Mark N.; Sternberg, Michael J. E.; Skunca, Nives; Supek, Fran; Bosnjak, Matko; Panov, Pance; Dzeroski, Saso; Smuc, Tomislav; Kourmpetis, Yiannis A. I.; van Dijk, Aalt D. J.; ter Braak, Cajo J. F.; Zhou, Yuanpeng; Gong, Qingtian; Dong, Xinran; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Di Camillo, Barbara; Toppo, Stefano; Lan, Liang; Djuric, Nemanja; Guo, Yuhong; Vucetic, Slobodan; Bairoch, Amos; Linial, Michal; Babbitt, Patricia C.; Brenner, Steven E.; Orengo, Christine; Rost, Burkhard; Mooney, Sean D.; Friedberg, Iddo

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data

BRIEFINGS IN BIOINFORMATICS

IF7.7

2012-11-2163

OAAI

Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes

BMC GENOMICS

IF3.7

2012-01-01114

OAAI

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data

焦磷酸测序数据全基因组组装算法的比较分析

BRIEFINGS IN BIOINFORMATICS

IF7.7

2011-10-2120

The genome of the domesticated apple (Malus x domestica Borkh.)

驯化苹果 (Malus x domestica bokh.) 的基因组

NATURE GENETICS

IF31.8

2010-08-291.9K

OAAI

Velasco, Riccardo; Zharkikh, Andrey; Affourtit, Jason; Dhingra, Amit; Cestaro, Alessandro; Kalyanaraman, Ananth; Fontana, Paolo; Bhatnagar, Satish K.; Troggio, Michela; Pruss, Dmitry; Salvi, Silvio; Pindo, Massimo; Baldi, Paolo; Castelletti, Sara; Cavaiuolo, Marina; Coppola, Giuseppina; Costa, Fabrizio; Cova, Valentina; Dal Ri, Antonio; Goremykin, Vadim; Komjanc, Matteo; Longhi, Sara; Magnago, Pierluigi; Malacarne, Giulia; Malnoy, Mickael; Micheletti, Diego; Moretto, Marco; Perazzolli, Michele; Si-Ammour, Azeddine; Vezzulli, Silvia; Zini, Elena; Eldredge, Glenn; Fitzgerald, Lisa M.; Gutin, Natalia; Lanchbury, Jerry; Macalma, Teresita; Mitchell, Jeff T.; Reid, Julia; Wardell, Bryan; Kodira, Chinnappa; Chen, Zhoutao; Desany, Brian; Niazi, Faheem; Palmer, Melinda; Koepke, Tyson; Jiwan, Derick; Schaeffer, Scott; Krishnan, Vandhana; Wu, Changjun; Chu, Vu T.; King, Stephen T.; Vick, Jessica; Tao, Quanzhou; Mraz, Amy; Stormo, Aimee; Stormo, Keith; Bogden, Robert; Ederle, Davide; Stella, Alessandra; Vecchietti, Alberto; Kater, Martin M.; Masiero, Simona; Lasserre, Pauline; Lespinasse, Yves; Allan, Andrew C.; Bus, Vincent; Chagne, David; Crowhurst, Ross N.; Gleave, Andrew P.; Lavezzo, Enrico; Fawcett, Jeffrey A.; Proost, Sebastian; Rouze, Pierre; Sterck, Lieven; Toppo, Stefano; Lazzari, Barbara; Hellens, Roger P.; Durel, Charles-Eric; Gutin, Alexander; Bumgarner, Roger E.; Gardiner, Susan E.; Skolnick, Mark; Egholm, Michael; Van de Peer, Yves; Salamini, Francesco; Viola, Roberto

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar

BMC GENOMICS

IF3.7

2010-03-2618

OAAI

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs

BMC PLANT BIOLOGY

IF4.8

2009-01-019

OAAI

Paolo Fontana

个人简介

教育背景

工作经历

荣誉奖项

研究方向