未登录 cyMAEv2: learning robust cell representations in mass cytometry without supervision Kim, Jaesik; Ionita, Matei; Lee, Matthew Eric; Leiby, Jacob S.; Huang, Yidi; Lee, Jonghyun; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Painter, Mark M.; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon 分享 收藏
Representing immune profiles with self-supervised set representation learning Lee, Matthew Eric; Ionita, Matei; Kim, Jaesik; Lee, Jonghyun; Huang, Yidi; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Kim, Dokyoon; Wherry, E. John 分享 收藏
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Automated cytometric gating with human-level performance using bivariate segmentation 使用双变量分割实现具有人类水平性能的自动化细胞计量学门控 Chen, Jiong; Ionita, Matei; Feng, Yanbo; Lu, Yinfeng; Orzechowski, Patryk; Garai, Sumita; Hassinger, Kenneth; Bao, Jingxuan; Wen, Junhao; Duong-Tran, Duy; Wagenaar, Joost; Mckeague, Michelle L.; Painter, Mark M.; Mathew, Divij; Pattekar, Ajinkya; Meyer, Nuala J.; Wherry, E. John; Greenplate, Allison R.; Shen, Li 分享 收藏
Cytometry masked autoencoder: An accurate and interpretable automated immunophenotyper Kim, Jaesik; Ionita, Matei; Lee, Matthew; Mckeague, Michelle L.; Pattekar, Ajinkya; Painter, Mark M.; Wagenaar, Joost; Truong, Van; Norton, Dylan T.; Mathew, Divij; Nam, Yonghyun; Apostolidis, Sokratis A.; Clendenin, Cynthia; Orzechowski, Patryk; Jung, Sang-Hyuk; Woerner, Jakob; Ittner, Caroline A. G.; Turner, Alexandra P.; Esperanza, Mika; Dunn, Thomas G.; Mangalmurti, Nilam S.; Reilly, John P.; Meyer, Nuala J.; Calfee, Carolyn S.; Liu, Kathleen D.; Matthy, Michael A.; Swigart, Lamorna Brown; Burnham, Ellen L.; Mckeehan, Jeffrey; Gandotra, Sheetal; Russel, Derek W.; Gibbs, Kevin W.; Thomas, Karl W.; Barot, Harsh; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon 分享 收藏
Immunologic Predictors of Vaccine Responsiveness in Patients With Lymphoma and Chronic Lymphocytic Leukemia 淋巴瘤和慢性淋巴细胞白血病患者疫苗反应性的免疫学预测指标 Chong, Elise A.; Kumashie, Kingsley Gideon; Chong, Emeline R.; Fabrizio, Joseph; Gupta, Aditi; Svoboda, Jakub; Barta, Stefan K.; Walsh, Kristy M.; Napier, Ellen B.; Lundberg, Rachel K.; Nasta, Sunita D.; Gerson, James N.; Landsburg, Daniel J.; Gonzalez, Joyce; Gaano, Andrew; Weirick, Madison E.; Mcallister, Christopher M.; Awofolaju, Moses; John, Gavin N.; Kammerman, Shane C.; Novacek, Josef; Pajarillo, Raymone; Lundgreen, Kendall A.; Tanenbaum, Nicole; Gouma, Sigrid; Drapeau, Elizabeth M.; Adamski, Sharon; D'Andrea, Kurt; Pattekar, Ajinkya; Hicks, Amanda; Korte, Scott; Sharma, Harsh; Herring, Sarah; Williams, Justine C.; Hamilton, Jacob T.; Bates, Paul; Hensley, Scott E.; Luning Prak, Eline T.; Greenplate, Allison R.; Wherry, E. John; Schuster, Stephen J.; Ruella, Marco; Vella, Laura A. 分享 收藏
Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment (vol 24, pg 1947, 2023) Thomson, Zachary; He, Ziyuan; Swanson, Elliott; Henderson, Katherine; Phalen, Cole; Zaim, Samir Rachid; Pebworth, Mark-Phillip; Okada, Lauren Y.; Heubeck, Alexander T.; Roll, Charles R.; Hernandez, Veronica; Weiss, Morgan; Genge, Palak C.; Reading, Julian; Giles, Josephine R.; Manne, Sasikanth; Dougherty, Jeanette; Jasen, C. J.; Greenplate, Allison R.; Becker, Lynne A.; Graybuck, Lucas T.; Vasaikar, Suhas V.; Szeto, Gregory L.; Savage, Adam K.; Speake, Cate; Buckner, Jane H.; Li, Xiao-jun; Bumol, Thomas F.; Wherry, E. John; Torgerson, Troy R.; Vella, Laura A.; Henrickson, Sarah E.; Skene, Peter J.; Gustafson, Claire E. 分享 收藏
Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment Thomson, Zachary; He, Ziyuan; Swanson, Elliott; Henderson, Katherine; Phalen, Cole; Zaim, Samir Rachid; Pebworth, Mark-Phillip; Okada, Lauren Y.; Heubeck, Alexander T.; Roll, Charles R.; Hernandez, Veronica; Weiss, Morgan; Genge, Palak C.; Reading, Julian; Giles, Josephine R.; Manne, Sasikanth; Dougherty, Jeanette; Jasen, C. J.; Greenplate, Allison R.; Becker, Lynne A.; Graybuck, Lucas T.; Vasaikar, Suhas V.; Szeto, Gregory L.; Savage, Adam K.; Speake, Cate; Buckner, Jane H.; Li, Xiao-jun; Bumol, Thomas F.; Wherry, E. John; Torgerson, Troy R.; Vella, Laura A.; Henrickson, Sarah E.; Skene, Peter J.; Gustafson, Claire E. 分享 收藏
Modulation of the Immune Response to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination by Nonsteroidal Anti-Inflammatory Drugs Skarke, Carsten; Lordan, Ronan; Barekat, Kayla; Naik, Amruta; Mathew, Divij; Ohtani, Takuya; Greenplate, Allison R.; Grant, Gregory R.; Lahens, Nicholas F.; Gouma, Sigrid; Troisi, Elizabeth; Sengupta, Arjun; Weljie, Aalim M.; Meng, Wenzhao; Prak, Eline T. Luning; Lundgreen, Kendall; Bates, Paul; Meng, Hu; FitzGerald, Garret A. 分享 收藏
A boost with SARS-CoV-2 BNT162b2 mRNA vaccine elicits strong humoral responses independently of the interval between the first two doses Tauzin, Alexandra; Gong, Shang Yu; Chatterjee, Debashree; Ding, Shilei; Painter, Mark M.; Goel, Rishi R.; Beaudoin-Bussieres, Guillaume; Marchitto, Lorie; Boutin, Marianne; Laumaea, Annemarie; Okeny, James; Gendron-Lepage, Gabrielle; Bourassa, Catherine; Medjahed, Halima; Goyette, Guillaume; Williams, Justine C.; Bo, Yuxia; Gokool, Laurie; Morrisseau, Chantal; Arlotto, Pascale; Bazin, Renee; Fafard, Judith; Tremblay, Cecile; Kaufmann, Daniel E.; De Serres, Gaston; Richard, Jonathan; Cote, Marceline; Duerr, Ralf; Martel-Laferriere, Valerie; Greenplate, Allison R.; Wherry, E. John; Finzi, Andres 分享 收藏
SARS-CoV-2 infections elicit higher levels of original antigenic sin antibodies compared with SARS-CoV-2 mRNA vaccinations Anderson, Elizabeth M.; Li, Shuk Hang; Awofolaju, Moses; Eilola, Theresa; Goodwin, Eileen; Bolton, Marcus J.; Gouma, Sigrid; Manzoni, Tomaz B.; Hicks, Philip; Goel, Rishi R.; Painter, Mark M.; Apostolidis, Sokratis A.; Mathew, Divij; Dunbar, Debora; Fiore, Danielle; Brock, Amanda; Weaver, JoEllen; Millar, John S.; DerOhannessian, Stephanie; Greenplate, Allison R.; Frank, Ian; Rader, Daniel J.; Wherry, E. John; Bates, Paul; Hensley, Scott E. 分享 收藏
Antigenic and virological properties of an H3N2 variant that continues to dominate the 2021-22 Northern Hemisphere influenza season Bolton, Marcus J.; Ort, Jordan T.; McBride, Ryan; Swanson, Nicholas J.; Wilson, Jo; Awofolaju, Moses; Furey, Colleen; Greenplate, Allison R.; Drapeau, Elizabeth M.; Pekosz, Andrew; Paulson, James C.; Hensley, Scott E. 分享 收藏
Signaling Through FcγRIIA and the C5a-C5aR Pathway Mediate Platelet Hyperactivation in COVID-19 Apostolidis, Sokratis A.; Sarkar, Amrita; Giannini, Heather M.; Goel, Rishi R.; Mathew, Divij; Suzuki, Aae; Baxter, Amy E.; Greenplate, Allison R.; Alanio, Cecile; Abdel-Hakeem, Mohamed; Oldridge, Derek A.; Giles, Josephine R.; Wu, Jennifer E.; Chen, Zeyu; Huang, Yinghui Jane; Belman, Jonathan; Pattekar, Ajinkya; Manne, Sasikanth; Kuthuru, Oliva; Dougherty, Jeanette; Weiderhold, Brittany; Weisman, Ariel R.; Ittner, Caroline A. G.; Gouma, Sigrid; Dunbar, Debora; Frank, Ian; Huang, Alexander C.; Vella, Laura A.; Reilly, John P.; Hensley, Scott E.; Rauova, Lubica; Zhao, Liang; Meyer, Nuala J.; Poncz, Mortimer; Abrams, Charles S.; Wherry, E. John 分享 收藏
T CELL INTRINSIC DNA DAMAGE AND REPAIR RESPONSE AS A NOVEL MARKER ASSOCIATED WITH CLINICAL RESPONSE TO PD-1 BLOCKADE Muroyama, Yuki; Manne, Sasikanth; Greenplate, Allison; Mathew, Divij; Oldridge, Derek; Chilukuri, Lakshmi; Xu, Caiyue; Herati, Ramin; Huang, Alexander; Zamarin, Dimitriy; Friedman, Claire; Wherry, E. John 分享 收藏
SPATIAL IMMUNE PROFILING OF HUMAN GLIOBLASTOMA TISSUE REVEALS THE PRESENCE OF AGGREGATED LYMPHOID NICHES IN THE TUMOR MICROENVIRONMENT Bartkowiak, Todd; Brockman, Asa; Barone, Sierra; Hayes, Madeline; Roe, Caroline; Sinnaeve, Justine; Mistry, Akshitkumar; Leelatian, Nalin; Greenplate, Allison; Mobley, Bret; Chambless, Lola; Thompson, Reid; Weaver, Kyle; Ihrie, Rebecca; Irish, Jonathan 分享 收藏
Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation (vol 22, pg 1008, 2021) Abdel-Hakeem, Mohamed S.; Manne, Sasikanth; Beltra, Jean-Christophe; Stelekati, Erietta; Chen, Zeyu; Nzingha, Kito; Ali, Mohammed-Alkhatim; Johnson, John L.; Giles, Josephine R.; Mathew, Divij; Greenplate, Allison R.; Vahedi, Golnaz; Wherry, E. John 分享 收藏
Cellular and humoral immune responses following SARS-CoV-2 mRNA vaccination in patients with multiple sclerosis on anti-CD20 therapy Apostolidis, Sokratis A.; Kakara, Mihir; Painter, Mark M.; Goel, Rishi R.; Mathew, Divij; Lenzi, Kerry; Rezk, Ayman; Patterson, Kristina R.; Espinoza, Diego A.; Kadri, Jessy C.; Markowitz, Daniel M.; Markowitz, Clyde E.; Mexhitaj, Ina; Jacobs, Dina; Babb, Allison; Betts, Michael R.; Prak, Eline T. Luning; Weiskopf, Daniela; Grifoni, Alba; Lundgreen, Kendall A.; Gouma, Sigrid; Sette, Alessandro; Bates, Paul; Hensley, Scott E.; Greenplate, Allison R.; Wherry, E. John; Li, Rui; Bar-Or, Amit 分享 收藏
Rapid induction of antigen-specific CD4+ T cells is associated with coordinated humoral and cellular immunity to SARS-CoV-2 mRNA vaccination Painter, Mark M.; Mathew, Divij; Goel, Rishi R.; Apostolidis, Sokratis A.; Pattekar, Ajinkya; Kuthuru, Oliva; Baxter, Amy E.; Herati, Ramin S.; Oldridge, Derek A.; Gouma, Sigrid; Hicks, Philip; Dysinger, Sarah; Lundgreen, Kendall A.; Kuri-Cervantes, Leticia; Adamski, Sharon; Hicks, Amanda; Korte, Scott; Giles, Josephine R.; Weirick, Madison E.; McAllister, Christopher M.; Dougherty, Jeanette; Long, Sherea; D'Andrea, Kurt; Hamilton, Jacob T.; Betts, Michael R.; Bates, Paul; Hensley, Scott E.; Grifoni, Alba; Weiskopf, Daniela; Sette, Alessandro; Greenplate, Allison R.; Wherry, E. John 分享 收藏
Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation Abdel-Hakeem, Mohamed S.; Manne, Sasikanth; Beltra, Jean-Christophe; Stelekati, Erietta; Chen, Zeyu; Nzingha, Kito; Ali, Mohammed-Alkhatim; Johnson, John L.; Giles, Josephine R.; Mathew, Divij; Greenplate, Allison R.; Vahedi, Golnaz; Wherry, E. John 分享 收藏
CD8+ T cells contribute to survival in patients with COVID-19 and hematologic cancer CD8 T细胞有助于COVID-19和血液系统癌症患者的生存 Bange, Erin M.; Han, Nicholas A.; Wileyto, Paul; Kim, Justin Y.; Gouma, Sigrid; Robinson, James; Greenplate, Allison R.; Hwee, Madeline A.; Porterfield, Florence; Owoyemi, Olutosin; Naik, Karan; Zheng, Cathy; Galantino, Michael; Weisman, Ariel R.; Ittner, Caroline A. G.; Kugler, Emily M.; Baxter, Amy E.; Oniyide, Olutwatosin; Agyekum, Roseline S.; Dunn, Thomas G.; Jones, Tiffanie K.; Giannini, Heather M.; Weirick, Madison E.; McAllister, Christopher M.; Babady, N. Esther; Kumar, Anita; Widman, Adam J.; DeWolf, Susan; Boutemine, Sawsan R.; Roberts, Charlotte; Budzik, Krista R.; Tollett, Susan; Wright, Carla; Perloff, Tara; Sun, Lova; Mathew, Divij; Giles, Josephine R.; Oldridge, Derek A.; Wu, Jennifer E.; Alanio, Cecile; Adamski, Sharon; Garfall, Alfred L.; Vella, Laura A.; Kerr, Samuel J.; Cohen, Justine, V; Oyer, Randall A.; Massa, Ryan; Maillard, Ivan P.; Maxwell, Kara N.; Reilly, John P.; Maslak, Peter G.; Vonderheide, Robert H.; Wolchok, Jedd D.; Hensley, Scott E.; Wherry, E. John; Meyer, Nuala J.; DeMichele, Angela M.; Vardhana, Santosha A.; Mamtani, Ronac; Huang, Alexander C. 分享 收藏
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