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SARS-CoV-2 CoCoPUTs: analyzing GISAID and NCBI data to obtain codon statistics, mutations, and free energy over a multiyear period Padhiar, Nigam H.; Ghazanchyan, Tigran; Fumagalli, Sarah E.; Dicuccio, Michael; Cohen, Guy; Ginzburg, Alexander; Rikshpun, Brian; Klein, Almog; Santana-Quintero, Luis; Smith, Sean; Komar, Anton A.; Kimchi-Sarfaty, Chava 分享 收藏
Multiplex detection and identification of viral, bacterial, and protozoan pathogens in human blood and plasma using an expanded high-density resequencing microarray platform Kourout, Moussa; Espich, Scott; Fisher, Carolyn; Tiper, Irina; Purkayastha, Anjan; Smith, Sean; Santana-Quintero, Luis; Duncan, Robert 分享 收藏
Methodology for Good Machine Learning with Multi-Omics Data Coroller, Thibaud; Sahiner, Berkman; Amatya, Anup; Gossmann, Alexej; Karagiannis, Konstantinos; Moloney, Conor; Samala, Ravi K.; Santana-Quintero, Luis; Solovieff, Nadia; Wang, Craig; Amiri-Kordestani, Laleh; Cao, Qian; Cha, Kenny H.; Charlab, Rosane; Cross, Frank H.; Hu, Tingting; Huang, Ruihao; Kraft, Jeffrey; Krusche, Peter; Li, Yutong; Li, Zheng; Mazo, Ilya; Paul, Rahul; Schnakenberg, Susan; Serra, Paolo; Smith, Sean; Song, Chi; Su, Fei; Tiwari, Mohit; Vechery, Colin; Xiong, Xin; Zarate, Juan Pablo; Zhu, Hao; Chakravartty, Arunava; Liu, Qi; Ohlssen, David; Petrick, Nicholas; Schneider, Julie A.; Walderhaug, Mark; Zuber, Emmanuel 分享 收藏
Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Karagiannis, Konstantinos; Moos, Malcolm; Smith, Sean; Santana-Quintero, Luis; Xiao, Chunlin; Colgan, Michael; Hong, Huixiao; Mohiyuddin, Marghoob; Xiao, Wenming 分享 收藏
Analyzing the Role of Gut Microbiota on the Onset of Autoimmune Diseases Using TNFΔARE Murine Model Edwards, Vivienne; Smith, Dylan L.; Meylan, Francoise; Tiffany, Linda; Poncet, Sarah; Wu, Wells W.; Phue, Je-Nie; Santana-Quintero, Luis; Clouse, Kathleen A.; Gabay, Odile 分享 收藏
Exposure to TNF antagonist therapies induces variations of the gut microbiota in an in vivo model using healthy mice Gabay, Odile; Vicenty, Jonathan; Zack-Taylor, Autumn; Tiffany, Linda; Wunderlin, Grant; Smith, Dylan; Reyes-Munoz, Lismari; Edwards, Vivienne; Wu, Wells W.; Phue, je-Nie; Santana-Quintero, Luis; Phuc VinhNguyen Lam; Clouse, Kathleen A. 分享 收藏
T-cell receptor repertoire analysis by next-generation sequencing peripheral blood mononuclear cells from multiple myeloma or smoldering multiple myeloma patients Zhang, Yong; Petrovskaya, Svetlana; Scott, Emma C.; Santana-Quintero, Luis; Ghazanchyan, Tigran; Rosenburg, Amy; Rao, V. Ashutosh; Blumenthal, Gideon M.; Theoret, Marc; Pazdur, Richard; Beaver, Julia A.; Kazandjian, Dickran 分享 收藏
A genomics model to predict immune-related adverse events in cancer patients treated with checkpoint inhibitors Scott, Emma C.; Kazandjian, Dickran; Santana-Quintero, Luis; Ghazanchyan, Tigran; Petrovskaya, Svetlana; Zhang, Yong; Rosenberg, Amy; Rao, V. Ashutosh; Marte, Jennifer L.; Blumenthal, Gideon M.; Theoret, Marc R.; Pazdur, Richard; Gulley, James L.; Beaver, Julia A. 分享 收藏
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High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis Simonyan, Vahan; Chumakov, Konstantin; Dingerdissen, Hayley; Faison, William; Goldweber, Scott; Golikov, Anton; Gulzar, Naila; Karagiannis, Konstantinos; Phuc Vinh Nguyen Lam; Maudru, Thomas; Muravitskaja, Olesja; Osipova, Ekaterina; Pan, Yang; Pschenichnov, Alexey; Rostovtsev, Alexandre; Santana-Quintero, Luis; Smith, Krista; Thompson, Elaine E.; Tkachenko, Valery; Torcivia-Rodriguez, John; Voskanian, Alin; Wan, Quan; Wang, Jing; Wu, Tsung-Jung; Wilson, Carolyn; Mazumder, Raja 分享 收藏
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