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PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training Griffiths, Emma J.; Mendes, Ines; Maguire, Finlay; Guthrie, Jennifer L.; Wee, Bryan A.; Schmedes, Sarah; Holt, Kathryn; Yadav, Chanchal; Cameron, Rhiannon; Barclay, Charlotte; Dooley, Damion; Maccannell, Duncan; Chindelevitch, Leonid; Mizrachi, Ilene Karsch-; Waheed, Zahra; Katz, Lee; Petit, Robert, III; Dave, Mugdha; Oluniyi, Paul; Nasar, Muhammad Ibtisam; Raphenya, Amogelang; Hsiao, William W. L.; Timme, Ruth E. 分享 收藏
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications Timme, Ruth E.; Karsch-Mizrachi, Ilene; Waheed, Zahra; Arita, Masanori; Maccannell, Duncan; Maguire, Finlay; Petit III, Robert; Page, Andrew J.; Mendes, Catarina Ines; Nasar, Muhammad Ibtisam; Oluniyi, Paul; Tyler, Andrea D.; Raphenya, Amogelang R.; Guthrie, Jennifer L.; Olawoye, Idowu; Rinck, Gabriele; O'Cathail, Colman; Lees, John; Cochrane, Guy; Cummins, Carla; Brister, J. Rodney; Klimke, William; Feldgarden, Michael; Griffiths, Emma 分享 收藏
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification (vol 41, pg 898, 2023) 用于分类的未培养病毒基因组序列公共数据库提交指南 (第41卷，898页，2023) Adriaenssens, Evelien M. M.; Roux, Simon; Brister, J. Rodney; Karsch-Mizrachi, Ilene; Kuhn, Jens H.; Varsani, Arvind; Yigang, Tong; Reyes, Alejandro; Lood, Cedric; Lefkowitz, Elliot J.; Sullivan, Matthew B. B.; Edwards, Robert A. A.; Simmonds, Peter; Rubino, Luisa; Sabanadzovic, Sead; Krupovic, Mart; Dutilh, Bas E. E. 分享 收藏
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification 用于分类学分类的未培养病毒基因组序列公共数据库提交指南 Adriaenssens, Evelien M. M.; Roux, Simon; Brister, J. Rodney; Karsch-Mizrachi, Ilene; Kuhn, Jens H. H.; Varsani, Arvind; Yigang, Tong; Reyes, Alejandro; Lood, Cedric; Lefkowitz, Elliot J. J.; Sullivan, Matthew B. B.; Edwards, Robert A. A.; Simmonds, Peter; Rubino, Luisa; Sabanadzovic, Sead; Krupovic, Mart; Dutilh, Bas E. E. 分享 收藏
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Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank Underwood, Beverly A.; Yankie, Linda; Nawrocki, Eric P.; Palanigobu, Vasuki; Gotvyanskyy, Sergiy; Calhoun, Vincent C.; Kornbluh, Michael; Smith, Thomas G.; Fleischmann, Lydia; Sinyakov, Denis; Bollin, Colleen J.; Karsch-Mizrachi, Ilene 分享 收藏
Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation Scholz, Amber Hartman; Freitag, Jens; Lyal, Christopher H. C.; Sara, Rodrigo; Lucia Cepeda, Martha; Cancio, Ibon; Sett, Scarlett; Hufton, Andrew Lee; Abebaw, Yemisrach; Bansal, Kailash; Benbouza, Halima; Boga, Hamadi Iddi; Brisse, Sylvain; Bruford, Michael W.; Clissold, Hayley; Cochrane, Guy; Coddington, Jonathan A.; Deletoille, Anne-Caroline; Garcia-Cardona, Felipe; Hamer, Michelle; Hurtado-Ortiz, Raquel; Miano, Douglas W.; Nicholson, David; Oliveira, Guilherme; Ospina Bravo, Carlos; Rohden, Fabian; Seberg, Ole; Segelbacher, Gernot; Shouche, Yogesh; Sierra, Alejandra; Karsch-Mizrachi, Ilene; da Silva, Jessica; Hautea, Desiree M.; da Silva, Manuela; Suzuki, Mutsuaki; Tesfaye, Kassahun; Tiambo, Christian Keambou; Tolley, Krystal A.; Varshney, Rajeev; Mercedes Zambrano, Maria; Overmann, Joerg 分享 收藏
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package 面向未来并最大化元数据的效用: PHA4GE SARS-CoV-2上下文数据规范包 Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil-Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch-Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R. 分享 收藏
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NCBI Taxonomy: a comprehensive update on curation, resources and tools NCBI分类法: 关于策展、资源和工具的全面更新 Schoch, Conrad L.; Ciufo, Stacy; Domrachev, Mikhail; Hotton, Carol L.; Kannan, Sivakumar; Khovanskaya, Rogneda; Leipe, Detlef; Mcveigh, Richard; O'Neill, Kathleen; Robbertse, Barbara; Sharma, Shobha; Soussov, Vladimir; Sullivan, John P.; Sun, Lu; Turner, Sean; Karsch-Mizrachi, Ilene 分享 收藏
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Minimum Information about an Uncultivated Virus Genome (MIUViG) Roux, Simon; Adriaenssens, Evelien M.; Dutilh, Bas E.; Koonin, Eugene V.; Kropinski, Andrew M.; Krupovic, Mart; Kuhn, Jens H.; Lavigne, Rob; Brister, J. Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K.; Bordenstein, Seth R.; Bork, Peer; Breitbart, Mya; Cochrane, Guy R.; Daly, Rebecca A.; Desnues, Christelle; Duhaime, Melissa B.; Emerson, Joanne B.; Enault, Francois; Fuhrman, Jed A.; Hingamp, Pascal; Hugenholtz, Philip; Hurwitz, Bonnie L.; Ivanova, Natalia N.; Labonte, Jessica M.; Lee, Kyung-Bum; Malmstrom, Rex R.; Martinez-Garcia, Manuel; Mizrachi, Ilene Karsch; Ogata, Hiroyuki; Paez-Espino, David; Petit, Marie-Agnes; Putonti, Catherine; Rattei, Thomas; Reyes, Alejandro; Rodriguez-Valera, Francisco; Rosario, Karyna; Schriml, Lynn; Schulz, Frederik; Steward, Grieg F.; Sullivan, Matthew B.; Sunagawa, Shinichi; Suttle, Curtis A.; Temperton, Ben; Tringe, Susannah G.; Thurber, Rebecca Vega; Webster, Nicole S.; Whiteson, Katrine L.; Wilhelm, Steven W.; Wommack, K. Eric; Woyke, Tanja; Wrighton, Kelly C.; Yilmaz, Pelin; Yoshida, Takashi; Young, Mark J.; Yutin, Natalya; Allen, Lisa Zeigler; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. 分享 收藏
Minimum information about a single amplified genome (MISAG) and a metagenome- assembled genome (MIMAG) of bacteria and archaea (vol 35, pg 725, 2017) 关于细菌和古细菌的单个扩增基因组 (MISAG) 和宏基因组组装基因组 (MIMAG) 的最低信息 (第35卷，725页，2017) Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas; Harmon-Smith, Miranda; Doud, Devin; Reddy, T. B. K.; Schulz, Frederik; Jarett, Jessica; Rivers, Adam R.; Eloe-Fadrosh, Emiley A.; Tringe, Susannah G.; Ivanova, Natalia N.; Copeland, Alex; Clum, Alicia; Becraft, Eric D.; Malmstrom, Rex R.; Birren, Bruce; Podar, Mircea; Bork, Peer; Weinstock, George M.; Garrity, George M.; Dodsworth, Jeremy A.; Yooseph, Shibu; Sutton, Granger; Glockner, Frank O.; Gilbert, Jack A.; Nelson, William C.; Hallam, Steven J.; Jungbluth, Sean P.; Ettema, Thijs J. G.; Tighe, Scott; Konstantinidis, Konstantinos T.; Liu, Wen-Tso; Baker, Brett J.; Rattei, Thomas; Eisen, Jonathan A.; Hedlund, Brian; McMahon, Katherine D.; Fierer, Noah; Knight, Rob; Finn, Rob; Cochrane, Guy; Karsch-Mizrachi, Ilene; Tyson, Gene W.; Rinke, Christian; Lapidus, Alla; Meyer, Folker; Yilmaz, Pelin; Parks, Donovan H.; Eren, A. M.; Schriml, Lynn; Banfield, Jillian F.; Hugenholtz, Philip; Woyke, Tanja 分享 收藏
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