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Alpha Tom Kodamullil

department of bioinformatics

18H指数
73论文数
1.0K被引数
收录论文 29
发表时间
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Neuro-psycho MMSig: multimodal mechanism enrichment platform for neuropsychiatric disorders神经心理MMSig：神经精神障碍的多模态机制富集平台
errFrontiers in Bioinformatics
IF3.9
err2026-09-24
err0
errOAAI
errVS Vinay Srinivas Bharadhwaj; KS Karim S. Shalaby; SG Sathvik Guru Rao; BS Bruce Schultz; JZ Jiayuan Zhang; DD Daniel Domingo-Fernández; MH Martin Hofmann-Apitius; AT Alpha Tom Kodamullil
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Converging pathomechanisms link SARS-CoV-2 infection with major neurodegenerative diseasesSARS-CoV-2感染与主要神经退行性疾病之间的汇聚性致病机制
errCellular and Molecular Neurobiology
IF4.8
err2026-08-10
err0
errOAAI
errFeng Q. HeFeng; Andrea Martí-Sarrias; Heval Atas Guvenilir; Renata Baptista Vieira de Sá; Adithya Sridhar; Undine Haferkamp; Fatima El Kach-Marso; Sarah Bauermeister; Anett Hudák; Aristeidis Roubanis; Jochen Ohnmacht; Priya Sethumadhavan; Markus Ollert; Martin Hofmann-Apitius; Arcadi Navarro; Alpha Tom Kodamullil; Ole Pless; Tamas Letoha; Sandra Acosta; Rejko Krüger
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Unraveling the co-morbidity between COVID-19 and neurodegenerative diseases through multi-scale graph analysis: A systematic investigation of biological databases and text mining通过多尺度图分析揭示COVID-19与神经退行性疾病共病关系：一项对生物数据库和文本挖掘的系统研究
errArtificial Intelligence in the Life Sciences
IF5.4
err2025-12-01
err0
errOAAI
errBabaiha, Negin Sadat; Geissler, Stefan; Nibart, Vincent; Guevenilir, Heval Atas; Bharadhwaj, Vinay Srinivas; Kodamullil, Alpha Tom; Klein, Juergen; Jacobs, Marc; Hofmann-Apitius, Martin
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Chr:17q21.31 locus risk haplotype H1 susceptibility to ferroptosis is mediated by endolysosomal pathway17q21.31位点的风险单倍型H1对铁死亡易感性的介导作用是通过内体-溶酶体途径实现的。
errCell Death & Disease
IF9.6
err2025-11-13
err0
errOAAI
errEldem Sadikoglou; Daniel Domingo-Fernández; Natalia Savytska; Noemia Fernandes; Patrizia Rizzu; Anastasia Illarionova; Tabea Strauß; Sigrid C. Schwarz; Alpha Kodamullil; Günter U. Höglinger; Ashutosh Dhingra; Thomas Gasser; Peter Heutink
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Three-layered semantic framework for public health intelligence公共卫生智能的三层语义框架
errJOURNAL OF BIOMEDICAL SEMANTICS
IF0
err2025-09-15
err0
errOAAI
errGuru Rao, Sathvik; Rokkam, Pranitha; Zhang, Bide; Sargsyan, Astghik; Kaladharan, Abish; Sethumadhavan, Priya; Jacobs, Marc; Hofmann-Apitius, Martin; Tom Kodamullil, Alpha
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Alpha rhythm and Alzheimer's disease: Has Hans Berger's dream come true?Alpha节律和阿尔茨海默病: 汉斯·伯杰的梦想成真了吗？
errCLINICAL NEUROPHYSIOLOGY
IF3.6
err2025-04-01
err0
errOAAI
errBabiloni, Claudio; Arakaki, Xianghong; Baez, Sandra; Barry, Robert J.; Benussi, Alberto; Blinowska, Katarzyna; Bonanni, Laura; Borroni, Barbara; Bayard, Jorge Bosch; Bruno, Giuseppe; Cacciotti, Alessia; Carducci, Filippo; Carino, John; Carpi, Matteo; Conte, Antonella; Cruzat, Josephine; D'Antonio, Fabrizia; Della Penna, Stefania; Del Percio, Claudio; De Sanctis, Pierfilippo; Escudero, Javier; Fabbrini, Giovanni; Farina, Francesca R.; Fraga, Francisco J.; Fuhr, Peter; Gschwandtner, Ute; Guntekin, Bahar; Guo, Yi; Hajos, Mihaly; Hallett, Mark; Hampel, Harald; Hanoglu, Lutfu; Haraldsen, Ira; Hassan, Mahmoud; Hatlestad-Hall, Christoffer; Horvath, Andras Attila; Ibanez, Agustin; Infarinato, Francesco; Jaramillo-Jimenez, Alberto; Jeong, Jaeseung; Jiang, Yang; Kaminski, Maciej; Koch, Giacomo; Kumar, Sanjeev; Leodori, Giorgio; Li, Gang; Lizio, Roberta; Lopez, Susanna; Ferri, Raffaele; Maestu, Fernando; Marra, Camillo; Marzetti, Laura; McGeown, William; Miraglia, Francesca; Moguilner, Sebastian; Moretti, Davide V.; Mushtaq, Faisal; Noce, Giuseppe; Nucci, Lorenzo; Ochoa, John; Onorati, Paolo; Padovani, Alessandro; Pappalettera, Chiara; Parra, Mario Alfredo; Pardini, Matteo; Pascual-Marqui, Roberto; Paulus, Walter; Pizzella, Vittorio; Prado, Pavel; Rauchs, Geraldine; Ritter, Petra; Salvatore, Marco; Santamaria-Garcia, Hernando; Schirner, Michael; Soricelli, Andrea; Taylor, John-Paul; Tankisi, Hatice; Tecchio, Franca; Teipel, Stefan; Kodamullil, Alpha Tom; Triggiani, Antonio Ivano; Valdes-Sosa, Mitchell; Valdes-Sosa, Pedro; Vecchio, Fabrizio; Vossel, Keith; Yao, Dezhong; Yener, Gorsev; Ziemann, Ulf; Kamondi, Anita
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Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2025-02-06
err52
errOAAI
errKarki, Reagon; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin
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Design of the formalized and integrated Alzheimer's Disease Ontology and its application in retrieving textual data via text mining
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2023-12-02
err0
errOAAI
errZhang, Bide; Lage-Rupprecht, Vanessa; Wegner, Philipp; Sargsyan, Astghik; Gebel, Stephan; Jacobs, Marc; Klein, Juergen; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom
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Multi-ontology embeddings approach on human-aligned multi-ontologies representation for gene-disease associations prediction
errHELIYON
IF3.6
err2023-11-01
err0
errOAAI
errWang, Yihao; Wegner, Philipp; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom
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The Epilepsy Ontology: a community-based ontology tailored for semantic interoperability and text mining
errNEURO-ONCOLOGY ADVANCES
IF4.1
err2023-03-23
err1
errOAAI
errSargsyan, Astghik; Wegner, Philipp; Gebel, Stephan; Kaladharan, Abish; Sethumadhavan, Priya; Lage-Rupprecht, Vanessa; Darms, Johannes; Schultz, Bruce; Klein, Juergen; Jacobs, Marc; Madan, Sumit; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom
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Integrative analysis to identify shared mechanisms between schizophrenia and bipolar disorder and their comorbidities
errPROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY
IF3.9
err2023-03-01
err6
errOAAI
errBharadhwaj, Vinay Srinivas; Mubeen, Sarah; Sargsyan, Astghik; Jose, Geena Mariya; Geissler, Stefan; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom
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Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System
errJOURNAL OF CLINICAL MEDICINE
IF2.9
err2022-10-10
err3
errOAAI
errMubeen, Sarah; Domingo-Fernandez, Daniel; Diaz del Ser, Sara; Solanki, Dhwani M.; Kodamullil, Alpha T.; Hofmann-Apitius, Martin; Hopp, Marie-T; Imhof, Diana
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On the influence of several factors on pathway enrichment analysis几种因素对途径富集分析的影响
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2022-04-23
err18
errOAAI
errMubeen, Sarah; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel
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Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2021-10-27
err7
errOAAI
errKhatami, Sepehr Golriz; Mubeen, Sarah; Bharadhwaj, Vinay Srinivas; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel
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DecoPath: a web application for decoding pathway enrichment analysis
errgenomics proteomics bioinformatics
IF2.8
err2021-09-23
err3
errOAAI
errMubeen, Sarah; Bharadhwaj, Vinay S.; Gadiya, Yojana; Hofmann-Apitius, Martin; Kodamullil, Alpha T.; Domingo-Fernandez, Daniel
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Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms
errNUCLEIC ACIDS RESEARCH
IF13.1
err2021-07-01
err3
errOAAI
errFigueiredo, Rebeca Queiroz; Raschka, Tamara; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Mubeen, Sarah; Domingo-Fernandez, Daniel
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A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
errSCIENTIFIC REPORTS
IF3.9
err2021-05-26
err10
errOAAI
errSchultz, Bruce; Zaliani, Andrea; Ebeling, Christian; Reinshagen, Jeanette; Bojkova, Denisa; Lage-Rupprecht, Vanessa; Karki, Reagon; Lukassen, Soeren; Gadiya, Yojana; Ravindra, Neal G.; Das, Sayoni; Baksi, Shounak; Domingo-Fernandez, Daniel; Lentzen, Manuel; Strivens, Mark; Raschka, Tamara; Cinatl, Jindrich; DeLong, Lauren Nicole; Gribbon, Phil; Geisslinger, Gerd; Ciesek, Sandra; van Dijk, David; Gardner, Steve; Kodamullil, Alpha Tom; Froehlich, Holger; Peitsch, Manuel; Jacobs, Marc; Hoeng, Julia; Eils, Roland; Claussen, Carsten; Hofmann-Apitius, Martin
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A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer's Disease
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2021-03-23
err3
errOAAI
errKhatami, Sepehr Golriz; Domingo-Fernandez, Daniel; Mubeen, Sarah; Hoyt, Charles Tapley; Robinson, Christine; Karki, Reagon; Iyappan, Anandhi; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin
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Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer's Disease理解2型糖尿病和阿尔茨海默病共病的知识组装的数据驱动模型
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2020-10-27
err12
errOAAI
errKarki, Reagon; Madan, Sumit; Gadiya, Yojana; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin
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Identifying multimodal signatures underlying the somatic comorbidity of psychosis: the COMMITMENT roadmap
errMOLECULAR PSYCHIATRY
IF10.1
err2020-10-15
err3
errOAAI
errSchwarz, Emanuel; Alnaes, Dag; Andreassen, Ole A.; Cao, Han; Chen, Junfang; Degenhardt, Franziska; Doncevic, Daria; Dwyer, Dominic; Eils, Roland; Erdmann, Jeanette; Herrmann, Carl; Hofmann-Apitius, Martin; Kaufmann, Tobias; Koutsouleris, Nikolaos; Kodamullil, Alpha T.; Khuntia, Adyasha; Mucha, Soeren; Noethen, Markus M.; Paul, Riya; Pedersen, Mads L.; Quintero, Andres; Schunkert, Heribert; Sharma, Ashwini; Tost, Heike; Westlye, Lars T.; Zhang, Youcheng; Meyer-Lindenberg, Andreas
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研究方向

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