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M

Maria Chikina

university of pittsburgh

35H指数
166论文数
6.3K被引数
收录论文 50
发表时间
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A scalable approach to investigating sequence-to-function predictions from personal genomes一种可扩展的方法来研究个人基因组的序列到功能预测
errNature Methods
IF32.1
err2026-06-08
err0
errOAAI
errAnna E. Spiro; Xinming Tu; Yilun Sheng; Alexander Sasse; Rezwan Hosseini; Maria Chikina; Sara Mostafavi
err分享
err收藏
MoleRate: comparing molecular relative evolutionary rates to detect convergent evolution
errEVOLUTION
IF2.6
err2026-01-01
err0
PREAI
errSelberg, Avery G.; Clark, Nathan; Nekrutenko, Anton; Chikina, Maria; Kosakovsky pond, Sergei L.
err分享
err收藏
Epigenetic priming in memory B cells versus naive B cells results in differential induction genes related to T-B interactions
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errCallahan, Derrick; Smita, Shuchi; Shlomchik, Mark J.; Chikina, Maria
err分享
err收藏
Ultra-fast variant effect prediction using biophysical transcription factor binding models基于生物物理转录因子结合模型的超快变异效应预测
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-10-14
err0
PREAI
errHosseini, Rezwan; Balci, Ali Tugrul; Kostka, Dennis; Clark, Nathan; Chikina, Maria
err分享
err收藏
Best holdout assessment is sufficient for cancer transcriptomic model selection
errPATTERNS
IF7.4
err2024-12-01
err0
PREAI
errCrawford, Jake; Chikina, Maria; Greene, Casey S.
err分享
err收藏
RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2024-10-15
err0
errOAAI
errRedlich, Ruby; Kowalczyk, Amanda; Tene, Michael; Sestili, Heather H.; Foley, Kathleen; Saputra, Elysia; Clark, Nathan; Chikina, Maria; Meyer, Wynn K.; Pfenning, Andreas R.
err分享
err收藏
Unlocking gene regulation with sequence-to-function models用序列到功能模型解锁基因调控
errNATURE METHODS
IF32.1
err2024-08-09
err1
PREAI
errSasse, Alexander; Chikina, Maria; Mostafavi, Sara
err分享
err收藏
Heterogeneous pseudobulk simulation enables realistic benchmarking of cell-type deconvolution methods异构伪绿巨人模拟实现了细胞型反卷积方法的真实基准测试
errGENOME BIOLOGY
IF9.4
err2024-07-01
err2
errOAAI
errHu, Mengying; Chikina, Maria
err分享
err收藏
Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures
errCELL GENOMICS
IF9
err2024-06-01
err4
errOAAI
errNair, Venugopalan D.; Pincas, Hanna; Smith, Gregory R.; Zaslavsky, Elena; Ge, Yongchao; Amper, Mary Anne S.; Vasoya, Mital; Chikina, Maria; Sun, Yifei; Raja, Archana Natarajan; Mao, Weiguang; Gay, Nicole R.; Esser, Karyn A.; Smith, Kevin S.; Zhao, Bingqing; Wiel, Laurens; Singh, Aditya; Lindholm, Malene E.; Amar, David; Montgomery, Stephen; Snyder, Michael P.; Walsh, Martin J.; Sealfon, Stuart C.
err分享
err收藏
Evolutionary rate covariation is a reliable predictor of co-functional interactions but not necessarily physical interactions
errELIFE
IF0
err2024-02-28
err3
errOAAI
errLittle, Jordan; Chikina, Maria; Clark, Nathan L.
err分享
err收藏
Memory B cell subsets have divergent developmental origins that are coupled to distinct imprinted epigenetic states记忆b细胞亚群具有不同的发育起源，这些起源与不同的印迹表观遗传状态有关。
errNATURE IMMUNOLOGY
IF27.6
err2024-01-10
err4
PREAI
errCallahan, Derrick; Smita, Shuchi; Joachim, Stephen; Hoehn, Kenneth; Kleinstein, Steven; Weisel, Florian; Chikina, Maria; Shlomchik, Mark
err分享
err收藏
Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings用于从DNA序列预测个人基因表达的深度神经网络的基准测试突出了缺点
errNATURE GENETICS
IF31.8
err2023-11-30
err18
errOAAI
errSasse, Alexander; Ng, Bernard; Spiro, Anna E.; Tasaki, Shinya; Bennett, David A.; Gaiteri, Christopher; De Jager, Philip L.; Chikina, Maria; Mostafavi, Sara
err分享
err收藏
T cell receptor (TCR) landscape of childhood brain tumors
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errRaphael, Itay; Nisnboym, Michal; Raphael, Rebecca A.; Uttam, Shikhar; Pollack, Ian F.; Chikina, Maria; Rajasundaram, Dhivyaa; Kohanbash, Gary
err分享
err收藏
Homer1 Alternative Splicing Is Regulated by Gonadotropin-Releasing Hormone and Modulates Gonadotropin Gene Expression
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-20
err8
errOAAI
errWang, Qian; Chikina, Maria D.; Pincas, Hanna; Sealfon, Stuart C.
err分享
err收藏
Involvement of Histone Demethylase LSD1 in Short-Time-Scale Gene Expression Changes during Cell Cycle Progression in Embryonic Stem Cells
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-20
err38
errOAAI
errNair, Venugopalan D.; Ge, Yongchao; Balasubramaniyan, Natarajan; Kim, Jaeyun; Okawa, Yuya; Chikina, Maria; Troyanskaya, Olga; Sealfon, Stuart C.
err分享
err收藏
A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2023-03-15
err7
errOAAI
errMao, Weiguang; Miller, Clare M.; Nair, Venugopalan D.; Ge, Yongchao; Amper, Mary Anne S.; Cappuccio, Antonio; George, Mary-Catherine; Goforth, Carl W.; Guevara, Kristy; Marjanovic, Nada; Nudelman, German; Pincas, Hanna; Ramos, Irene; Sealfon, Rachel S. G.; Soares-Schanoski, Alessandra; Vangeti, Sindhu; Vasoya, Mital; Weir, Dawn L.; Zaslavsky, Elena; Biobank Team, Seunghee; Kim-Schulze, Seunghee; Gnjatic, Sacha; Merad, Miriam; Letizia, Andrew G.; Troyanskaya, Olga G.; Sealfon, Stuart C.; Chikina, Maria
err分享
err收藏
IL-21 R signal reprogramming cooperates with CD40 and BCR signals to select and differentiate germinal center B cells
errSCIENCE IMMUNOLOGY
IF16.3
err2023-02-03
err35
PREAI
errLuo, Wei; Conter, Laura; Elsner, Rebecca A.; Smita, Shuchi; Weisel, Florian; Callahan, Derrick; Wu, Shuxian; Chikina, Maria; Shlomchik, Mark
err分享
err收藏
Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature
errCELL SYSTEMS
IF7.7
err2022-12-01
err3
errOAAI
errCappuccio, Antonio; Chawla, Daniel G.; Chen, Xi; Rubenstein, Aliza B.; Cheng, Wan Sze; Mao, Weiguang; Burke, Thomas W.; Tsalik, Ephraim L.; Petzold, Elizabeth; Henao, Ricardo; McClain, Micah T.; Woods, Christopher W.; Chikina, Maria; Troyanskaya, Olga G.; Sealfon, Stuart C.; Kleinstein, Steven H.; Zaslavsky, Elena
err分享
err收藏
Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness
errELIFE
IF0
err2022-11-07
err20
errOAAI
errKowalczyk, Amanda; Chikina, Maria; Clark, Nathan
err分享
err收藏
Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection感染前抗病毒先天免疫导致SARS-CoV-2感染的性别差异
errCELL SYSTEMS
IF7.7
err2022-11-01
err8
errOAAI
errSauerwald, Natalie; Zhang, Zijun; Ramos, Irene; Nair, Venugopalan D.; Soares-Schanoski, Alessandra; Ge, Yongchao; Mao, Weiguang; Alshammary, Hala; Gonzalez-Reiche, Ana S.; van de Guchte, Adriana; Goforth, Carl W.; Lizewski, Rhonda A.; Lizewski, Stephen E.; Amper, Mary Anne S.; Vasoya, Mital; Seenarine, Nitish; Guevara, Kristy; Marjanovic, Nada; Miller, Clare M.; Nudelman, German; Schilling, Megan A.; Sealfon, Rachel S. G.; Termini, Michael S.; Vangeti, Sindhu; Weir, Dawn L.; Zaslavsky, Elena; Chikina, Maria; Wu, Ying Nian; Bakel, Harm Van; Letizia, Andrew G.; Sealfon, Stuart C.; Troyanskaya, Olga G.
err分享
err收藏

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