未登录 Insects shape the cadaver decomposition microbiome and postmortem interval estimation accuracy 昆虫塑造尸体分解微生物组并影响死后间隔时间估计的准确性 Nieciecki, Victoria; Seitz, Valerie A.; Burcham, Zachary M.; Otto, Kristen; Cantrell, Kalen; Kirkland, Jonathan; Ackermann, Gail; Knight, Rob; Lynne, Aaron; Metcalf, Jessica L.; Bucheli, Sibyl 分享 收藏
Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes 使用异丙醇和基质管从低生物量和高生物量样品中简化的核酸和代谢物提取 Brennan, Caitriona; Shaffer, Justin P.; Belda-Ferre, Pedro; Mohanty, Ipsita; Weng, Yuhan; Cantrell, Kalen; Ackermann, Gail; Allaband, Celeste; Bryant, Mackenzie; Farmer, Sawyer; Gonzalez, Antonio; Mcdonald, Daniel; Martino, Cameron; Meehan, Michael J.; Rahman, Gibraan; Salido, Rodolfo A.; Schwartz, Tara; Song, Se Jin; Tribelhorn, Caitlin; Tubb, Helena M.; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments CaDAVEr：一个跨越脊椎动物环境的微生物分解者宏基因组组装基因组目录 Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L. 分享 收藏
Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences COVID-19缓解措施对大学校园宿舍中SARS-CoV-2传播的谱系地理学和遗传网络评估 Wertheim, Joel O.; Vasylyeva, Tetyana I.; Wood, Robert J.; Cantrell, Kalen; Contreras, Soraya Pina; Feldheim, Aryeh; Goyal, Ravi; Havens, Jennifer L.; Knight, Rob; Laurent, Louise C.; Moshiri, Niema; Neuhard, Robert; Sathe, Shashank; Satterlund, Alysson; Scioscia, Angela; Song, Angela Y.; SEARCH Alliance, S. E. A. R. C. H. Alliance; Schooley, Robert T.; Anderson, Cheryl M.; Martin, Natasha K. 分享 收藏
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies 清理板块: 在大规模微生物组研究中减轻井对井污染的战略方法 Brennan, Caitriona; Belda-Ferre, Pedro; Zuffa, Simone; Charron-Lamoureux, Vincent; Mohanty, Ipsita; Ackermann, Gail; Allaband, Celeste; Ambre, Madison; Boyer, Tara; Bryant, MacKenzie; Cantrell, Kalen; Gonzalez, Antonio; McDonald, Daniel; Salido, Rodolfo A.; Song, Se Jin; Wright, Gillian; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting Keehner, Jocelyn; Abeles, Shira R.; Longhurst, Christopher A.; Horton, Lucy E.; Myers, Frank E.; Riggs-Rodriguez, Lindsay; Ahmad, Mohammed; Baxter, Sally; Boussina, Aaron; Cantrell, Kalen; Cardenas, Priscilla; De Hoff, Peter; El-Kareh, Robert; Holland, Jennifer; Ikeda, Daryn; Kurashige, Kirk; Laurent, Louise C.; Lucas, Andrew; Pride, David; Sathe, Shashank; Tran, Allen R.; Vasylyeva, Tetyana I.; Yeo, Gene; Knight, Rob; Wertheim, Joel O.; Torriani, Francesca J. 分享 收藏
Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses 样品储存条件和拭子顺序的变化对16s阴道微生物组分析的影响 Kumar, Tanya; Bryant, MacKenzie; Cantrell, Kalen; Song, Se Jin; McDonald, Daniel; Tubb, Helena M.; Farmer, Sawyer; Lewis, Amanda; Lukacz, Emily S.; Brubaker, Linda; Knight, Rob 分享 收藏
Greengenes2 unifies microbial data in a single reference tree (Jul, 10.1038/s41587-023-01845-1, 2023) Greengenes2将微生物数据统一在一个参考树中 (7月，10.1038/s41587-023-01845-1，2023) McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T.; Nicolaou, Giorgia; Parks, Donovan H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob 分享 收藏
Greengenes2 unifies microbial data in a single reference tree Greengenes2将微生物数据统一在一个参考树中 McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T. T.; Nicolaou, Giorgia; Parks, Donovan H. H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S. S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob 分享 收藏
Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses Kumar, Tanya; Bryant, MacKenzie; Cantrell, Kalen; Song, Se Jin; McDonald, Daniel; Tubb, Helena M. M.; Farmer, Sawyer; Lukacz, Emily S. S.; Brubaker, Linda; Knight, Rob 分享 收藏
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype 成分意识的系统发育 β 多样性措施可以更好地解决与表型相关的微生物组 Martino, Cameron; McDonald, Daniel; Cantrell, Kalen; Dilmore, Amanda Hazel; Vazquez-Baeza, Yoshiki; Shenhav, Liat; Shaffer, Justin P.; Rahman, Gibraan; Armstrong, George; Allaband, Celeste; Song, Se Jin; Knight, Rob 分享 收藏
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes Armstrong, George; Cantrell, Kalen; Huang, Shi; McDonald, Daniel; Haiminen, Niina; Carrieri, Anna Paola; Zhu, Qiyun; Gonzalez, Antonio; McGrath, Imran; Beck, Kristen L.; Hakim, Daniel; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Jain, Mohit; Inouye, Michael; Swafford, Austin D.; Kim, Ho-Cheol; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Knight, Rob 分享 收藏
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment Marotz, Clarisse; Belda-Ferre, Pedro; Ali, Farhana; Das, Promi; Huang, Shi; Cantrell, Kalen; Jiang, Lingjing; Martino, Cameron; Diner, Rachel E.; Rahman, Gibraan; McDonald, Daniel; Armstrong, George; Kodera, Sho; Donato, Sonya; Ecklu-Mensah, Gertrude; Gottel, Neil; Salas Garcia, Mariana C.; Chiang, Leslie Y.; Salido, Rodolfo A.; Shaffer, Justin P.; Bryant, Mac Kenzie; Sanders, Karenina; Humphrey, Greg; Ackermann, Gail; Haiminen, Niina; Beck, Kristen L.; Kim, Ho-Cheol; Carrieri, Anna Paola; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Torriani, Francesca J.; Knight, Rob; Gilbert, Jack; Sweeney, Daniel A.; Allard, Sarah M. 分享 收藏
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets EMPress可以对多组学数据集进行树引导，交互式和探索性分析 Cantrell, Kalen; Fedarko, Marcus W.; Rahman, Gibraan; McDonald, Daniel; Yang, Yimeng; Zaw, Thant; Gonzalez, Antonio; Janssen, Stefan; Estaki, Mehrbod; Haiminen, Niina; Beck, Kristen L.; Zhu, Qiyun; Sayyari, Erfan; Morton, James T.; Armstrong, George; Tripathi, Anupriya; Gauglitz, Julia M.; Marotz, Clarisse; Matteson, Nathaniel L.; Martino, Cameron; Sanders, Jon G.; Carrieri, Anna Paola; Song, Se Jin; Swafford, Austin D.; Dorrestein, Pieter C.; Andersen, Kristian G.; Parida, Laxmi; Kim, Ho-Cheol; Vazquez-Baeza, Yoshiki; Knight, Rob 分享 收藏
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Zhu, Qiyun; Mai, Uyen; Pfeiffer, Wayne; Janssen, Stefan; Asnicar, Francesco; Sanders, Jon G.; Belda-Ferre, Pedro; Al-Ghalith, Gabriel A.; Kopylova, Evguenia; McDonald, Daniel; Kosciolek, Tomasz; Yin, John B.; Huang, Shi; Salam, Nimaichand; Jiao, Jian-Yu; Wu, Zijun; Xu, Zhenjiang Z.; Cantrell, Kalen; Yang, Yimeng; Sayyari, Erfan; Rabiee, Maryam; Morton, James T.; Podell, Sheila; Knights, Dan; Li, Wen-Jun; Huttenhower, Curtis; Segata, Nicola; Smarr, Larry; Mirarab, Siavash; Knight, Rob 分享 收藏
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