Utz H. Ermel - Publications, H-index & Citations

Utz H. Ermel

biohub

8H指数

60论文数

816被引数

收录论文 15

发表时间

Lessons learned from a Kaggle challenge for particle picking in cryo-electron tomography 从冷冻电子断层扫描粒子拾取的Kaggle挑战中学到的经验

Nature Methods

IF32.1

2026-08-14

OAAI

Ariana Peck; Joshua Hutchings; Jonathan Schwartz; Yue Yu; Utz H. Ermel; Saugat Kandel; Dari Kimanius; Zhuowen Zhao; Shawn Zheng; Brendan Artley; David List; Sergio A. Silva; Walter Reade; Jeremy Asuncion; Kira Evans; Jessica Gadling; Kandarp Khandwala; Suzette McCanny; Dannielle G. McCarthy; Jun Xi Ni; Janeece Pourroy; Manasa Venkatakrishnan; Zun Shi Wang; David A. Agard; Clinton S. Potter; Bridget Carragher; Kyle I. S. Harrington; Mohammadreza Paraan

Embrella: Integrated Data Tracking and Workflow Orchestration for Cryo-Electron Tomography Embrella：用于冷冻电子断层扫描的集成数据跟踪和工作流编排

Microscopy and Microanalysis

IF3

2026-07-27

OAAI

Yue Yu; David Dong; Michael Souza; Pallavi Khedle; Utz Ermel; Yongbaek Cho; Shawn Zheng; Ariana Peck; Jonathan Schwartz; Saurabh Gupta; Phoenix Logan; Jerry Fu; Bryan Chu; Ashley Anderson; Dave Rogers; Bridget Carragher; David Agard; Anchi Cheng

Context-Aware Annotation in Cryo-Electron Tomography 在冷冻电子断层扫描中的上下文感知注释

Microscopy and Microanalysis

IF3

2026-07-27

OAAI

Jonathan Schwartz; Daniel Ji; Josh Hutchings; Utz Ermel; Rahel Woldeyes; Yue Yu; Hannah Siems; Daniel Serwas; Mohammadreza Paraan; David A Agard; Bridget Carragher; Dari Kimanius

AreTomoLive: automated reconstruction of comprehensively corrected and denoised cryo-electron tomograms in real time and at high throughput AreTomoLive：实时、高通量自动化重建全面校正和去噪的冷冻电子断层扫描图

Nature Methods

IF32.1

2026-05-25

OAAI

Ariana Peck; Yue Yu; Mohammadreza Paraan; Dari Kimanius; Utz H. Ermel; Joshua Hutchings; Jonathan Schwartz; Daniel Serwas; Hannah Siems; Norbert S. Hill; Mallak Ali; Julia Peukes; Garrett A. Greenan; Shu-Hsien Sheu; Elizabeth A. Montabana; Bridget Carragher; Clinton S. Potter; David A. Agard; Shawn Zheng

Evaluating the Volta phase plate for improved tomogram alignment in cryo-electron tomography 评估伏打相位板对冷冻电子断层扫描中断层图像对齐的改进

IUCrJ

IF3.6

2026-05-01

PREAI

Hutchings, Joshua; Ji, Daniel; Zheng, Shawn; Montabana, Elizabeth A.; Ermel, Utz H.; Peck, Ariana; Schwartz, Jonathan; Woldeyes, Rahel; Paraan, Mohammadreza; Ali, Mallak; Hill, Norbert S.; Siems, Hannah; Serwas, Daniel; Cheng, Anchi; Kimanius, Dari; Agard, David A.; Potter, Clinton S.; Carragher, Bridget; Yu, Yue

copick: An open dataset interface and toolkit for collaborative annotation and analysis of cryo-electron tomography data Copick：用于冷冻电子断层扫描数据协同注释与分析的开放数据集接口和工具包

Protein Science

IF5.2

2026-04-17

OAAI

Utz Heinrich Ermel; Jonathan Schwartz; Zhuowen Zhao; Daniel Ji; Ariana Peck; Yue Yu; Mohammadreza Paraan; Bridget Carragher; Achilleas S. Frangakis; Kyle I. S. Harrington

The kidney slit diaphragm resembles a fishnet 肾脏裂孔隔膜类似于鱼网。

Kidney International

IF12.6

2025-09-24

OAAI

Alexandra N. Birtasu; Konstantin Wieland; Utz H. Ermel; Serena M. Arghittu; Sina Manger; Maciej K. Kocylowski; Bernd Fakler; Margot P. Scheffer; Roberto Covino; Florian Grahammer; Achilleas S. Frangakis

Cryo-EM structure of a cell-free synthesized full-length human β1-adrenergic receptor in complex with Gs 人源全长β1-肾上腺素能受体在细胞自由合成条件下的Cryo-EM结构，与Gs蛋白复合物

Structure

IF4.3

2025-08-25

OAAI

Felipe Merino; Zoe Köck; Utz Ermel; Philipp Dahlhaus; Anna Grimm; Anja Seybert; Jan Kubicek; Achilleas S. Frangakis; Volker Dötsch; Daniel Hilger; Frank Bernhard

The CZ CryoET Data Portal: Enabling Collaborative Analysis of Standardized CryoET Data using Machine Learning Methods

Microscopy and Microanalysis

IF3

2025-07-25

OAAI

Utz H Ermel; Anchi Cheng; Jun Xi Ni; Jessica Gadling; Manasa Venkatakrishnan; Kira Evans; Janeece Pourroy; Jeremy Asuncion; Kandarp Khandwala; Zun Shi Wang; Andrew Sweet; Benjamin Nelson; Dannielle McCarthy; Ronen Kalo; Trent Smith; Bryan Chu; Eric M Wang; Richa Agarwal; Bridget Carragher

ArtiaX: geometric models, camera paths and image processing tools ArtiaX：几何模型、相机路径和图像处理工具

Journal of Structural Biology

IF5.1

2025-05-28

OAAI

Pauline Roth; Utz H. Ermel; Deborah Moser; Gunnar Arctaedius; Maren Wehrheim; Margot P. Scheffer; Achilleas S. Frangakis

Nanosecond Hyperquenching for Electron Cryo-Microscopy Without Air-Water Interface Artifacts

CHEMISTRY-A EUROPEAN JOURNAL

IF3.7

2025-03-01

PREAI

Ermel, Utz H.; Schwalbe, Harald; Cherepanov, Alexey V.

Localization of albumin with correlative super resolution light- and electron microscopy in the kidney

JOURNAL OF STRUCTURAL BIOLOGY-X

IF5.1

2024-12-01

OAAI

Birtasu, Alexandra N.; Ermel, Utz H.; V. Rahm, Johanna; Seybert, Anja; Flottmann, Benjamin; Heilemann, Mike; Grahammer, Florian; Frangakis, Achilleas S.

A data portal for providing standardized annotations for cryo-electron tomography

NATURE METHODS

IF32.1

2024-10-21

PREAI

Ermel, Utz; Cheng, Anchi; Ni, Jun Xi; Gadling, Jessica; Venkatakrishnan, Manasa; Evans, Kira; Asuncion, Jeremy; Sweet, Andrew; Pourroy, Janeece; Wang, Zun Shi; Khandwala, Kandarp; Nelson, Benjamin; Mccarthy, Dannielle; Wang, Eric M.; Agarwal, Richa; Carragher, Bridget

Ex vivo visualization of RNA polymerase III-specific gene activity with electron microscopy

COMMUNICATIONS BIOLOGY

IF5.1

2021-02-19

OAAI

Manger, Sina; Ermel, Utz H.; Frangakis, Achilleas S.

Desmosome architecture derived from molecular dynamics simulations and cryo-electron tomography 从分子动力学模拟和冷冻电子层析成像衍生的桥粒结构

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-10-16

OAAI

Sikora, Mateusz; Ermel, Utz H.; Seybold, Anna; Kunz, Michael; Calloni, Giulia; Reitz, Julian; Vabulas, R. Martin; Hummer, Gerhard; Frangakis, Achilleas S.

研究方向