未登录Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
Gong, Binsheng; Li, Dan; Zhang, Yifan; Kusko, Rebecca; Lababidi, Samir; Cao, Zehui; Chen, Mingyang; Chen, Ning; Chen, Qiaochu; Chen, Qingwang; Dai, Jiacheng; Gan, Qiang; Gao, Yuechen; Guo, Mingkun; Hariani, Gunjan; He, Yujie; Hou, Wanwan; Jiang, He; Kushwaha, Garima; Li, Jian-Liang; Li, Jianying; Li, Yulan; Liu, Liang-Chun; Liu, Ruimei; Liu, Shiming; Meriaux, Edwin; Mo, Mengqing; Moore, Mathew; Moss, Tyler J.; Niu, Quanne; Patel, Ananddeep; Ren, Luyao; Saremi, Nedda F.; Shang, Erfei; Shang, Jun; Song, Ping; Sun, Siqi; Urban, Brent J.; Wang, Danke; Wang, Shangzi; Wen, Zhining; Xiong, Xiangyi; Yang, Jingcheng; Yin, Lihui; Zhang, Chao; Zhang, Ruolan; Bhandari, Ambica; Cai, Wanshi; Eterovic, Agda Karina; Megherbi, Dalila B.; Shi, Tieliu; Suo, Chen; Yu, Ying; Zheng, Yuanting; Novoradovskaya, Natalia; Sears, Renee L.; Shi, Leming; Jones, Wendell; Tong, Weida; Xu, Joshua .png)
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收藏The SEQC2 epigenomics quality control (EpiQC) study (vol 22, 332, 2021)Foox, Jonathan; Nordlund, Jessica; Lalancette, Claudia; Gong, Ting; Lacey, Michelle; Lent, Samantha; Langhorst, Bradley W.; Ponnaluri, V. K. Chaithanya; Williams, Louise; Padmanabhan, Karthik Ramaswamy; Cavalcante, Raymond; Lundmark, Anders; Butler, Daniel; Mozsary, Christopher; Gurvitch, Justin; Greally, John M.; Suzuki, Masako; Menor, Mark; Nasu, Masaki; Alonso, Alicia; Sheridan, Caroline; Scherer, Andreas; Bruinsma, Stephen; Golda, Gosia; Muszynska, Agata; Labaj, Pawel P.; Campbell, Matthew A.; Wos, Frank; Raine, Amanda; Liljedahl, Ulrika; Axelsson, Tomas; Wang, Charles; Chen, Zhong; Yang, Zhaowei; Li, Jing; Yang, Xiaopeng; Wang, Hongwei; Melnick, Ari; Guo, Shang; Blume, Alexander; Franke, Vedran; de Caceres, Inmaculada Ibanez; Rodriguez-Antolin, Carlos; Rosas, Rocio; Davis, Justin Wade; Ishii, Jennifer; Megherbi, Dalila B.; Xiao, Wenming; Liao, Will; Xu, Joshua; Hong, Huixiao; Ning, Baitang; Tong, Weida; Akalin, Altuna; Wang, Yunliang; Deng, Youping; Mason, Christopher E. 分享 收藏 The SEQC2 epigenomics quality control (EpiQC) studyFoox, Jonathan; Nordlund, Jessica; Lalancette, Claudia; Gong, Ting; Lacey, Michelle; Lent, Samantha; Langhorst, Bradley W.; Ponnaluri, V. K. Chaithanya; Williams, Louise; Padmanabhan, Karthik Ramaswamy; Cavalcante, Raymond; Lundmark, Anders; Butler, Daniel; Mozsary, Christopher; Gurvitch, Justin; Greally, John M.; Suzuki, Masako; Menor, Mark; Nasu, Masaki; Alonso, Alicia; Sheridan, Caroline; Scherer, Andreas; Bruinsma, Stephen; Golda, Gosia; Muszynska, Agata; Labaj, Pawel P.; Campbell, Matthew A.; Wos, Frank; Raine, Amanda; Liljedahl, Ulrika; Axelsson, Tomas; Wang, Charles; Chen, Zhong; Yang, Zhaowei; Li, Jing; Yang, Xiaopeng; Wang, Hongwei; Melnick, Ari; Guo, Shang; Blume, Alexander; Franke, Vedran; Ibanez de Caceres, Inmaculada; Rodriguez-Antolin, Carlos; Rosas, Rocio; Davis, Justin Wade; Ishii, Jennifer; Megherbi, Dalila B.; Xiao, Wenming; Liao, Will; Xu, Joshua; Hong, Huixiao; Ning, Baitang; Tong, Weida; Akalin, Altuna; Wang, Yunliang; Deng, Youping; Mason, Christopher E. 分享 收藏 Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncologyDeveson, Ira W.; Gong, Binsheng; Lai, Kevin; LoCoco, Jennifer S.; Richmond, Todd A.; Schageman, Jeoffrey; Zhang, Zhihong; Novoradovskaya, Natalia; Willey, James C.; Jones, Wendell; Kusko, Rebecca; Chen, Guangchun; Madala, Bindu Swapna; Blackburn, James; Stevanovski, Igor; Bhandari, Ambica; Close, Devin; Conroy, Jeffrey; Hubank, Michael; Marella, Narasimha; Mieczkowski, Piotr A.; Qiu, Fujun; Sebra, Robert; Stetson, Daniel; Sun, Lihyun; Szankasi, Philippe; Tan, Haowen; Tang, Lin-ya; Arib, Hanane; Best, Hunter; Burgher, Blake; Bushel, Pierre R.; Casey, Fergal; Cawley, Simon; Chang, Chia-Jung; Choi, Jonathan; Dinis, Jorge; Duncan, Daniel; Eterovic, Agda Karina; Feng, Liang; Ghosal, Abhisek; Giorda, Kristina; Glenn, Sean; Happe, Scott; Haseley, Nathan; Horvath, Kyle; Hung, Li-Yuan; Jarosz, Mirna; Kushwaha, Garima; Li, Dan; Li, Quan-Zhen; Li, Zhiguang; Liu, Liang-Chun; Liu, Zhichao; Ma, Charles; Mason, Christopher E.; Megherbi, Dalila B.; Morrison, Tom; Pabon-Pena, Carlos; Pirooznia, Mehdi; Proszek, Paula Z.; Raymond, Amelia; Rindler, Paul; Ringler, Rebecca; Scherer, Andreas; Shaknovich, Rita; Shi, Tieliu; Smith, Melissa; Song, Ping; Strahl, Maya; Thodima, Venkat J.; Tom, Nikola; Verma, Suman; Wang, Jiashi; Wu, Leihong; Xiao, Wenzhong; Xu, Chang; Yang, Mary; Zhang, Guangliang; Zhang, Sa; Zhang, Yilin; Shi, Leming; Tong, Weida; Johann, Donald J., Jr.; Mercer, Timothy R.; Xu, Joshua 分享 收藏 分享 收藏 分享 收藏 分享 收藏 The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundanceWang, Charles; Gong, Binsheng; Bushel, Pierre R.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Xu, Joshua; Fang, Hong; Hong, Huixiao; Shen, Jie; Su, Zhenqiang; Meehan, Joe; Li, Xiaojin; Yang, Lu; Li, Haiqing; Labaj, Pawel P.; Kreil, David P.; Megherbi, Dalila; Gaj, Stan; Caiment, Florian; van Delft, Joost; Kleinjans, Jos; Scherer, Andreas; Devanarayan, Viswanath; Wang, Jian; Yang, Yong; Qian, Hui-Rong; Lancashire, Lee J.; Bessarabova, Marina; Nikolsky, Yuri; Furlanello, Cesare; Chierici, Marco; Albanese, Davide; Jurman, Giuseppe; Riccadonna, Samantha; Filosi, Michele; Visintainer, Roberto; Zhang, Ke K.; Li, Jainying; Hsieh, Jui-Hua; Svoboda, Daniel L.; Fuscoe, James C.; Deng, Youping; Shi, Leming; Paules, Richard S.; Auerbach, Scott S.; Tong, Weida 分享 收藏 A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium测序质量控制联盟对rna-seq准确性，可重复性和信息含量的全面评估Su, Zhenqiang; Labaj, Pawel P.; Li, Sheng; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Shi, Wei; Wang, Charles; Schroth, Gary P.; Setterquist, Robert A.; Thompson, John F.; Jones, Wendell D.; Xiao, Wenzhong; Xu, Weihong; Jensen, Roderick V.; Kelly, Reagan; Xu, Joshua; Conesa, Ana; Furlanello, Cesare; Gao, Hanlin; Hong, Huixiao; Jafari, Nadereh; Letovsky, Stan; Liao, Yang; Lu, Fei; Oakeley, Edward J.; Peng, Zhiyu; Praul, Craig A.; Santoyo-Lopez, Javier; Scherer, Andreas; Shi, Tieliu; Smyth, Gordon K.; Staedtler, Frank; Sykacek, Peter; Tan, Xin-Xing; Thompson, E. Aubrey; Vandesompele, Jo; Wang, May D.; Wang, Jian; Wolfinger, Russell D.; Zavadil, Jiri; Auerbach, Scott S.; Bao, Wenjun; Binder, Hans; Blomquist, Thomas; Brilliant, Murray H.; Bushel, Pierre R.; Cain, Weimin; Catalano, Jennifer G.; Chang, Ching-Wei; Chen, Tao; Chen, Geng; Chen, Rong; Chierici, Marco; Chu, Tzu-Ming; Clevert, Djork-Arne; Deng, Youping; Derti, Adnan; Devanarayan, Viswanath; Dong, Zirui; Dopazo, Joaquin; Du, Tingting; Fang, Hong; Fang, Yongxiang; Fasold, Mario; Fernandez, Anita; Fischer, Matthias; Furio-Tari, Pedro; Fuscoe, James C.; Caiment, Florian; Gaj, Stan; Gandara, Jorge; Gao, Huan; Ge, Weigong; Gondo, Yoichi; Gong, Binsheng; Gong, Meihua; Gong, Zhuolin; Green, Bridgett; Guo, Chao; Guo, Lei; Guo, Li-Wu; Hadfield, James; Hellemans, Jan; Hochreiter, Sepp; Jia, Meiwen; Jian, Min; Johnson, Charles D.; Kay, Suzanne; Kleinjans, Jos; Lababidi, Samir; Levy, Shawn; Li, Quan-Zhen; Li, Li; Li, Li; Li, Peng; Li, Yan; Li, Haiqing; Li, Jianying; Li, Shiyong; Lin, Simon M.; Lopez, Francisco J.; Lu, Xin; Luo, Heng; Ma, Xiwen; Meehan, Joseph; Megherbi, Dalila B.; Mei, Nan; Mu, Bing; Ning, Baitang; Pandey, Akhilesh; Perez-Florido, Javier; Perkins, Roger G.; Peters, Ryan; Phan, John H.; Pirooznia, Mehdi; Qian, Feng; Qing, Tao; Rainbow, Lucille; Rocca-Serra, Philippe; Sambourg, Laure; Sansone, Susanna-Assunta; Schwartz, Scott; Shah, Ruchir; Shen, Jie; Smith, Todd M.; Stegle, Oliver; Stralis-Pavese, Nancy; Stupka, Elia; Suzuki, Yutaka; Szkotnicki, Lee T.; Tinning, Matthew; Tu, Bimeng; van Deft, Joost; Vela-Boza, Alicia; Venturini, Elisa; Walker, Stephen J.; Wan, Liqing; Wang, Wei; Wang, Jinhui; Wang, Jun; Wieben, Eric D.; Willey, James C.; Wu, Po-Yen; Xuan, Jiekun; Yang, Yong; Ye, Zhan; Yin, Ye; Yu, Ying; Yuan, Yate-Ching; Zhang, John; Zhang, Ke K.; Zhang, Wenqian; Zhang, Wenwei; Zhang, Yanyan; Zhao, Chen; Zheng, Yuanting; Zhou, Yiming; Zumbo, Paul; Tong, Weida; Kreil, David P.; Mason, Christopher E.; Shi, Leming 分享 收藏 分享 收藏 The MicroArray Quality Control (MAQC)-IIII study of common practices for the development and validation of microarray-based predictive models微阵列质量控制 (MAQC)-IIII基于微阵列的预测模型的开发和验证的通用实践研究Shi, Leming; Campbell, Gregory; Jones, Wendell D.; Campagne, Fabien; Wen, Zhining; Walker, Stephen J.; Su, Zhenqiang; Chu, Tzu-Ming; Goodsaid, Federico M.; Pusztai, Lajos; Shaughnessy, John D., Jr.; Oberthuer, Andre; Thomas, Russell S.; Paules, Richard S.; Fielden, Mark; Barlogie, Bart; Chen, Weijie; Du, Pan; Fischer, Matthias; Furlanello, Cesare; Gallas, Brandon D.; Ge, Xijin; Megherbi, Dalila B.; Symmans, W. Fraser; Wang, May D.; Zhang, John; Bitter, Hans; Brors, Benedikt; Bushel, Pierre R.; Bylesjo, Max; Chen, Minjun; Cheng, Jie; Cheng, Jing; Chou, Jeff; Davison, Timothy S.; Delorenzi, Mauro; Deng, Youping; Devanarayan, Viswanath; Dix, David J.; Dopazo, Joaquin; Dorff, Kevin C.; Elloumi, Fathi; Fan, Jianqing; Fan, Shicai; Fan, Xiaohui; Fang, Hong; Gonzaludo, Nina; Hess, Kenneth R.; Hong, Huixiao; Huan, Jun; Irizarry, Rafael A.; Judson, Richard; Juraeva, Dilafruz; Lababidi, Samir; Lambert, Christophe G.; Li, Li; Li, Yanen; Li, Zhen; Lin, Simon M.; Liu, Guozhen; Lobenhofer, Edward K.; Luo, Jun; Luo, Wen; McCall, Matthew N.; Nikolsky, Yuri; Pennello, Gene A.; Perkins, Roger G.; Philip, Reena; Popovici, Vlad; Price, Nathan D.; Qian, Feng; Scherer, Andreas; Shi, Tieliu; Shi, Weiwei; Sung, Jaeyun; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Thodima, Venkata; Trygg, Johan; Vishnuvajjala, Lakshmi; Wang, Sue Jane; Wu, Jianping; Wu, Yichao; Xie, Qian; Yousef, Waleed A.; Zhang, Liang; Zhang, Xuegong; Zhong, Sheng; Zhou, Yiming; Zhu, Sheng; Arasappan, Dhivya; Bao, Wenjun; Lucas, Anne Bergstrom; Berthold, Frank; Brennan, Richard J.; Buness, Andreas; Catalano, Jennifer G.; Chang, Chang; Chen, Rong; Cheng, Yiyu; Cui, Jian; Czika, Wendy; Demichelis, Francesca; Deng, Xutao; Dosymbekov, Damir; Eils, Roland; Feng, Yang; Fostel, Jennifer; Fulmer-Smentek, Stephanie; Fuscoe, James C.; Gatto, Laurent; Ge, Weigong; Goldstein, Darlene R.; Guo, Li; Halbert, Donald N.; Han, Jing; Harris, Stephen C.; Hatzis, Christos; Herman, Damir; Huang, Jianping; Jensen, Roderick V.; Jiang, Rui; Johnson, Charles D.; Jurman, Giuseppe; Kahlert, Yvonne; Khuder, Sadik A.; Kohl, Matthias; Li, Jianying; Li, Li; Li, Menglong; Li, Quan-Zhen; Li, Shao; Li, Zhiguang; Liu, Jie; Liu, Ying; Liu, Zhichao; Meng, Lu; Madera, Manuel; Martinez-Murillo, Francisco; Medina, Ignacio; Meehan, Joseph; Miclaus, Kelci; Moffitt, Richard A.; Montaner, David; Mukherjee, Piali; Mulligan, George J.; Neville, Padraic; Nikolskaya, Tatiana; Ning, Baitang; Page, Grier P.; Parker, Joel; Parry, R. Mitchell; Peng, Xuejun; Peterson, Ron L.; Phan, John H.; Quanz, Brian; Ren, Yi; Riccadonna, Samantha; Roter, Alan H.; Samuelson, Frank W.; Schumacher, Martin M.; Shambaugh, Joseph D.; Shi, Qiang; Shippy, Richard; Si, Shengzhu; Smalter, Aaron; Sotiriou, Christos; Soukup, Mat; Staedtler, Frank; Steiner, Guido; Stokes, Todd H.; Sun, Qinglan; Tan, Pei-Yi; Tang, Rong; Tezak, Zivana; Thorn, Brett; Tsyganova, Marina; Turpaz, Yaron; Vega, Silvia C.; Visintainer, Roberto; von Frese, Juergen; Wang, Charles; Wang, Eric; Wang, Junwei; Wang, Wei; Westermann, Frank; Willey, James C.; Woods, Matthew; Wu, Shujian; Xiao, Nianqing; Xu, Joshua; Xu, Lei; Yang, Lun; Zeng, Xiao; Zhang, Jialu; Zhang, Li; Zhang, Min; Zhao, Chen; Puri, Raj K.; Scherf, Uwe; Tong, Weida; Wolfinger, Russell D. 分享 收藏 分享 收藏 
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