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The PanOryza pangene catalog of Asian cultivated rice Contreras-Moreira, Bruno; Sharma, Eshan; Saraf, Shradha; Naamati, Guy; Gupta, Parul; Elser, Justin; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Wei, Sharon; Olson, Andrew; Tsang, Ian; Lodha, Disha; Zhou, Yong; Yu, Zhichao; Zhao, Wen; Zhang, Jianwei; Amberkar, Sandeep; Sue-Ob, Kawinnat; Sun, Zhi; Martin, Maria; McNally, Kenneth L.; Ware, Doreen; Deutsch, Eric W.; Copetti, Dario; Wing, Rod A.; Jaiswal, Pankaj; Dyer, Sarah; Jones, Andrew R. 分享 收藏
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research Gramene 2025：扩展的比较基因组学和通路资源，集成的搜索功能以及用于作物研究的泛基因组门户 Olson, Andrew; Kumari, Sunita; Wei, Xuehong; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela karey; Kumar, Vivek; Van buren, Peter; Olson, Audra; Kim, Catherine; Braynen, Janeen; Zhang, Lifang; Dyer, Sarah; Alvarez-Jarreta, Jorge; Saraf, Shradha; Contreras-Moreira, Bruno; Naamati, Guy; Ernst, Christina; Papatheodorou, Irene; George, Nancy; Jaiswal, Pankaj; Naithani, Sushma; Gupta, Parul; Elser, Justin; D'eustachio, Peter; Assmann, Sarah M.; Ferrero-Serrano, Angel; Pasha, Asher; Provart, Nicholas; Gladman, Nicholas; Ware, Doreen 分享 收藏
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GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data Wei, Sharon; Chougule, Kapeel; Olson, Andrew; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Kumar, Vivek; Kumari, Sunita; Zhang, Lifang; Olson, Audra; Kim, Catherine; Gladman, Nick; Ware, Doreen 分享 收藏
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A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes 涵盖高粱基因98% 的大型测序突变文库-有价值的反向遗传资源 Jiao, Yinping; Nigam, Deepti; Barry, Kerrie; Daum, Chris; Yoshinaga, Yuko; Lipzen, Anna; Khan, Adil; Parasa, Sai-Praneeth; Wei, Sharon; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Dhiman, Pallavi; Burow, Gloria; Hayes, Chad; Chen, Junping; Brandizzi, Federica; Mortimer, Jenny; Ware, Doreen; Xin, Zhanguo 分享 收藏
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Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice Zhou, Yong; Yu, Zhichao; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Rivera, Luis F.; Kathiresan, Nagarajan; Al-Bader, Noor; Mohammed, Nahed; Alsantely, Aseel; Mussurova, Saule; Santos, Joao; Thimma, Manjula; Troukhan, Maxim; Fornasiero, Alice; Green, Carl D.; Copetti, Dario; Kudrna, David; Llaca, Victor; Lorieux, Mathias; Zuccolo, Andrea; Ware, Doreen; McNally, Kenneth; Zhang, Jianwei; Wing, Rod A. 分享 收藏
Ten new high-quality genome assemblies for diverse bioenergy sorghum genotypes 用于不同生物能源高粱基因型的十个新的高质量基因组组装 Voelker, William G.; Krishnan, Krittika; Chougule, Kapeel; Alexander, Louie C.; Lu, Zhenyuan; Olson, Andrew; Ware, Doreen; Songsomboon, Kittikun; Ponce, Cristian; Brenton, Zachary W.; Boatwright, J. Lucas; Cooper, Elizabeth A. 分享 收藏
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SorghumBase: a web-based portal for sorghum genetic information and community advancement Gladman, Nicholas; Olson, Andrew; Wei, Sharon; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela; Meijs, Ivar; Van Buren, Peter; Jiao, Yinping; Wang, Bo; Kumar, Vivek; Kumari, Sunita; Zhang, Lifang; Burke, John; Chen, Junping; Burow, Gloria; Hayes, Chad; Emendack, Yves; Xin, Zhanguo; Ware, Doreen 分享 收藏
A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum Kumari, Sunita; Kumar, Vivek; Beilsmith, Kathleen; Seaver, Samuel M. D.; Canon, Shane; Dehal, Paramvir; Gu, Tian; Joachimiak, Marcin; Lerma-Ortiz, Claudia; Liu, Filipe; Lu, Zhenyuan; Pearson, Eric; Ranjan, Priya; Riel, William; Henry, Christopher S.; Arkin, Adam P.; Ware, Doreen 分享 收藏
Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud Wang, Liya; Lu, Zhenyuan; delaBastide, Melissa; Van Buren, Peter; Wang, Xiaofei; Ghiban, Cornel; Regulski, Michael; Drenkow, Jorg; Xu, Xiaosa; Ortiz-Ramirez, Carlos; Marco, Cristina F.; Goodwin, Sara; Dobin, Alexander; Birnbaum, Kenneth D.; Jackson, David P.; Martienssen, Robert A.; McCombie, William R.; Micklos, David A.; Schatz, Michael C.; Ware, Doreen H.; Gingeras, Thomas R. 分享 收藏
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing Wang, Bo; Tseng, Elizabeth; Regulski, Michael; Clark, Tyson A.; Hon, Ting; Jiao, Yinping; Lu, Zhenyuan; Olson, Andrew; Stein, Joshua C.; Ware, Doreen 分享 收藏
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Gramene 2013: comparative plant genomics resources Monaco, Marcela K.; Stein, Joshua; Naithani, Sushma; Wei, Sharon; Dharmawardhana, Palitha; Kumari, Sunita; Amarasinghe, Vindhya; Youens-Clark, Ken; Thomason, James; Preece, Justin; Pasternak, Shiran; Olson, Andrew; Jiao, Yinping; Lu, Zhenyuan; Bolser, Dan; Kerhornou, Arnaud; Staines, Dan; Walts, Brandon; Wu, Guanming; D'Eustachio, Peter; Haw, Robin; Croft, David; Kersey, Paul J.; Stein, Lincoln; Jaiswal, Pankaj; Ware, Doreen 分享 收藏
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA Regulski, Michael; Lu, Zhenyuan; Kendall, Jude; Donoghue, Mark T. A.; Reinders, Jon; Llaca, Victor; Deschamps, Stephane; Smith, Andrew; Levy, Dan; McCombie, W. Richard; Tingey, Scott; Rafalski, Antoni; Hicks, James; Ware, Doreen; Martienssen, Robert A. 分享 收藏
The iPlant collaborative: cyberinfrastructure for plant biology iPlant协作: 植物生物学的网络基础设施 Goff, Stephen A.; Vaughn, Matthew; McKay, Sheldon; Lyons, Eric; Stapleton, Ann E.; Gessler, Damian; Matasci, Naim; Wang, Liya; Hanlon, Matthew; Lenards, Andrew; Muir, Andy; Merchant, Nirav; Lowry, Sonya; Mock, Stephen; Helmke, Matthew; Kubach, Adam; Narro, Martha; Hopkins, Nicole; Micklos, David; Hilgert, Uwe; Gonzales, Michael; Jordan, Chris; Skidmore, Edwin; Dooley, Rion; Cazes, John; McLay, Robert; Lu, Zhenyuan; Pasternak, Shiran; Koesterke, Lars; Piel, William H.; Grene, Ruth; Noutsos, Christos; Gendler, Karla; Feng, Xin; Tang, Chunlao; Lent, Monica; Kim, Seung-Jin; Kvilekval, Kristian; Manjunath, B. S.; Tannen, Val; Stamatakis, Alexandros; Sanderson, Michael; Welch, Stephen M.; Cranston, Karen A.; Soltis, Pamela; Soltis, Doug; O'Meara, Brian; Ane, Cecile; Brutnell, Tom; Kleibenstein, Daniel J.; White, Jeffery W.; Leebens-Mack, James; Donoghue, Michael J.; Spalding, Edgar P.; Vision, Todd J.; Myers, Christopher R.; Lowenthal, David; Enquist, Brian J.; Boyle, Brad; Akoglu, Ali; Andrews, Greg; Ram, Sudha; Ware, Doreen; Stein, Lincoln; Stanzione, Dan 分享 收藏
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