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BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration BV-BRC：一个整合了细菌和病毒生物信息学资源的统一平台，具有扩展功能与人工智能集成 Shukla, Maulik; Wattam, Alice R.; Aleman, Antonio; Bhattacharya, Roshni; Bowers, Nicole; Brettin, Thomas; Capria, Anna; Chia, Nicholas; Cucinell, Clark; Davis, James j; Dempsey, Donald M.; Dickerman, Allan; Dietrich, Emily M.; Gokdemir, Ozan; Hendrickson, R. curtis; Kenyon, Ronald W.; Klahn, Brian; Kuscuoglu, Mehmet; Lefkowitz, Elliot J.; Ma, Heng; Machi, Dustin; Macken, Catherine; Mann, Carla m; Mao, Chunhong; Nguyen, Marcus; Olsen, Gary J.; Olson, Robert D.; Overbeek, Ross; Owens, Sarah M.; Parrello, Bruce; Poretsky, Rachel; Pusch, Gordon D.; Ramanathan, Arvind; Sheriff, Jamal tyrone; Singh, Indresh; Stewart, Lucy; Vanoeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Wilke, Andreas; Zmasek, Christian m; Zuniga, Abril; Stevens, Rick L. 分享 收藏
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics Zvyagin, Maxim; Brace, Alexander; Hippe, Kyle; Deng, Yuntian; Zhang, Bin; Bohorquez, Cindy Orozco; Clyde, Austin; Kale, Bharat; Perez-Rivera, Danilo; Ma, Heng; Mann, Carla M.; Irvin, Michael; Ozgulbas, Defne G.; Vassilieva, Natalia; Pauloski, James Gregory; Ward, Logan; Hayot-Sasson, Valerie; Emani, Murali; Foreman, Sam; Xie, Zhen; Lin, Diangen; Shukla, Maulik; Nie, Weili; Romero, Josh; Dallago, Christian; Vahdat, Arash; Xiao, Chaowei; Gibbs, Thomas; Foster, Ian; Davis, James J.; Papka, Michael E.; Brettin, Thomas; Stevens, Rick; Anandkumar, Anima; Vishwanath, Venkatram; Ramanathan, Arvind 分享 收藏
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SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies Aytan-Aktug, Derya; Grigorjev, Vladislav; Szarvas, Judit; Clausen, Philip T. L. C.; Munk, Patrick; Nguyen, Marcus; Davis, James J.; Aarestrup, Frank M.; Lund, Ole 分享 收藏
SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York City 纽约市野生白尾鹿的SARS-CoV-2 Omicron (B.1.1.529) 感染 Vandegrift, Kurt J.; Yon, Michele; Surendran Nair, Meera; Gontu, Abhinay; Ramasamy, Santhamani; Amirthalingam, Saranya; Neerukonda, Sabarinath; Nissly, Ruth H.; Chothe, Shubhada K.; Jakka, Padmaja; LaBella, Lindsey; Levine, Nicole; Rodriguez, Sophie; Chen, Chen; Sheersh Boorla, Veda; Stuber, Tod; Boulanger, Jason R.; Kotschwar, Nathan; Aucoin, Sarah Grimke; Simon, Richard; Toal, Katrina L.; Olsen, Randall J.; Davis, James J.; Bold, Dashzeveg; Gaudreault, Natasha N.; Dinali Perera, Krishani; Kim, Yunjeong; Chang, Kyeong-Ok; Maranas, Costas D.; Richt, Juergen A.; Musser, James M.; Hudson, Peter J.; Kapur, Vivek; Kuchipudi, Suresh V. 分享 收藏
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR 介绍细菌和病毒生物信息学资源中心 (bv-brc): 结合PATRIC，IRD和ViPR的资源 Olson, Robert D.; Assaf, Rida; Brettin, Thomas; Conrad, Neal; Cucinell, Clark; Davis, James J.; Dempsey, Donald M.; Dickerman, Allan; Dietrich, Emily M.; Kenyon, Ronald W.; Kuscuoglu, Mehmet; Lefkowitz, Elliot J.; Lu, Jian; Machi, Dustin; Macken, Catherine; Mao, Chunhong; Niewiadomska, Anna; Nguyen, Marcus; Olsen, Gary J.; Overbeek, Jamie C.; Parrello, Bruce; Parrello, Victoria; Porter, Jacob S.; Pusch, Gordon D.; Shukla, Maulik; Singh, Indresh; Stewart, Lucy; Tan, Gene; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Wallace, Zachary S.; Warren, Andrew S.; Wattam, Alice R.; Xia, Fangfang; Yoo, Hyunseung; Zhang, Yun; Zmasek, Christian M.; Scheuermann, Richard H.; Stevens, Rick L. 分享 收藏
Transmission history of SARS-CoV-2 in humans and white-tailed deer Willgert, Katriina; Didelot, Xavier; Surendran-Nair, Meera; Kuchipudi, Suresh, V; Ruden, Rachel M.; Yon, Michele; Nissly, Ruth H.; Vandegrift, Kurt J.; Nelli, Rahul K.; Li, Lingling; Jayarao, Bhushan M.; Levine, Nicole; Olsen, Randall J.; Davis, James J.; Musser, James M.; Hudson, Peter J.; Kapur, Vivek; Conlan, Andrew J. K. 分享 收藏
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Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer Kuchipudi, Suresh V.; Surendran-Nair, Meera; Ruden, Rachel M.; Yon, Michele; Nissly, Ruth H.; Vandegrift, Kurt J.; Nelli, Rahul K.; Li, Lingling; Jayarao, Bhushan M.; Maranas, Costas D.; Levine, Nicole; Willgert, Katriina; Conlan, Andrew J. K.; Olsen, Randall J.; Davis, James J.; Musser, James M.; Hudson, Peter J.; Kapur, Vivek 分享 收藏
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A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates (vol 11, e01527-20, 2020) Pincus, Nathan B.; Ozer, Egon A.; Allen, Jonathan P.; Nguyen, Marcus; Davis, James J.; Winter, Deborah R.; Chuang, Chih-Hsien; Chiu, Cheng-Hsun; Zamorano, Laura; Oliver, Antonio; Hauser, Alan R. 分享 收藏
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area Long, S. Wesley; Olsen, Randall J.; Christensen, Paul A.; Bernard, David W.; Davis, James J.; Shukla, Maulik; Nguyen, Marcus; Saavedra, Matthew Ojeda; Yerramilli, Prasanti; Pruitt, Layne; Subedi, Sishir; Kuo, Hung-Che; Hendrickson, Heather; Eskandari, Ghazaleh; Nguyen, Hoang A. T.; Long, J. Hunter; Kumaraswami, Muthiah; Goike, Jule; Boutz, Daniel; Gollihar, Jimmy; McLellan, Jason S.; Chou, Chia-Wei; Javanmardi, Kamyab; Finkelstein, Ilya J.; Musser, James M. 分享 收藏
Carbapenems drive the collateral resistance to ceftaroline in cystic fibrosis patients with MRSA Varela, Maria Celeste; Roch, Melanie; Taglialegna, Agustina; Long, Scott W.; Saavedra, Matthew Ojeda; Rose, Warren E.; Davis, James J.; Hoffman, Lucas R.; Hernandez, Rafael E.; Rosato, Roberto R.; Rosato, Adriana E. 分享 收藏
A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates 基于基因组的铜绿假单胞菌毒力预测模型 Pincus, Nathan B.; Ozer, Egon A.; Allen, Jonathan P.; Nguyen, Marcus; Davis, James J.; Winter, Deborah R.; Chuang, Chih-Hsien; Chiu, Cheng-Hsun; Zamorano, Laura; Oliver, Antonio; Hauser, Alan R. 分享 收藏
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities Davis, James J.; Wattam, Alice R.; Aziz, Ramy K.; Brettin, Thomas; Butler, Ralph; Butler, Rory M.; Chlenski, Philippe; Conrad, Neal; Dickerman, Allan; Dietrich, Emily M.; Gabbard, Joseph L.; Gerdes, Svetlana; Guard, Andrew; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Dan; Nguyen, Marcus; Nordberg, Eric K.; Olsen, Gary J.; Olson, Robert D.; Overbeek, Jamie C.; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Xia, Fangfang; Xie, Dawen; Yoo, Hyunseung; Stevens, Rick 分享 收藏
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KBase: The United States Department of Energy Systems Biology Knowledgebase Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.; Harris, Nomi L.; Stevens, Rick L.; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W.; Henderson, Matthew L.; Riehl, William J.; Murphy-Olson, Dan; Chan, Stephen Y.; Kamimura, Roy T.; Kumari, Sunita; Drake, Meghan M.; Brettin, Thomas S.; Glass, Elizabeth M.; Chivian, Dylan; Gunter, Dan; Weston, David J.; Allen, Benjamin H.; Baumohl, Jason; Best, Aaron A.; Bowen, Ben; Brenner, Steven E.; Bun, Christopher C.; Chandonia, John-Marc; Chia, Jer-Ming; Colasanti, Ric; Conrad, Neal; Davis, James J.; Davison, Brian H.; DeJongh, Matthew; Devoid, Scott; Dietrich, Emily; Dubchak, Inna; Edirisinghe, Janaka N.; Fang, Gang; Faria, Jose P.; Frybarger, Paul M.; Gerlach, Wolfgang; Gerstein, Mark; Greiner, Annette; Gurtowski, James; Haun, Holly L.; He, Fei; Jain, Rashmi; Joachimiak, Marcin P.; Keegan, Kevin P.; Kondo, Shinnosuke; Kumar, Vivek; Land, Miriam L.; Meyer, Folker; Mills, Marissa; Novichkov, Pavel S.; Oh, Taeyun; Olsen, Gary J.; Olson, Robert; Parrello, Bruce; Pasternak, Shiran; Pearson, Erik; Poon, Sarah S.; Price, Gavin A.; Ramakrishnan, Srividya; Ranjan, Priya; Ronald, Pamela C.; Schatz, Michael C.; Seaver, Samuel M. D.; Shukla, Maulik; Sutormin, Roman A.; Syed, Mustafa H.; Thomason, James; Tintle, Nathan L.; Wang, Daifeng; Xia, Fangfang; Yoo, Hyunseung; Yoo, Shinjae; Yu, Dantong 分享 收藏
Developing an &ITin silico&IT minimum inhibitory concentration panel test for &ITKlebsiella pneumoniae &IT Nguyen, Marcus; Brettin, Thomas; Long, S. Wesley; Musser, James M.; Olsen, Randall J.; Olson, Robert; Shukla, Maulik; Stevens, Rick L.; Xia, Fangfang; Yoo, Hyunseung; Davis, James J. 分享 收藏
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