Philipp Bücher - Publications, H-index & Citations

Philipp Bücher

swiss institute of bioinformatics

54H指数

150论文数

1.3W被引数

收录论文 53

发表时间

Extensive binding of poorly characterized human transcription factors to genomic dark matter 广泛结合的人类转录因子与基因组暗物质

Nature Communications

IF15.7

2026-08-05

OAAI

Rozita Razavi; Ali Fathi; Isaac Yellan; Alexander Brechalov; Kaitlin U. Laverty; Arttu Jolma; Aldo Hernandez-Corchado; Hong Zheng; Ally W. H. Yang; Mihai Albu; Marjan Barazandeh; Chun Hu; Ilya E. Vorontsov; Zain M. Patel; Ivan V. Kulakovskiy; Philipp Bucher; Quaid Morris; Hamed S. Najafabadi; Timothy R. Hughes

An expanded codebook of human transcription factor DNA-binding specificity 人类转录因子DNA结合特异性的扩展编码本

Nature

IF48.5

2026-08-05

OAAI

Arttu Jolma; Kaitlin U. Laverty; Ali Fathi; Ally W. H. Yang; Isaac Yellan; Ilya E. Vorontsov; Antoni J. Gralak; Judith F. Kribelbauer-Swietek; Sachi Inukai; Rozita Razavi; Mihai Albu; Alexander Brechalov; Zain M. Patel; Vladimir Nozdrin; Georgy Meshcheryakov; Andrey Buyan; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Quaid Morris; Matthew T. Weirauch; Oriol Fornes; Vsevolod J. Makeev; Jan Grau; Ivo Grosse; Philipp Bucher; Bart Deplancke; Ivan V. Kulakovskiy; Timothy R. Hughes

Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors 跨平台基序发现与基准测试，以探索研究较少的人类转录因子的结合特异性

Communications Biology

IF5.1

2025-11-07

OAAI

Ilya E. Vorontsov; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Arttu Jolma; Mihai Albu; Giovanna Ambrosini; Katerina Faltejskova; Antoni J. Gralak; Nikita Gryzunov; Sachi Inukai; Semyon Kolmykov; Pavel Kravchenko; Judith F. Kribelbauer-Swietek; Kaitlin U. Laverty; Vladimir Nozdrin; Zain M. Patel; Dmitry Penzar; Marie-Luise Plescher; Sara E. Pour; Rozita Razavi; Ally W. H. Yang; Ivan Yevshin; Arsenii Zinkevich; Matthew T. Weirauch; Philipp Bucher; Bart Deplancke; Oriol Fornes; Jan Grau; Ivo Grosse; Fedor A. Kolpakov; Vsevolod J. Makeev; Timothy R. Hughes; Ivan V. Kulakovskiy

RNA Profiling and Chromatin Immunoprecipitation-Sequencing Reveal that PTF1a Stabilizes Pancreas Progenitor Identity via the Control of MNX1/HLXB9 and a Network of Other Transcription Factors

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-20

OAAI

Thompson, Nancy; Gesina, Emilie; Scheinert, Peter; Bucher, Philipp; Grapin-Botton, Anne

Contraceptive progestins with androgenic properties stimulate breast epithelial cell proliferation

EMBO MOLECULAR MEDICINE

IF8.3

2021-05-27

OAAI

Shamseddin, Marie; De Martino, Fabio; Constantin, Celine; Scabia, Valentina; Lancelot, Anne-Sophie; Laszlo, Csaba; Ayyannan, Ayyakkannu; Battista, Laura; Raffoul, Wassim; Gailloud-Matthieu, Marie-Christine; Bucher, Philipp; Fiche, Maryse; Ambrosini, Giovanna; Sflomos, George; Brisken, Cathrin

Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study 从全面的全对全转录因子结合基序基准研究中获得的见解

GENOME BIOLOGY

IF9.4

2020-05-11

OAAI

Ambrosini, Giovanna; Vorontsov, Ilya; Penzar, Dmitry; Groux, Romain; Fornes, Oriol; Nikolaeva, Daria D.; Ballester, Benoit; Grau, Jan; Grosse, Ivo; Makeev, Vsevolod; Kulakovskiy, Ivan; Bucher, Philipp

The secreted protease Adamts18 links hormone action to activation of the mammary stem cell niche

NATURE COMMUNICATIONS

IF15.7

2020-03-26

OAAI

Ataca, Dalya; Aouad, Patrick; Constantin, Celine; Laszlo, Csaba; Beleut, Manfred; Shamseddin, Marie; Rajaram, Renuga Devi; Jeitziner, Rachel; Mead, Timothy J.; Caikovski, Marian; Bucher, Philipp; Ambrosini, Giovanna; Apte, Suneel S.; Brisken, Cathrin

Common genetic variants associated with Parkinson's disease display widespread signature of epigenetic plasticity

SCIENTIFIC REPORTS

IF3.9

2019-12-05

OAAI

Sharma, Amit; Osato, Naoki; Liu, Hongde; Asthana, Shailendra; Dakal, Tikam Chand; Ambrosini, Giovanna; Bucher, Philipp; Schmitt, Ina; Wuellner, Ullrich

EPD in 2020: enhanced data visualization and extension to ncRNA promoters

NUCLEIC ACIDS RESEARCH

IF13.1

2019-11-04

OAAI

Meylan, Patrick; Dreos, Rene; Ambrosini, Giovanna; Groux, Romain; Bucher, Philipp

Opposing chromatin remodelers control transcription initiation frequency and start site selection

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2019-08-05

OAAI

Kubik, Slawomir; Bruzzone, Maria Jessica; Challal, Drice; Dreos, Rene; Mattarocci, Stefano; Bucher, Philipp; Libri, Domenico; Shore, David

MGA repository: a curated data resource for ChIP-seq and other genome annotated data

NUCLEIC ACIDS RESEARCH

IF13.1

2017-10-24

OAAI

Dreos, Rene; Ambrosini, Giovanna; Groux, Romain; Perier, Rouayda Cavin; Bucher, Philipp

SMiLE-seq identifies binding motifs of single and dimeric transcription factors

NATURE METHODS

IF32.1

2017-01-16

PREAI

Isakova, Alina; Groux, Romain; Imbeault, Michael; Rainer, Pernille; Alpern, Daniel; Dainese, Riccardo; Ambrosini, Giovanna; Trono, Didier; Bucher, Philipp; Deplancke, Bart

The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

199

OAAI

Dreos, Rene; Ambrosini, Giovanna; Groux, Romain; Perier, Rouaida Cavin; Bucher, Philipp

SNP2TFBS-a database of regulatory SNPs affecting predicted transcription factor binding site affinity

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

148

OAAI

Kumar, Sunil; Ambrosini, Giovanna; Bucher, Philipp

The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data

BMC GENOMICS

IF3.7

2016-11-18

OAAI

Ambrosini, Giovanna; Dreos, Rene; Kumar, Sunil; Bucher, Philipp

A maximum-likelihood approach for building cell-type trees by lifting

BMC GENOMICS

IF3.7

2016-01-11

OAAI

Nair, Nishanth Ulhas; Hunter, Laura; Shao, Mingfu; Grnarova, Paulina; Lin, Yu; Bucher, Philipp; Moret, Bernard M. E.

The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools 真核启动子数据库: EPDnew和新启动子分析工具的扩展

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-06

248

OAAI

Dreos, Ren; Ambrosini, Giovanna; Perier, Rouayda Cavin; Bucher, Philipp

Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers

GENOMICS

IF3

2014-08-01

OAAI

Polychronopoulos, Dimitris; Weitschek, Emanuel; Dimitrieva, Slavica; Bucher, Philipp; Felici, Giovanni; Almirantis, Yannis

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

NUCLEIC ACIDS RESEARCH

IF13.1

2014-05-03

OAAI

Stockinger, Heinz; Altenhoff, Adrian M.; Arnold, Konstantin; Bairoch, Amos; Bastian, Frederic; Bergmann, Sven; Bougueleret, Lydie; Bucher, Philipp; Delorenzi, Mauro; Lane, Lydie; Le Mercier, Philippe; Lisacek, Frederique; Michielin, Olivier; Palagi, Patricia M.; Rougemont, Jacques; Schwede, Torsten; von Mering, Christian; van Nimwegen, Erik; Walther, Daniel; Xenarios, Ioannis; Zavolan, Mihaela; Zdobnov, Evgeny M.; Zoete, Vincent; Appel, Ron D.

Nuclear Factor I genomic binding associates with chromatin boundaries

BMC GENOMICS

IF3.7

2013-01-01

OAAI

Pjanic, Milos; Schmid, Christoph D.; Gaussin, Armelle; Ambrosini, Giovanna; Adamcik, Jozef; Pjanic, Petar; Plasari, Genta; Kerschgens, Jan; Dietler, Giovani; Bucher, Philipp; Mermod, Nicolas

研究方向