Markus Krummenacker - Publications, H-index & Citations

Markus Krummenacker

sri international

31H指数

58论文数

1.7W被引数

收录论文 32

发表时间

The Genome Explorer genome browser

MSYSTEMS

IF4.6

2024-07-23

OAAI

Herson, James; Krummenacker, Markus; Spaulding, Aaron; O'Maille, Paul; Karp, Peter D.

The New BioCyc Genome Browser Provides Real-Time Zooming to the Sequence Level 新的BioCyc基因组浏览器提供实时缩放到序列水平

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2024-03-01

OAAI

Karp, Peter; Herson, James; Krummenacker, Markus; Spaulding, Aaron; O'Maille, Paul

Cross-evaluation of E. coli 's operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons

CELL SYSTEMS

IF7.7

2024-03-01

PREAI

Sun, Gwanggyu; Defelice, Mialy M.; Gillies, Taryn E.; Ahn-Horst, Travis A.; Andrews, Cecelia J.; Krummenacker, Markus; Karp, Peter D.; Morrison, Jerry H.; Covert, Markus W.

SynRoute: A Retrosynthetic Planning Software

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2023-08-28

OAAI

Latendresse, Mario; Malerich, Jeremiah P.; Herson, James; Krummenacker, Markus; Szeto, Judy; Vu, Vi-Anh; Collins, Nathan; Madrid, Peter B.

The EcoCyc Database in 2021

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-07-28

157

OAAI

Keseler, Ingrid M.; Gama-Castro, Socorro; Mackie, Amanda; Billington, Richard; Bonavides-Martinez, Cesar; Caspi, Ron; Kothari, Anamika; Krummenacker, Markus; Midford, Peter E.; Muniz-Rascado, Luis; Ong, Wai Kit; Paley, Suzanne; Santos-Zavaleta, Alberto; Subhraveti, Pallavi; Tierrafria, Victor H.; Wolfe, Alan J.; Collado-Vides, Julio; Paulsen, Ian T.; Karp, Peter D.

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-03-08

OAAI

Paley, Suzanne; Keseler, Ingrid M.; Krummenacker, Markus; Karp, Peter D.

Pathway Tools Visualization of Organism-Scale Metabolic Networks

METABOLITES

IF3.7

2021-01-22

OAAI

Paley, Suzanne; Billington, Richard; Herson, James; Krummenacker, Markus; Karp, Peter D.

Fully Automated Chemical Synthesis: Toward the Universal Synthesizer 全自动化学合成: 走向通用合成器

ORGANIC PROCESS RESEARCH & DEVELOPMENT

IF3.5

2020-06-23

PREAI

Collins, Nathan; Stout, David; Lim, Jin-Ping; Malerich, Jeremiah P.; White, Jason D.; Madrid, Peter B.; Latendresse, Mario; Krieger, David; Szeto, Judy; Vi-Anh Vu; Rucker, Kristina; Deleo, Michael; Gorfu, Yonael; Krummenacker, Markus; Hokama, Leslie A.; Karp, Peter; Mallya, Sahana

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology Pathway Tools 23.0版更新: 通路/基因组信息学和系统生物学软件

BRIEFINGS IN BIOINFORMATICS

IF7.7

2019-12-08

107

OAAI

Karp, Peter D.; Midford, Peter E.; Billington, Richard; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Ong, Wai Kit; Subhraveti, Pallavi; Caspi, Ron; Fulcher, Carol; Keseler, Ingrid M.; Paley, Suzanne M.

The MetaCyc database of metabolic pathways and enzymes - a 2019 update 代谢途径和酶的MetaCyc数据库-2019更新

NUCLEIC ACIDS RESEARCH

IF13.1

2019-10-05

659

OAAI

Caspi, Ron; Billington, Richard; Keseler, Ingrid M.; Kothari, Anamika; Krummenacker, Markus; Midford, Peter E.; Ong, Wai Kit; Paley, Suzanne; Subhraveti, Pallavi; Karp, Peter D.

Metabolic route computation in organism communities

MICROBIOME

IF12.7

2019-06-07

OAAI

Krummenacker, Markus; Latendresse, Mario; Karp, Peter D.

A Comparison of Microbial Genome Web Portals

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-02-22

OAAI

Karp, Peter D.; Ivanova, Natalia; Krummenacker, Markus; Kyrpides, Nikos; Latendresse, Mario; Midford, Peter; Ong, Wai Kit; Paley, Suzanne; Seshadri, Rekha

The MetaCyc database of metabolic pathways and enzymes 代谢途径和酶的MetaCyc数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2017-10-20

626

OAAI

Caspi, Ron; Billington, Richard; Fulcher, Carol A.; Keseler, Ingrid M.; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Midford, Peter E.; Ong, Quang; Ong, Wai Kit; Paley, Suzanne; Subhraveti, Pallavi; Karp, Peter D.

The BioCyc collection of microbial genomes and metabolic pathways 微生物基因组和代谢途径的生物循环收集

BRIEFINGS IN BIOINFORMATICS

IF7.7

2017-08-17

550

OAAI

Karp, Peter D.; Billington, Richard; Caspi, Ron; Fulcher, Carol A.; Latendresse, Mario; Kothari, Anamika; Keseler, Ingrid M.; Krummenacker, Markus; Midford, Peter E.; Ong, Quang; Ong, Wai Kit; Paley, Suzanne M.; Subhraveti, Pallavi

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

466

OAAI

Keseler, Ingrid M.; Mackie, Amanda; Santos-Zavaleta, Alberto; Billington, Richard; Bonavides-Martinez, Cesar; Caspi, Ron; Fulcher, Carol; Gama-Castro, Socorro; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Muniz-Rascado, Luis; Ong, Quang; Paley, Suzanne; Peralta-Gil, Martin; Subhraveti, Pallavi; Velazquez-Ramirez, David A.; Weaver, Daniel; Collado-Vides, Julio; Paulsen, Ian; Karp, Peter D.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

NUCLEIC ACIDS RESEARCH

IF13.1

2015-11-02

881

OAAI

Caspi, Ron; Billington, Richard; Ferrer, Luciana; Foerster, Hartmut; Fulcher, Carol A.; Keseler, Ingrid M.; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Mueller, Lukas A.; Ong, Quang; Paley, Suzanne; Subhraveti, Pallavi; Weaver, Daniel S.; Karp, Peter D.

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology Pathway Tools 19.0版更新: 通路/基因组信息学和系统生物学软件

BRIEFINGS IN BIOINFORMATICS

IF7.7

2015-10-10

193

OAAI

Karp, Peter D.; Latendresse, Mario; Paley, Suzanne M.; Krummenacker, Markus; Ong, Quang D.; Billington, Richard; Kothari, Anamika; Weaver, Daniel; Lee, Thomas; Subhraveti, Pallavi; Spaulding, Aaron; Fulcher, Carol; Keseler, Ingrid M.; Caspi, Ron

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases 代谢途径和酶的MetaCyc数据库以及途径/基因组数据库的BioCyc集合

NUCLEIC ACIDS RESEARCH

IF13.1

2013-11-12

625

OAAI

Caspi, Ron; Altman, Tomer; Billington, Richard; Dreher, Kate; Foerster, Hartmut; Fulcher, Carol A.; Holland, Timothy A.; Keseler, Ingrid M.; Kothari, Anamika; Kubo, Aya; Krummenacker, Markus; Latendresse, Mario; Mueller, Lukas A.; Ong, Quang; Paley, Suzanne; Subhraveti, Pallavi; Weaver, Daniel S.; Weerasinghe, Deepika; Zhang, Peifen; Karp, Peter D.

EcoCyc: fusing model organism databases with systems biology

NUCLEIC ACIDS RESEARCH

IF13.1

2012-11-07

544

OAAI

Keseler, Ingrid M.; Mackie, Amanda; Peralta-Gil, Martin; Santos-Zavaleta, Alberto; Gama-Castro, Socorro; Bonavides-Martinez, Cesar; Fulcher, Carol; Huerta, Araceli M.; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Muniz-Rascado, Luis; Ong, Quang; Paley, Suzanne; Schroeder, Imke; Shearer, Alexander G.; Subhraveti, Pallavi; Travers, Mike; Weerasinghe, Deepika; Weiss, Verena; Collado-Vides, Julio; Gunsalus, Robert P.; Paulsen, Ian; Karp, Peter D.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

NUCLEIC ACIDS RESEARCH

IF13.1

2011-11-18

528

OAAI

Caspi, Ron; Altman, Tomer; Dreher, Kate; Fulcher, Carol A.; Subhraveti, Pallavi; Keseler, Ingrid M.; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Mueller, Lukas A.; Ong, Quang; Paley, Suzanne; Pujar, Anuradha; Shearer, Alexander G.; Travers, Michael; Weerasinghe, Deepika; Zhang, Peifen; Karp, Peter D.

研究方向