John H. Maddocks - Publications, H-index & Citations

John H. Maddocks

indian institute of technology (iit) - madras

42H指数

152论文数

6.1K被引数

收录论文 32

发表时间

cgNA plus min: computation of sequence-dependent dsDNA energy-minimizing minicircles cgNA plus min: 序列依赖性dsDNA能量最小化微环的计算

Nucleic Acids Research

IF13.1

2026-05-22

PREAI

Singh, Raushan; Glowacki, Jaroslaw; Beaud, Marius; Padovano, Federica; Manning, Robert S.; Maddocks, John H.

Mechanics of two filaments in tight orthogonal contact 紧正交接触中两根细丝的力学

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-04-05

OAAI

Grandgeorge, Paul; Baek, Changyeob; Singh, Harmeet; Johanns, Paul; Sano, Tomohiko G.; Flynn, Alastair; Maddocks, John H.; Reis, Pedro M.

The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules

NUCLEIC ACIDS RESEARCH

IF13.1

2019-10-18

OAAI

Dans, Pablo D.; Balaceanu, Alexandra; Pasi, Marco; Patellis, Alessandro S.; Petkeviciute, Daiva; Walther, Jurgen; Hospital, Adam; Bayarri, Genis; Lavery, Richard; Maddocks, John H.; Orozco, Modesto

cgDNAweb: a web interface to the cgDNA sequence-dependent coarse-grain model of double-stranded DNA

NUCLEIC ACIDS RESEARCH

IF13.1

2018-06-14

OAAI

De Bruin, Lennart; Maddocks, John H.

Sequence-Dependent Persistence Lengths of DNA

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2017-03-24

OAAI

Mitchell, Jonathan S.; Glowacki, Jaroslaw; Grandchamp, Alexandre E.; Manning, Robert S.; Maddocks, John H.

Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles

NUCLEIC ACIDS RESEARCH

IF13.1

2017-02-09

OAAI

Pasi, Marco; Zakrzewska, Krystyna; Maddocks, John H.; Lavery, Richard

Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics

NUCLEIC ACIDS RESEARCH

IF13.1

2015-02-06

OAAI

Pasi, Marco; Maddocks, John H.; Lavery, Richard

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

NUCLEIC ACIDS RESEARCH

IF13.1

2014-09-26

170

OAAI

Pasi, Marco; Maddocks, John H.; Beveridge, David; Bishop, Thomas C.; Case, David A.; Cheatham, Thomas, III; Dans, Pablo D.; Jayaram, B.; Lankas, Filip; Laughton, Charles; Mitchell, Jonathan; Osman, Roman; Orozco, Modesto; Perez, Alberto; Petkeviciute, Daiva; Spackova, Nada; Sponer, Jiri; Zakrzewska, Krystyna; Lavery, Richard

cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNA

NUCLEIC ACIDS RESEARCH

IF13.1

2014-09-16

OAAI

Petkeviciute, D.; Pasi, M.; Gonzalez, O.; Maddocks, J. H.

Analyzing ion distributions around DNA

NUCLEIC ACIDS RESEARCH

IF13.1

2014-06-07

OAAI

Lavery, Richard; Maddocks, John H.; Pasi, Marco; Zakrzewska, Krystyna

A sequence-dependent rigid-base model of DNA

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2013-02-07

OAAI

Gonzalez, O.; Petkeviciute, D.; Maddocks, J. H.

Modeling the Sequence Dependent Rigidity of DNA with a Molecular Dynamics Parameterized Rigid Base Model

BIOPHYSICAL JOURNAL

IF3.1

2012-01-01

OAAI

Mitchell, Jonathan S.; Maddocks, John H.; Manning, Robert

Second-Order Comparison of Gaussian Random Functions and the Geometry of DNA Minicircles

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

IF3

2010-06-01

OAAI

Panaretos, Victor M.; Kraus, David; Maddocks, John H.

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

NUCLEIC ACIDS RESEARCH

IF13.1

2009-11-06

295

OAAI

Lavery, Richard; Zakrzewska, Krystyna; Beveridge, David; Bishop, Thomas C.; Case, David A.; Cheatham, Thomas, III; Dixit, Surjit; Jayaram, B.; Lankas, Filip; Laughton, Charles; Maddocks, John H.; Michon, Alexis; Osman, Roman; Orozco, Modesto; Perez, Alberto; Singh, Tanya; Spackova, Nada; Sponer, Jiri

Equity-Liabilities Distinction: The case for Co-operatives

JOURNAL OF INTERNATIONAL FINANCIAL MANAGEMENT & ACCOUNTING

IF8.2

2009-08-27

PREAI

Lopez-Espinosa, German; Maddocks, John; Polo-Garrido, Fernando

Conformational analysis of nucleic acids revisited: Curves

NUCLEIC ACIDS RESEARCH

IF13.1

2009-07-22

698

OAAI

Lavery, R.; Moakher, M.; Maddocks, J. H.; Petkeviciute, D.; Zakrzewska, K.

Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles

NUCLEIC ACIDS RESEARCH

IF13.1

2009-03-12

OAAI

Demurtas, Davide; Amzallag, Arnaud; Rawdon, Eric J.; Maddocks, John H.; Dubochet, Jacques; Stasiak, Andrzej

Structural motifs of biomolecules

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2007-10-30

OAAI

Banavar, Jayanth R.; Hoang, Trinh Xuan; Maddocks, John H.; Maritan, Amos; Poletto, Chiaral; Stasiak, Andrzej; Trovato, Antonio

Mathematics - Around the Mobius band

NATURE MATERIALS

IF38.5

2007-07-15

PREAI

Maddocks, John H.

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy

NUCLEIC ACIDS RESEARCH

IF13.1

2006-09-29

OAAI

Amzallag, Arnaud; Vaillant, Cedric; Jacob, Mathews; Unser, Michael; Bednar, Jan; Kahn, Jason D.; Dubochet, Jacques; Stasiak, Andrzej; Maddocks, John H.

研究方向