Bas van Breukelen - Publications, H-index & Citations

Bas van Breukelen

Utrecht University

28H指数

62论文数

2.6K被引数

收录论文 31

发表时间

Proteogenomic Features of the Highly Polymorphic Histidine-rich Glycoprotein Arose Late in Evolution 高度多态性的富含组氨酸的糖蛋白的蛋白质基因组学特征在进化后期出现

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2023-07-01

OAAI

Zou, Yang; van Breukelen, Bas; Pronker, Matti; Reiding, Karli; Heck, Albert J. R.

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas

CELL REPORTS

IF6.9

2015-06-01

OAAI

Giansanti, Piero; Aye, Thin Thin; van den Toorn, Henk; Peng, Mao; van Breukelen, Bas; Heck, Albert J. R.

ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2014-12-23

OAAI

Smit, Marjon A.; Maddalo, Gianluca; Greig, Kylie; Raaijmakers, Linsey M.; Possik, Patricia A.; van Breukelen, Bas; Cappadona, Salvatore; Heck, Albert J. R.; Altelaar, A. F. Maarten; Peeper, Daniel S.

Facilitating Protein Disulfide Mapping by a Combination of Pepsin Digestion, Electron Transfer Higher Energy Dissociation (EThcD), and a Dedicated Search Algorithm SlinkS

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2014-10-01

OAAI

Liu, Fan; van Breukelen, Bas; Heck, Albert J. R.

qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2014-08-01

OAAI

Walzer, Mathias; Pernas, Lucia Espona; Nasso, Sara; Bittremieux, Wout; Nahnsen, Sven; Kelchtermans, Pieter; Pichler, Peter; van den Toorn, Henk W. P.; Staes, An; Vandenbussche, Jonathan; Mazanek, Michael; Taus, Thomas; Scheltema, Richard A.; Kelstrup, Christian D.; Gatto, Laurent; van Breukelen, Bas; Aiche, Stephan; Valkenborg, Dirk; Laukens, Kris; Lilley, Kathryn S.; Olsen, Jesper V.; Heck, Albert J. R.; Mechtler, Karl; Aebersold, Ruedi; Gevaert, Kris; Vizcaino, Juan Antonio; Hermjakob, Henning; Kohlbacher, Oliver; Martens, Lennart

Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic Proteins

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2014-08-01

OAAI

Guerreiro, Ana C. L.; Benevento, Marco; Lehmann, Robert; van Breukelen, Bas; Post, Harm; Giansanti, Piero; Altelaar, A. F. Maarten; Axmann, Ilka M.; Heck, Albert J. R.

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

CELL REPORTS

IF6.9

2013-12-01

110

OAAI

Low, Teck Yew; van Heesch, Sebastiaan; van den Toorn, Henk; Giansanti, Piero; Cristobal, Alba; Toonen, Pim; Schafer, Sebastian; Huebner, Norbert; van Breukelen, Bas; Mohammed, Shabaz; Cuppen, Edwin; Heck, Albert J. R.; Guryev, Victor

Identification of Enriched PTM Crosstalk Motifs from Large-Scale Experimental Data Sets

JOURNAL OF PROTEOME RESEARCH

IF3.6

2013-10-23

PREAI

Peng, Mao; Scholten, Arjen; Heck, Albert J. R.; van Breukelen, Bas

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2012-12-01

105

OAAI

Cote, Richard G.; Griss, Johannes; Dianes, Jose A.; Wang, Rui; Wright, James C.; van den Toorn, Henk W. P.; van Breukelen, Bas; Heck, Albert J. R.; Hulstaert, Niels; Martens, Lennart; Reisinger, Florian; Csordas, Attila; Ovelleiro, David; Perez-Rivevol, Yasset; Barsnes, Harald; Hermjakob, Henning; Vizcaino, Juan Antonio

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

JOURNAL OF PROTEOME RESEARCH

IF3.6

2012-10-11

PREAI

Bleijerved, Onno B.; Wijten, Patrick; Cappadona, Salvatore; McClellan, Elizabeth A.; Polat, Ayse N.; Raijmakers, Reinout; Sels, Jan-Willem; Colle, Loes; Grasso, Simona; van den Toorn, Henk W.; van Breukelen, Bas; Stubbs, Andrew; Pasterkamp, Gerard; Heck, Albert J. R.; Hoefer, Imo E.; Scholten, Arjen

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

AMINO ACIDS

IF2.4

2012-07-22

100

OAAI

Cappadona, Salvatore; Baker, Peter R.; Cutillas, Pedro R.; Heck, Albert J. R.; van Breukelen, Bas

Protease bias in absolute protein quantitation 绝对蛋白质定量中的蛋白酶偏倚

NATURE METHODS

IF32.1

2012-05-30

PREAI

Peng, Mao; Taouatas, Nadia; Cappadona, Salvatore; van Breukelen, Bas; Mohammed, Shabaz; Scholten, Arjen; Heck, Albert J. R.

High confidence and sensitivity four-dimensional fractionation for human plasma proteome analysis 用于人血浆蛋白质组分析的高置信度和灵敏度四维分馏

AMINO ACIDS

IF2.4

2012-03-21

PREAI

Millioni, Renato; Tolin, Serena; Fadini, Gian Paolo; Falda, Marco; van Breukelen, Bas; Tessari, Paolo; Arrigoni, Giorgio

Database independent proteomics analysis of the ostrich and human proteome

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2011-12-22

OAAI

Altelaar, A. F. Maarten; Navarro, Danny; Boekhorst, Jos; van Breukelen, Bas; Snel, Berend; Mohammed, Shabaz; Heck, Albert J. R.

Improving SRM Assay Development: A Global Comparison between Triple Quadrupole, Ion Trap, and Higher Energy CID Peptide Fragmentation Spectra

JOURNAL OF PROTEOME RESEARCH

IF3.6

2011-07-21

PREAI

de Graaf, Erik L.; Altelaar, A. F. Maarten; van Breukelen, Bas; Mohammed, Shabaz; Heck, Albert J. R.

RockerBox: Analysis and Filtering of Massive Proteomics Search Results

JOURNAL OF PROTEOME RESEARCH

IF3.6

2011-02-07

PREAI

van den Toorn, Henk W. P.; Munoz, Javier; Mohammed, Shabaz; Raijmakers, Reinout; Heck, Albert J. R.; van Breukelen, Bas

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

BMC GENOMICS

IF3.7

2010-12-02

OAAI

Helbig, Andreas O.; Rosati, Sara; Pijnappel, Pim W. W. M.; van Breukelen, Bas; Timmers, Marc H. T. H.; Mohammed, Shabaz; Slijper, Monique; Heck, Albert J. R.

Profiling of N-Acetylated Protein Termini Provides In-depth Insights into the N-terminal Nature of the Proteome

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2010-05-01

115

OAAI

Helbig, Andreas O.; Gauci, Sharon; Raijmakers, Reinout; van Breukelen, Bas; Slijper, Monique; Mohammed, Shabaz; Heck, Albert J. R.

LysNDeNovo: An algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation

PROTEOMICS

IF3.9

2010-03-19

PREAI

van Breukelen, Bas; Georgiou, Alexandros; Drugan, Madelina M.; Taouatas, Nadia; Mohammed, Shabaz; Heck, Albert J. R.

In-depth Qualitative and Quantitative Profiling of Tyrosine Phosphorylation Using a Combination of Phosphopeptide Immunoaffinity Purification and Stable Isotope Dimethyl Labeling

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2010-01-01

172

OAAI

Boersema, Paul J.; Foong, Leong Yan; Ding, Vanessa M. Y.; Lemeer, Simone; van Breukelen, Bas; Philp, Robin; Boekhorst, Jos; Snel, Berend; den Hertog, Jeroen; Choo, Andre B. H.; Heck, Albert J. R.

研究方向