Samik Ghosh - Publications, H-index & Citations

Samik Ghosh

centre for cellular and molecular platforms

22H指数

88论文数

4.5K被引数

收录论文 24

发表时间

Multidimensional Physiological and Gut Microbiome Profiling Identifies Subtle Physiological Patterns in an Apparently Healthy Aging Indian Cohort: A Cross-Sectional Observational Study 多维生理和肠道微生物组分析识别出看似健康的印度老年人队列中微妙的生理模式：一项横断面观察性研究

Microorganisms

IF4.2

2026-09-19

OAAI

Gangaraju Divyashri; Harini Hutti; Lalitha Prasanna Madduri Venkata; Bipin Pradeep Kumar; Ayako Yachie; Samik Ghosh

Creating an engine of scientific discovery, an Indo-Japan perspective: learnings from IJNTC 2025 workshop 构建科学发现引擎：印度-日本视角——IJNTC 2025研讨会经验分享

npj Systems Biology and Applications

IF3.5

2026-04-22

OAAI

Sucheendra K. Palaniappan; Moreno Zolfo; Satish Kottapalli; Ajay Sethi; Johan Nyström-Persson; Daniel Evans-Yamamoto; Jihun Choi; Anton Kratz; Srinivas Padmanabhan; Ryota Yamada; Yosuke Ozawa; Natalia Polouliakh; Ashwini Patil; Manas Kala; Tavpritesh Sethi; Ganesh Bagler; Jun Seita; Samik Ghosh; Ravindranath Kancherla; Hiroaki Kitano

Precise and scalable metagenomic profiling with sample-tailored minimizer libraries 精准且可扩展的元基因组分析，采用样本定制的最小化库

NAR GENOMICS AND BIOINFORMATICS

IF2.8

2025-06-01

OAAI

Nystrom-Persson, Johan; Bapatdhar, Nishad; Ghosh, Samik

Noninvasive, label-free image approaches to predict multimodal molecular markers in pluripotency assessment

SCIENTIFIC REPORTS

IF3.9

2024-07-09

OAAI

Akiyoshi, Ryutaro; Hase, Takeshi; Sathiyananthavel, Mayuri; Ghosh, Samik; Kitano, Hiroaki; Yachie, Ayako

Large scale text mining for deriving useful insights: A case study focused on microbiome

FRONTIERS IN PHYSIOLOGY

IF3.4

2022-08-31

OAAI

Al Ahmed, Syed Ashif Jardary; Bapatdhar, Nishad; Kumar, Bipin Pradeep; Ghosh, Samik; Yachie, Ayako; Palaniappan, Sucheendra K.

Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer's disease 基于人工智能的计算框架，用于对阿尔茨海默病的新型可重定位药物进行药物靶标优先排序和推断

ALZHEIMERS RESEARCH & THERAPY

IF7.6

2021-05-03

OAAI

Tsuji, Shingo; Hase, Takeshi; Yachie-Kinoshita, Ayako; Nishino, Taiko; Ghosh, Samik; Kikuchi, Masataka; Shimokawa, Kazuro; Aburatani, Hiroyuki; Kitano, Hiroaki; Tanaka, Hiroshi

Multi-dimensional computational pipeline for large-scale deep screening of compound effect assessment: an in silico case study on ageing-related compounds

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2019-11-26

OAAI

Gupta, Vipul; Crudu, Alina; Matsuoka, Yukiko; Ghosh, Samik; Rozot, Roger; Marat, Xavier; Jager, Sibylle; Kitano, Hiroaki; Breton, Lionel

Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis

BMC GENOMICS

IF3.7

2018-09-27

OAAI

Polouliakh, Natalia; Horton, Paul; Shibanai, Kazuhiro; Takata, Kodai; Ludwig, Vanessa; Ghosh, Samik; Kitano, Hiroaki

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry

CELL REPORTS

IF6.9

2017-03-01

OAAI

Caron, Etienne; Roncagalli, Romain; Hase, Takeshi; Wolski, Witold E.; Choi, Meena; Menoita, Marisa G.; Durand, Stephane; Garcia-Blesa, Antonio; Fierro-Monti, Ivo; Sajic, Tatjana; Heusel, Moritz; Weiss, Tobias; Malissen, Marie; Schlapbach, Ralph; Collins, Ben C.; Ghosh, Samik; Kitano, Hiroaki; Aebersold, Ruedi; Malissen, Bernard; Gstaiger, Matthias

A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data

BMC GENOMICS

IF3.7

2016-12-22

OAAI

Hu, Yongli; Hase, Takeshi; Li, Hui Peng; Prabhakar, Shyam; Kitano, Hiroaki; Ng, See Kiong; Ghosh, Samik; Wee, Lawrence Jin Kiat

Digital health revolution perfect storm or perfect opportunity for pharmaceutical R&D?

DRUG DISCOVERY TODAY

IF7.5

2016-06-01

PREAI

Hird, Nick; Ghosh, Samik; Kitano, Hiroaki

Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2016-01-07

OAAI

Kawakami, Eiryo; Singh, Vivek K.; Matsubara, Kazuko; Ishii, Takashi; Matsuoka, Yukiko; Hase, Takeshi; Kulkarni, Priya; Siddiqui, Kenaz; Kodilkar, Janhavi; Danve, Nitisha; Subramanian, Indhupriya; Katoh, Manami; Shimizu-Yoshida, Yuki; Ghosh, Samik; Jere, Abhay; Kitano, Hiroaki

Elucidation of the molecular mechanisms underlying adverse reactions associated with a kinase inhibitor using systems toxicology

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2015-09-28

OAAI

Amemiya, Takahiro; Honma, Masashi; Kariya, Yoshiaki; Ghosh, Samik; Kitano, Hiroaki; Kurachi, Yoshihisa; Fujita, Ken-ichi; Sasaki, Yasutsuna; Homma, Yukio; Abernethy, Darrel R.; Kume, Haruki; Suzuki, Hiroshi

CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data

BMC GENOMICS

IF3.7

2012-01-01

OAAI

Shoemaker, Jason E.; Lopes, Tiago J. S.; Ghosh, Samik; Matsuoka, Yukiko; Kawaoka, Yoshihiro; Kitano, Hiroaki

Software for systems biology: from tools to integrated platforms 系统生物学软件: 从工具到集成平台

NATURE REVIEWS GENETICS

IF52

2011-11-03

196

PREAI

Ghosh, Samik; Matsuoka, Yukiko; Asai, Yoshiyuki; Hsin, Kun-Yi; Kitano, Hiroaki

Social engineering for virtual 'big science' in systems biology

NATURE CHEMICAL BIOLOGY

IF13.7

2011-05-17

PREAI

Kitano, Hiroaki; Ghosh, Samik; Matsuoka, Yukiko

A comprehensive map of the mTOR signaling network mTOR信令网络的综合图

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2010-12-21

199

OAAI

Caron, Etienne; Ghosh, Samik; Matsuoka, Yukiko; Ashton-Beaucage, Dariel; Therrien, Marc; Lemieux, Sebastien; Perreault, Claude; Roux, Philippe P.; Kitano, Hiroaki

Connecting the dots: role of standardization and technology sharing in biological simulation

DRUG DISCOVERY TODAY

IF7.5

2010-12-01

PREAI

Ghosh, Samik; Matsuoka, Yukiko; Kitano, Hiroaki

A comprehensive molecular interaction map of the budding yeast cell cycle 芽殖酵母细胞周期的综合分子相互作用图

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2010-09-21

OAAI

Kaizu, Kazunari; Ghosh, Samik; Matsuoka, Yukiko; Moriya, Hisao; Shimizu-Yoshida, Yuki; Kitano, Hiroaki