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J

Jaime A. Castro-Mondragón

University of Oslo
H指数:17
被引数:8,899
浏览量:0

个人简介

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教育背景

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工作经历

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荣誉奖项

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JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models

JASPAR 2026: 转录因子结合谱的扩展与深度学习模型的整合

NUCLEIC ACIDS RESEARCH
IF13.1
2025-12-010
OAAI
Ovek baydar, Damla; Rauluseviciute, Ieva; Aronsen, Dina R.; Blanc-Mathieu, Romain; Bonthuis, Ine; De beukelaer, Herman; Ferenc, Katalin; Jegou, Alice; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jeremy; Pochon, Mathis; Yun, Chang M.; Ramalingam, Vivekanandan; Deshpande, Salil Sanjay; Patel, Aman; Marinov, Georgi k; Wang, Austin T.; Aguirre, Alejandro; Castro-Mondragon, Jaime a; Baranasic, Damir; Cheneby, Jeanne; Gundersen, Sveinung; Johansen, Morten; Khan, Aziz; Kuijjer, Marieke L.; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Vandepoele, Klaas; Wasserman, Wyeth w; Parcy, Francois; Kundaje, Anshul; Mathelier, Anthony
Identification of transcription factor co-binding patterns with non-negative matrix factorization
NUCLEIC ACIDS RESEARCH
IF13.1
2024-09-010
OAAI
Rauluseviciute, Ieva; Launay, Timothee; Barzaghi, Guido; Nikumbh, Sarvesh; Lenhard, Boris; Krebs, Arnaud Regis; Castro-Mondragon, Jaime A.; Mathelier, Anthony
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

JASPAR 2024: 转录因子结合谱开放数据库20周年

NUCLEIC ACIDS RESEARCH
IF13.1
2023-11-14109
OAAI
Rauluseviciute, Ieva; Riudavets-Puig, Rafael; Blanc-Mathieu, Romain; Castro-Mondragon, Jaime A.; Ferenc, Katalin; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jeremy; Cheneby, Jeanne; Baranasic, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, Sveinung; Johansen, Morten; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Wasserman, Wyeth W.; Parcy, Francois; Mathelier, Anthony
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers
NUCLEIC ACIDS RESEARCH
IF13.1
2022-12-083
OAAI
Castro-Mondragon, Jaime A.; Aure, Miriam Ragle; Lingjaerde, Ole Christian; Langerod, Anita; Martens, John W. M.; Borresen-Dale, Anne-Lise; Kristensen, Vessela N.; Mathelier, Anthony
RSAT 2022: regulatory sequence analysis tools

RSAT 2022: 调控序列分析工具

NUCLEIC ACIDS RESEARCH
IF13.1
2022-05-1145
OAAI
Santana-Garcia, Walter; Castro-Mondragon, Jaime A.; Padilla-Galvez, Monica; Nguyen, Nga Thi Thuy; Elizondo-Salas, Ana; Ksouri, Najla; Gerbes, Francois; Thieffry, Denis; Vincens, Pierre; Contreras-Moreira, Bruno; van Helden, Jacques; Thomas-Chollier, Morgane; Medina-Rivera, Alejandra
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

JASPAR 2022: 转录因子结合谱开放存取数据库的第9版

NUCLEIC ACIDS RESEARCH
IF13.1
2021-11-301.1K
OAAI
Castro-Mondragon, Jaime A.; Riudavets-Puig, Rafael; Rauluseviciute, Ieva; Lemma, Roza Berhanu; Turchi, Laura; Blanc-Mathieu, Romain; Lucas, Jeremy; Boddie, Paul; Khan, Aziz; Perez, Nicolas Manosalva; Fornes, Oriol; Leung, Tiffany Y.; Aguirre, Alejandro; Hammal, Fayrouz; Schmelter, Daniel; Baranasic, Damir; Ballester, Benoit; Sandelin, Albin; Lenhard, Boris; Vandepoele, Klaas; Wasserman, Wyeth W.; Parcy, Francois; Mathelier, Anthony
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response
NATURE COMMUNICATIONS
IF15.7
2021-11-1818
OAAI
Santiago-Algarra, David; Souaid, Charbel; Singh, Himanshu; Dao, Lan T. M.; Hussain, Saadat; Medina-Rivera, Alejandra; Ramirez-Navarro, Lucia; Castro-Mondragon, Jaime A.; Sadouni, Nori; Charbonnier, Guillaume; Spicuglia, Salvatore
UniBind: maps of high-confidence direct TF-DNA interactions across nine species

UniBind: 九个物种的高置信度直接tf-dna相互作用图

BMC GENOMICS
IF3.7
2021-06-2650
OAAI
Puig, Rafael Riudavets; Boddie, Paul; Khan, Aziz; Castro-Mondragon, Jaime Abraham; Mathelier, Anthony
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example
PLANT PHYSIOLOGY
IF6.9
2021-01-1321
OAAI
Ksouri, Najla; Castro-Mondragon, Jaime A.; Montardit-Tarda, Francesc; van Helden, Jacques; Contreras-Moreira, Bruno; Gogorcena, Yolanda
RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach
FRONTIERS IN MICROBIOLOGY
IF4.5
2020-11-055
OAAI
Taboada-Castro, Hermenegildo; Castro-Mondragon, Jaime Abraham; Aguilar-Vera, Alejandro; Hernandez-alvarez, Alfredo Jose; van Helden, Jacques; Encarnacion-Guevara, Sergio
JASPAR 2020: update of the open-access database of transcription factor binding profiles

JASPAR 2020: 转录因子结合概况开放存取数据库的更新

NUCLEIC ACIDS RESEARCH
IF13.1
2019-11-081.4K
OAAI
Fornes, Oriol; Castro-Mondragon, Jaime A.; Khan, Aziz; van der Lee, Robin; Zhang, Xi; Richmond, Phillip A.; Modi, Bhavi P.; Correard, Solenne; Gheorghe, Marius; Baranasic, Damir; Santana-Garcia, Walter; Tan, Ge; Cheneby, Jeanne; Ballester, Benoit; Parcy, Francois; Sandelin, Albin; Lenhard, Boris; Wasserman, Wyeth W.; Mathelier, Anthony
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NUCLEIC ACIDS RESEARCH
IF13.1
2018-05-02147
OAAI
Nga Thi Thuy Nguyen; Contreras-Moreira, Bruno; Castro-Mondragon, Jaime A.; Santana-Garcia, Walter; Ossio, Raul; Robles-Espinoza, Carla Daniela; Bahin, Mathieu; Collombet, Samuel; Vincens, Pierre; Thieffry, Denis; van Helden, Jacques; Medina-Rivera, Alejandra; Thomas-Chollier, Morgane
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework (vol 46, pg 260, 2017)
NUCLEIC ACIDS RESEARCH
IF13.1
2017-11-17362
OAAI
Khan, Aziz; Fornes, Oriol; Stigliani, Arnaud; Gheorghe, Marius; Castro-Mondragon, Jaime A.; van der Lee, Robin; Bessy, Adrien; Cheneby, Jeanne; Kulkarni, Shubhada R.; Tan, Ge; Baranasic, Damir; Arenillas, David J.; Sandelin, Albin; Vandepoele, Klaas; Lenhard, Boris; Ballester, Benoit; Wasserman, Wyeth W.; Parcy, Francois; Mathelier, Anthony
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

JASPAR 2018: 转录因子结合概况及其网络框架的开放访问数据库的更新

NUCLEIC ACIDS RESEARCH
IF13.1
2017-11-13954
OAAI
Khan, Aziz; Fornes, Oriol; Stigliani, Arnaud; Gheorghe, Marius; Castro-Mondragon, Jaime A.; van der Lee, Robin; Bessy, Adrien; Cheneby, Jeanne; Kulkarni, Shubhada R.; Tan, Ge; Baranasic, Damir; Arenillas, David J.; Sandelin, Albin; Vandepoele, Klaas; Lenhard, Boris; Ballester, Benoit; Wasserman, Wyeth W.; Parcy, Francois; Mathelier, Anthony
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections
NUCLEIC ACIDS RESEARCH
IF13.1
2017-06-0785
OAAI
Castro-Mondragon, Jaime Abraham; Jaeger, Sebastien; Thieffry, Denis; Thomas-Chollier, Morgane; van Helden, Jacques
Genome-wide characterization of mammalian promoters with distal enhancer functions
NATURE GENETICS
IF31.8
2017-06-05198
PREAI
Dao, Lan T. M.; Galindo-Albarran, Ariel O.; Castro-Mondragon, Jaime A.; Andrieu-Soler, Charlotte; Medina-Rivera, Alejandra; Souaid, Charbel; Charbonnier, Guillaume; Griffon, Aurelien; Vanhille, Laurent; Stephen, Tharshana; Alomairi, Jaafar; Martin, David; Torres, Magali; Fernandez, Nicolas; Soler, Eric; van Helden, Jacques; Puthier, Denis; Spicuglia, Salvatore
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
NUCLEIC ACIDS RESEARCH
IF13.1
2015-11-02399
OAAI
Gama-Castro, Socorro; Salgado, Heladia; Santos-Zavaleta, Alberto; Ledezma-Tejeida, Daniela; Muniz-Rascado, Luis; Santiago Garcia-Sotelo, Jair; Alquicira-Hernandez, Kevin; Martinez-Flores, Irma; Pannier, Lucia; Castro-Mondragon, Jaime Abraham; Medina-Rivera, Alejandra; Solano-Lira, Hilda; Bonavides-Martinez, Cesar; Perez-Rueda, Ernesto; Alquicira-Hernandez, Shirley; Porron-Sotelo, Liliana; Lopez-Fuentes, Alejandra; Hernandez-Koutoucheva, Anastasia; Del Moral-Chavez, Victor; Rinaldi, Fabio; Collado-Vides, Julio
RSAT 2015: Regulatory Sequence Analysis Tools
NUCLEIC ACIDS RESEARCH
IF13.1
2015-04-22196
OAAI
Medina-Rivera, Alejandra; Defrance, Matthieu; Sand, Olivier; Herrmann, Carl; Castro-Mondragon, Jaime A.; Delerce, Jeremy; Jaeger, Sebastien; Blanchet, Christophe; Vincens, Pierre; Caron, Christophe; Staines, Daniel M.; Contreras-Moreira, Bruno; Artufel, Marie; Charbonnier-Khamvongsa, Lucie; Hernandez, Celine; Thieffry, Denis; Thomas-Chollier, Morgane; van Helden, Jacques
Genomic basis of symbiovar mimosae in Rhizobium etli
BMC GENOMICS
IF3.7
2014-07-0826
OAAI
Rogel, Marco A.; Bustos, Patricia; Santamaria, Rosa I.; Gonzalez, Victor; Romero, David; Cevallos, Miguel Angel; Lozano, Luis; Castro-Mondragon, Jaime; Martinez-Romero, Julio; Ormeno-Orrillo, Ernesto; Martinez-Romero, Esperanza

研究方向

暂未获取到该数据
A
Anthony Mathelier
H 指数:37论文数:156被引数:1.5万
J
Jacques van Helden
H 指数:46论文数:210被引数:1.1万
B
Boris Lenhard
H 指数:77论文数:277被引数:4.1万
W
Wyeth W. Wasserman
H 指数:75论文数:386被引数:3.1万
A
Albin Sandelin
H 指数:69论文数:269被引数:4.6万
A
Aziz Khan
H 指数:29论文数:148被引数:1.0万
D
Damir Baranas̆ić
H 指数:15论文数:46被引数:7,466
F
François Parcy
H 指数:60论文数:213被引数:2.2万
A
Alejandra Medina-Rivera
H 指数:20论文数:90被引数:3,559
O
Oriol Fornés
H 指数:22论文数:109被引数:9,043