Jacques van Helden - Publications, H-index & Citations

Jacques van Helden

CIRAD

46H指数

210论文数

1.2W被引数

收录论文 48

发表时间

FAIR plus E pathogen data for surveillance and research: lessons from COVID-19

FRONTIERS IN PUBLIC HEALTH

IF3.4

2023-11-21

OAAI

Neves, Aitana; Cuesta, Isabel; Hjerde, Erik; Klemetsen, Terje; Salgado, David; van Helden, Jacques; Rahman, Nadim; Fatima, Nazeefa; Karathanasis, Nestoras; Zmora, Pawel; Akerstrom, Wolmar Nyberg; Grellscheid, Sushma Nagaraja; Waheed, Zahra; Blomberg, Niklas

Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-27

228

OAAI

Godard, Patrice; Urrestarazu, Antonio; Vissers, Stephan; Kontos, Kevin; Bontempi, Gianluca; van Helden, Jacques; Andre, Bruno

RSAT 2022: regulatory sequence analysis tools RSAT 2022: 调控序列分析工具

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-11

OAAI

Santana-Garcia, Walter; Castro-Mondragon, Jaime A.; Padilla-Galvez, Monica; Nguyen, Nga Thi Thuy; Elizondo-Salas, Ana; Ksouri, Najla; Gerbes, Francois; Thieffry, Denis; Vincens, Pierre; Contreras-Moreira, Bruno; van Helden, Jacques; Thomas-Chollier, Morgane; Medina-Rivera, Alejandra

An appeal for an objective, open, and transparent scientific debate about the origin of SARS-CoV-2

LANCET

IF88.5

2021-10-01

OAAI

van Helden, Jacques; Butler, Colin D.; Achaz, Guillaume; Canard, Bruno; Casane, Didier; Claverie, Jean-Michel; Colombo, Fabien; Courtier, Virginie; Ebright, Richard H.; Graner, Francois; Leitenberg, Milton; Morand, Serge; Petrovsky, Nikolai; Segreto, Rossana; Decroly, Etienne; Halloy, Jose

Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review

ENVIRONMENTAL CHEMISTRY LETTERS

IF20.4

2021-02-04

OAAI

Sallard, Erwan; Halloy, Jose; Casane, Didier; Decroly, Etienne; van Helden, Jacques

COVID-19 epidemiologic surveillance using wastewater

ENVIRONMENTAL CHEMISTRY LETTERS

IF20.4

2021-01-28

OAAI

Sharma, Virender K.; Jinadatha, Chetan; Lichtfouse, Eric; Decroly, Etienne; van Helden, Jacques; Choi, Hosoon; Chatterjee, Piyali

biotoolsSchema: a formalized schema for bioinformatics software description biotoolsSchema: 生物信息学软件描述的形式化模式

GIGASCIENCE

IF3.9

2021-01-27

OAAI

Ison, Jon; Ienasescu, Hans; Rydza, Emil; Chmura, Piotr; Rapacki, Kristoffer; Gaignard, Alban; Schwaemmle, Veit; van Helden, Jacques; Kalas, Matus; Menager, Herve

Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example

PLANT PHYSIOLOGY

IF6.9

2021-01-13

OAAI

Ksouri, Najla; Castro-Mondragon, Jaime A.; Montardit-Tarda, Francesc; van Helden, Jacques; Contreras-Moreira, Bruno; Gogorcena, Yolanda

RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-11-05

OAAI

Taboada-Castro, Hermenegildo; Castro-Mondragon, Jaime Abraham; Aguilar-Vera, Alejandro; Hernandez-alvarez, Alfredo Jose; van Helden, Jacques; Encarnacion-Guevara, Sergio

Ancestral state reconstruction of metabolic pathways across pangenome ensembles

MICROBIAL GENOMICS

IF4

2020-11-01

OAAI

Psomopoulos, Fotis E.; van Helden, Jacques; Medigue, Claudine; Chasapi, Anastasia; Ouzounis, Christos A.

In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication

SCIENTIFIC REPORTS

IF3.9

2020-08-04

241

OAAI

Touret, Franck; Gilles, Magali; Barral, Karine; Nougairede, Antoine; van Helden, Jacques; Decroly, Etienne; de Lamballerie, Xavier; Coutard, Bruno

Redefining fundamental concepts of transcription initiation in bacteria 重新定义细菌转录起始的基本概念

NATURE REVIEWS GENETICS

IF52

2020-07-14

OAAI

Mejia-Almonte, Citlalli; Busby, Stephen J. W.; Wade, Joseph T.; van Helden, Jacques; Arkin, Adam P.; Stormo, Gary D.; Eilbeck, Karen; Palsson, Bernhard O.; Galagan, James E.; Collado-Vides, Julio

The bio.tools registry of software tools and data resources for the life sciences

GENOME BIOLOGY

IF9.4

2019-08-12

OAAI

Ison, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Menager, Herve; Kalas, Matus; Schwammle, Veit; Gruening, Bjoern; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Varekova, Radka Svobodova; Racek, Tomas; Vondrasek, Jiri; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyronen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpi, Josep; Zambelli, Federico; Savakis, Babis; Leskosek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Longreen, Peter; Brunak, Soren

RSAT 2018: regulatory sequence analysis tools 20th anniversary

NUCLEIC ACIDS RESEARCH

IF13.1

2018-05-02

147

OAAI

Nga Thi Thuy Nguyen; Contreras-Moreira, Bruno; Castro-Mondragon, Jaime A.; Santana-Garcia, Walter; Ossio, Raul; Robles-Espinoza, Carla Daniela; Bahin, Mathieu; Collombet, Samuel; Vincens, Pierre; Thieffry, Denis; van Helden, Jacques; Medina-Rivera, Alejandra; Thomas-Chollier, Morgane

Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide

SCIENTIFIC REPORTS

IF3.9

2017-11-24

OAAI

Cadby, Ian T.; Faulkner, Matthew; Cheneby, Jeanne; Long, Justine; van Helden, Jacques; Dolla, Alain; Cole, Jeffrey A.

Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis collected from Two Distinct cameroonian Foci: coordinated signatures of the Midguts' remodeling as T-congolense-supportive niches

FRONTIERS IN IMMUNOLOGY

IF5.9

2017-07-28

OAAI

Ngoune, Jean M. Tsagmo; Njiokou, Flobert; Loriod, Beatrice; Kame-Ngasse, Ginette; Fernandez-Nunez, Nicolas; Rioualen, Claire; van Helden, Jacques; Geiger, Anne

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

NUCLEIC ACIDS RESEARCH

IF13.1

2017-06-07

OAAI

Castro-Mondragon, Jaime Abraham; Jaeger, Sebastien; Thieffry, Denis; Thomas-Chollier, Morgane; van Helden, Jacques

Genome-wide characterization of mammalian promoters with distal enhancer functions

NATURE GENETICS

IF31.8

2017-06-05

198

PREAI

Dao, Lan T. M.; Galindo-Albarran, Ariel O.; Castro-Mondragon, Jaime A.; Andrieu-Soler, Charlotte; Medina-Rivera, Alejandra; Souaid, Charbel; Charbonnier, Guillaume; Griffon, Aurelien; Vanhille, Laurent; Stephen, Tharshana; Alomairi, Jaafar; Martin, David; Torres, Magali; Fernandez, Nicolas; Soler, Eric; van Helden, Jacques; Puthier, Denis; Spicuglia, Salvatore

Confidence intervals are no salvation from the alleged fickleness of the P value

NATURE METHODS

IF32.1

2016-07-28

PREAI

van Helden, Jacques

Deciphering the adaptation strategies of Desulfovibrio piezophilus to hydrostatic pressure through metabolic and transcriptional analyses

ENVIRONMENTAL MICROBIOLOGY REPORTS

IF2.7

2016-07-05

PREAI

Amrani, Amira; van Helden, Jacques; Bergon, Aurelie; Aouane, Aicha; Ben Hania, Wajdi; Tamburini, Christian; Loriod, Beatrice; Imbert, Jean; Ollivier, Bernard; Pradel, Nathalie; Dolla, Alain

研究方向