未登录 CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments CaDAVEr：一个跨越脊椎动物环境的微生物分解者宏基因组组装基因组目录 Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L. 分享 收藏
RSM01, a novel respiratory syncytial virus monoclonal antibody: preclinical characterization and results of a first-in-human, randomised clinical trial Bonavia, Aurelio; Levi, Micha; Rouha, Harald; Badarau, Adriana; Terstappen, Jonne; Watson, Shayne; Anderson, Aparna B.; White, Joleen T.; Ananworanich, Jintanat; Taylor, Dale; Radivojevic, Andrijana; Shaffer, Michael; Stamm, Luisa M.; Dunne, Michael W. 分享 收藏
Time-resolved multi-omics reveals diverse metabolic strategies of Salmonella during diet-induced inflammation Kokkinias, Katherine; Sabag-Daigle, Anice; Kim, Yongseok; Leleiwi, Ikaia; Shaffer, Michael; Kevorkian, Richard; Daly, Rebecca A.; Wysocki, Vicki H.; Borton, Mikayla A.; Ahmer, Brian M. M.; Wrighton, Kelly C. 分享 收藏
Gut microbiota carbon and sulfur metabolisms support Salmonella infections Leleiwi, Ikaia; Kokkinias, Katherine; Kim, Yongseok; Baniasad, Maryam; Shaffer, Michael; Sabag-Daigle, Anice; Daly, Rebecca A.; Flynn, Rory M.; Wysocki, Vicki H.; Ahmer, Brian M. M.; Borton, Mikayla A.; Wrighton, Kelly C. 分享 收藏
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection Kim, Yongseok; Kokkinias, Katherine; Sabag-Daigle, Anice; Leleiwi, Ikaia; Borton, Mikayla; Shaffer, Michael; Baniasad, Maryam; Daly, Rebecca; Ahmer, Brian M. M.; Wrighton, Kelly C.; Wysocki, Vicki H. 分享 收藏
Targeted curation of the gut microbial gene content modulating human cardiovascular disease 调节人类心血管疾病的肠道微生物基因含量的靶向治疗 Borton, Mikayla A.; Shaffer, Michael; Hoyt, David W.; Jiang, Ruisheng; Ellenbogen, Jared B.; Purvine, Samuel; Nicora, Carrie D.; Eder, Elizabeth K.; Wong, Allison R.; Smulian, A. George; Lipton, Mary S.; Krzycki, Joseph A.; Wrighton, Kelly C. 分享 收藏
Very early life microbiome and metabolome correlates with primary vaccination variability in children Shaffer, Michael; Best, Katharine; Tang, Catherine; Liang, Xue; Schulz, Steven; Gonzalez, Eduardo; White, Cory H.; Wyche, Thomas P.; Kang, John; Wesseling, Hendrik; Topcuoglu, Beguem D.; Cairns, Thomas; Sana, Theodore R.; Kaufhold, Robin M.; Maritz, Julia M.; Woelk, Christopher H.; Swaminathan, Gokul; Norton, James E., Jr.; Pichichero, Michael E. 分享 收藏
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Exposing new taxonomic variation with inflammation - a murine model-specific genome database for gut microbiome researchers Leleiwi, Ikaia; Rodriguez-Ramos, Josue; Shaffer, Michael; Sabag-Daigle, Anice; Kokkinias, Katherine; Flynn, Rory M.; Daly, Rebecca A.; Kop, Linnea F. M.; Solden, Lindsey M.; Ahmer, Brian M. M.; Borton, Mikayla A.; Wrighton, Kelly C. 分享 收藏
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Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments Rodriguez-Ramos, Josue A.; Borton, Mikayla A.; McGivern, Bridget B.; Smith, Garrett J.; Solden, Lindsey M.; Shaffer, Michael; Daly, Rebecca A.; Purvine, Samuel O.; Nicora, Carrie D.; Eder, Elizabeth K.; Lipton, Mary; Hoyt, David W.; Stegen, James C.; Wrighton, Kelly C. 分享 收藏
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DRAM for distilling microbial metabolism to automate the curation of microbiome function Shaffer, Michael; Borton, Mikayla A.; McGivern, Bridget B.; Zayed, Ahmed A.; La Rosa, Sabina Leanti; Solden, Lindsey M.; Liu, Pengfei; Narrowe, Adrienne B.; Rodriguez-Ramos, Josue; Bolduc, Benjamin; Gazitua, M. Consuelo; Daly, Rebecca A.; Smith, Garrett J.; Vik, Dean R.; Pope, Phil B.; Sullivan, Matthew B.; Roux, Simon; Wrighton, Kelly C. 分享 收藏
An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men (vol 6, 198, 2018) Armstrong, Abigail J. S.; Shaffer, Michael; Nusbacher, Nichole M.; Griesmer, Christine; Fiorillo, Suzanne; Schneider, Jennifer M.; Neff, C. Preston; Li, Sam X.; Fontenot, Andrew P.; Campbell, Thomas; Palmer, Brent E.; Lozupone, Catherine A. 分享 收藏
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (vol 37, pg 852, 2019) 使用QIIME 2的可重复、交互式、可扩展和可扩展的微生物组数据科学 (第37卷，852页，2019页) Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R.; Bokulich, Nicholas A.; Abnet, Christian C.; Al-Ghalith, Gabriel A.; Alexander, Harriet; Alm, Eric J.; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E.; Bittinger, Kyle; Brejnrod, Asker; Brislawn, Colin J.; Brown, C. Titus; Callahan, Benjamin J.; Caraballo-Rodriguez, Andres Mauricio; Chase, John; Cope, Emily K.; Da Silva, Ricardo; Diener, Christian; Dorrestein, Pieter C.; Douglas, Gavin M.; Durall, Daniel M.; Duvallet, Claire; Edwardson, Christian F.; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M.; Gibbons, Sean M.; Gibson, Deanna L.; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A.; Janssen, Stefan; Jarmusch, Alan K.; Jiang, Lingjing; Kaehler, Benjamin D.; Bin Kang, Kyo; Keefe, Christopher R.; Keim, Paul; Kelley, Scott T.; Knights, Dan; Koester, Irina; Kosciolek, Tomasz; Kreps, Jorden; Langille, Morgan G. I.; Lee, Joslynn; Ley, Ruth; Liu, Yong-Xin; Loftfield, Erikka; Lozupone, Catherine; Maher, Massoud; Marotz, Clarisse; Martin, Bryan D.; McDonald, Daniel; McIver, Lauren J.; Melnik, Alexey V.; Metcalf, Jessica L.; Morgan, Sydney C.; Morton, Jamie T.; Naimey, Ahmad Turan; Navas-Molina, Jose A.; Nothias, Louis Felix; Orchanian, Stephanie B.; Pearson, Talima; Peoples, Samuel L.; Petras, Daniel; Preuss, Mary Lai; Pruesse, Elmar; Rasmussen, Lasse Buur; Rivers, Adam; Robeson, Michael S., II; Rosenthal, Patrick; Segata, Nicola; Shaffer, Michael; Shiffer, Arron; Sinha, Rashmi; Song, Se Jin; Spear, John R.; Swafford, Austin D.; Thompson, Luke R.; Torres, Pedro J.; Trinh, Pauline; Tripathi, Anupriya; Turnbaugh, Peter J.; Ul-Hasan, Sabah; van der Hooft, Justin J. J.; Vargas, Fernando; Vazquez-Baeza, Yoshiki; Vogtmann, Emily; von Hippel, Max; Walters, William; Walters, William; Wan, Yunhu; Wang, Mingxun; Warren, Jonathan; Weber, Kyle C.; Williamson, Charles H. D.; Willis, Amy D.; Xu, Zhenjiang Zech; Zaneveld, Jesse R.; Zhang, Yilong; Zhu, Qiyun; Knight, Rob; Caporaso, J. Gregory 分享 收藏
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 使用QIIME 2的可重复、交互式、可扩展和可扩展的微生物组数据科学 Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R.; Bokulich, NicholasA.; Abnet, Christian C.; Al-Ghalith, Gabriel A.; Alexander, Harriet; Alm, Eric J.; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E.; Bittinger, Kyle; Brejnrod, Asker; Brislawn, Colin J.; Brown, C. Titus; Callahan, Benjamin J.; Caraballo-Rodriguez, Andres Mauricio; Chase, John; Cope, Emily K.; Da Silva, Ricardo; Diener, Christian; Dorrestein, Pieter C.; Douglas, Gavin M.; Durall, Daniel M.; Duvallet, Claire; Edwardson, Christian F.; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M.; Gibbons, Sean M.; Gibson, Deanna L.; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A.; Janssen, Stefan; Jarmusch, Alan K.; Jiang, Lingjing; Kaehler, Benjamin D.; Bin Kang, Kyo; Keefe, Christopher R.; Keim, Paul; Kelley, Scott T.; Knights, Dan; Koester, Irina; Kosciolek, Tomasz; Kreps, Jorden; Langille, Morgan G. I.; Lee, Joslynn; Ley, Ruth; Liu, Yong-Xin; Loftfield, Erikka; Lozupone, Catherine; Maher, Massoud; Marotz, Clarisse; Martin, Bryan D.; McDonald, Daniel; McIver, Lauren J.; Melnik, Alexey V.; Metcalf, Jessica L.; Morgan, Sydney C.; Morton, Jamie T.; Naimey, Ahmad Turan; Navas-Molina, Jose A.; Nothias, Louis Felix; Orchanian, Stephanie B.; Pearson, Talima; Peoples, Samuel L.; Petras, Daniel; Preuss, Mary Lai; Pruesse, Elmar; Rasmussen, Lasse Buur; Rivers, Adam; Robeson, Michael S., II; Rosenthal, Patrick; Segata, Nicola; Shaffer, Michael; Shiffer, Arron; Sinha, Rashmi; Song, Se Jin; Spear, John R.; Swafford, Austin D.; Thompson, Luke R.; Torres, Pedro J.; Trinh, Pauline; Tripathi, Anupriya; Turnbaugh, Peter J.; Ul-Hasan, Sabah; vander Hooft, Justin J. J.; Vargas, Fernando; Vazquez-Baeza, Yoshiki; Vogtmann, Emily; von Hippel, Max; Walters, William; Wan, Yunhu; Wang, Mingxun; Warren, Jonathan; Weber, Kyle C.; Williamson, Charles H. D.; Willis, Amy D.; Xu, Zhenjiang Zech; Zaneveld, Jesse R.; Zhang, Yilong; Zhu, Qiyun; Knight, Rob; Caporaso, J. Gregory 分享 收藏
Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection Li, Sam X.; Sen, Sharon; Schneider, Jennifer M.; Xiong, Ka-Na; Nusbacher, Nichole M.; Moreno-Huizar, Nancy; Shaffer, Michael; Armstrong, Abigail J. S.; Severs, Erin; Kuhn, Kristine; Neff, Charles P.; McCarter, Martin; Campbells, Thomas; Lozupone, Catherine A.; Palmer, Brent E. 分享 收藏
An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men Armstrong, Abigail J. S.; Shaffer, Michael; Nusbacher, Nichole M.; Griesmer, Christine; Fiorillo, Suzanne; Schneider, Jennifer M.; Neff, C. Preston; Li, Sam X.; Fontenot, Andrew P.; Campbell, Thomas; Palmer, Brent E.; Lozupone, Catherine A. 分享 收藏
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