J. Cesar Ignacio‐Espinoza

university of southern california

16H指数

31论文数

4.3K被引数

收录论文 14

发表时间

In Situ Bacterioplankton Growth Partitioning by High-Resolution Metatranscriptomics 基于高分辨率元转录组学的原位浮游细菌生长分配

Environmental Microbiology Reports

IF2.7

2026-07-09

OAAI

J. Cesar Ignacio-Espinoza; Yuxuan Zou; Andrew Long; Shengwei Hou; David M. Needham; Jed A. Fuhrman

Local monitoring of SARS-CoV-2 variants in two large California counties in 2021

SCIENTIFIC REPORTS

IF3.9

2022-10-11

OAAI

Kojima, Noah; Khorosheva, Eugenia; Lopez, Lauren; Hanewich-Hollatz, Mikhail; Ignacio-Espinoza, J. Cesar; Brobeck, Matthew; Chen, Janet; Geluz, Matthew; Hess, Victoria; Quasem, Sophia; Sandhu, Nabjot; Salfati, Elias; Shacreaw, Maria; Way, George; Xie, Zhiyi; Slepnev, Vladimir; Klausner, Jeffrey D.

Benchmarking microbial growth rate predictions from metagenomes 对来自宏基因组的微生物生长速率预测进行基准测试

ISME JOURNAL

IF10

2020-09-16

OAAI

Long, Andrew M.; Hou, Shengwei; Ignacio-Espinoza, J. Cesar; Fuhrman, Jed A.

A network-based integrated framework for predicting virus-prokaryote interactions

genomics proteomics bioinformatics

IF2.8

2020-06-23

OAAI

Wang, Weili; Ren, Jie; Tang, Kujin; Dart, Emily; Ignacio-Espinoza, Julio Cesar; Fuhrman, Jed A.; Braun, Jonathan; Sun, Fengzhu; Ahlgren, Nathan A.

Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes 由时空浮游生物metatranscriptomes显示的动态海洋病毒感染和对光合过程的主要贡献

NATURE COMMUNICATIONS

IF15.7

2019-03-12

OAAI

Sieradzki, Ella T.; Ignacio-Espinoza, J. Cesar; Needham, David M.; Fichot, Erin B.; Fuhrman, Jed A.

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.在融化的多年冻土中活跃的全球Caldiserica相关门的发现和生态基因组背景，Candidatus Cryosericota phylum 11月，Ca。Cryosericia class 11月，Ca。Cryosericales ord.11月，Ca.冷冻器科fam。11月，包括四个物种Cryosericum septentrionale gen。11月sp。11月，Ca。C. hinesii sp.11月，Ca。C. odellii sp.11月，Ca。C. terrychapinii sp.11月

SYSTEMATIC AND APPLIED MICROBIOLOGY

IF4.2

2019-01-01

OAAI

Martinez, Miguel A.; Woodcroft, Ben J.; Espinoza, Julio C. Ignacio; Zayed, Ahmed A.; Singleton, Caitlin M.; Boyd, Joel A.; Li, Yueh-Fen; Purvine, Samuel; Maughan, Heather; Hodgkins, Suzanne B.; Anderson, Darya; Sederholm, Maya; Temperton, Ben; Bolduc, Benjamin; Saleska, Scott R.; Rich, Virginia I.; Crill, Patrick; Chanton, Jeff; Tyson, Gene W.; Varner, Ruth; Sullivan, Matt; Frolking, Steve; Li, Changsheng

A non-tailed twist in the viral tale

NATURE

IF48.5

2018-01-24

OAAI

Ignacio-Espinoza, Julio Cesar; Fuhrman, Jed A.

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer

BMC GENOMICS

IF3.7

2016-11-16

OAAI

Gregory, Ann C.; Solonenko, Sergei A.; Ignacio-Espinoza, J. Cesar; LaButti, Kurt; Copeland, Alex; Sudek, Sebastian; Maitland, Ashley; Chittick, Lauren; dos Santos, Filipa; Weitz, Joshua S.; Worden, Alexandra Z.; Woyke, Tanja; Sullivan, Matthew B.

Illuminating structural proteins in viral dark matter with metaproteomics 用元蛋白质组学照亮病毒暗物质中的结构蛋白

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2016-02-16

OAAI

Brum, Jennifer R.; Ignacio-Espinoza, J. Cesar; Kim, Eun-Hae; Trubl, Gareth; Jones, Robert M.; Roux, Simon; VerBerkmoes, Nathan C.; Rich, Virginia I.; Sullivan, Matthew B.

Closing the gaps on the viral photosystem-I psaDCAB gene organization

ENVIRONMENTAL MICROBIOLOGY

IF4

2015-10-14

OAAI

Roitman, Sheila; Flores-Uribe, Jose; Philosof, Alon; Knowles, Ben; Rohwer, Forest; Ignacio-Espinoza, J. Cesar; Sullivan, Matthew B.; Cornejo-Castillo, Francisco M.; Sanchez, Pablo; Acinas, Silvia G.; Dupont, Chris L.; Beja, Oded

The global virome: not as big as we thought?

CURRENT OPINION IN VIROLOGY

IF5.1

2013-10-01

PREAI

Ignacio-Espinoza, J. Cesar; Solonenko, Sergei A.; Sullivan, Matthew B.

Sequencing platform and library preparation choices impact viral metagenomes

BMC GENOMICS

IF3.7

2013-05-10

OAAI

Solonenko, Sergei A.; Ignacio-Espinoza, J. Cesar; Alberti, Adriana; Cruaud, Corinne; Hallam, Steven; Konstantinidis, Kostas; Tyson, Gene; Wincker, Patrick; Sullivan, Matthew B.

Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes

ENVIRONMENTAL MICROBIOLOGY

IF4

2012-02-20

108

PREAI

Ignacio-Espinoza, J. Cesar; Sullivan, Matthew B.

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

ENVIRONMENTAL MICROBIOLOGY

IF4

2010-11-03

290

OAAI

Sullivan, Matthew B.; Huang, Katherine H.; Ignacio-Espinoza, Julio C.; Berlin, Aaron M.; Kelly, Libusha; Weigele, Peter R.; DeFrancesco, Alicia S.; Kern, Suzanne E.; Thompson, Luke R.; Young, Sarah; Yandava, Chandri; Fu, Ross; Krastins, Bryan; Chase, Michael; Sarracino, David; Osburne, Marcia S.; Henn, Matthew R.; Chisholm, Sallie W.

研究方向