Dongbo Bu - Publications, H-index & Citations

Dongbo Bu

Chinese Academy of Sciences

24H指数

147论文数

2.6K被引数

收录论文 27

发表时间

GPMassSimulator: A Graphormer-Based Method for Glycopeptide MS/MS Spectra Prediction

ANALYTICAL CHEMISTRY

IF6.7

2025-12-01

PREAI

Ren, Yihui; Bu, Dongbo; Duan, Bo; Zhang, Chunming; Cong, Bin; Sun, Shiwei

Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning 通过端到端深度学习的准确且高效的系统发育推断

Molecular Biology and Evolution

IF5.3

2025-10-29

OAAI

Xinru Zhang; Shizhe Ding; Chungong Yu; Jianquan Zhao; Dongbo Bu

A survey on deep learning-based algorithms for the traveling salesman problem 基于深度学习的旅行商问题算法研究综述

FRONTIERS OF COMPUTER SCIENCE

IF4.6

2024-12-12

OAAI

Sui, Jingyan; Ding, Shizhe; Huang, Xulin; Yu, Yue; Liu, Ruizhi; Xia, Boyang; Ding, Zhenxin; Xu, Liming; Zhang, Haicang; Yu, Chungong; Bu, Dongbo

Cost-Effective DNA Storage System with DNA Movable Type 具有DNA可移动类型的具有成本效益的DNA存储系统

ADVANCED SCIENCE

IF14.1

2024-11-18

OAAI

Wang, Chenyang; Wei, Di; Wei, Zheng; Yang, Dongxin; Xing, Jing; Wang, Yunze; Wang, Xiaotong; Wang, Pei; Ma, Guannan; Zhang, Xinru; Li, Haolan; Tang, Chuan; Hou, Pengfei; Wang, Jie; Gao, Renjun; Xie, Guiqiu; Li, Cuidan; Ju, Yingjiao; Wang, Peihan; Yue, Liya; Zhao, Yongliang; Sheng, Yongjie; Xiao, Jingfa; Niu, Haitao; Xu, Sihong; Yang, Huaiyi; Liu, Di; Duan, Bo; Bu, Dongbo; Tan, Guangming; Chen, Fei

NIERT: Accurate Numerical Interpolation Through Unifying Scattered Data Representations Using Transformer Encoder

IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

IF10.4

2024-11-01

OAAI

Ding, Shizhe; Xia, Boyang; Ren, Milong; Bu, Dongbo

DMSS: An Attention-Based Deep Learning Model for High-Quality Mass Spectrometry Prediction

BIG DATA MINING AND ANALYTICS

IF6.2

2024-09-01

OAAI

Ren, Yihui; Wang, Yu; Han, Wenkai; Huang, Yikang; Hou, Xiaoyang; Zhang, Chunming; Bu, Dongbo; Gao, Xin; Sun, Shiwei

Accurate and robust protein sequence design with CarbonDesign 使用CarbonDesign进行准确而稳健的蛋白质序列设计

NATURE MACHINE INTELLIGENCE

IF23.9

2024-05-23

OAAI

Ren, Milong; Yu, Chungong; Bu, Dongbo; Zhang, Haicang

Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials 通过求解具有学习潜力的最小成本流来准确预测RNA二级结构，包括假结

COMMUNICATIONS BIOLOGY

IF5.1

2024-03-09

OAAI

Gong, Tiansu; Ju, Fusong; Bu, Dongbo

SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances SASA-Net: 一种空间感知的自我注意机制，用于直接从残基间距离构建蛋白质3D结构

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2023-11-01

PREAI

Gong, Tiansu; Ju, Fusong; Sun, Shiwei; Bu, Dongbo

Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 蛋白质结构预测: 挑战、进展和研究范式的转变

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2023-03-30

OAAI

Huang, Bin; Kong, Lupeng; Wang, Chao; Ju, Fusong; Zhang, Qi; Zhu, Jianwei; Gong, Tiansu; Zhang, Haicang; Yu, Chungong; Zheng, Wei-Mou; Bu, Dongbo

GIPS-Mix for Accurate Identification of Isomeric Components in Glycan Mixtures Using Intelligent Group-Opting Strategy

ANALYTICAL CHEMISTRY

IF6.7

2022-12-22

OAAI

Huang, Chuncui; Hou, Meijie; Yan, Jingyu; Wang, Hui; Wang, Yu; Cao, Cuiyan; Wang, Yaojun; Gao, Huanyu; Ma, Xinyue; Zheng, Yi; Bu, Dongbo; Chai, Wengang; Li, Yan; Sun, Shiwei

Microbiome Resilience and Health Implications for People in Half-Year Travel

FRONTIERS IN IMMUNOLOGY

IF5.9

2022-02-24

OAAI

Cheng, Mingyue; Liu, Hong; Han, Maozhen; Li, Shuai Cheng; Bu, Dongbo; Sun, Shiwei; Hu, Zhiqiang; Yang, Pengshuo; Wang, Rui; Liu, Yawen; Chen, Feng; Peng, Jianjun; Peng, Hong; Song, Hongxing; Xia, Yang; Chu, Liqun; Zhou, Quan; Guan, Feng; Wu, Jing; Tan, Guangming; Ning, Kang

HepParser: An Intelligent Software Program for Deciphering Low-Molecular-Weight Heparin Based on Mass Spectrometry

FRONTIERS IN CHEMISTRY

IF4.2

2021-09-09

OAAI

Wang, Hui; Wang, Yu; Hou, Meijie; Zhang, Chunming; Wang, Yaojun; Guo, Zhendong; Bu, Dongbo; Li, Yan; Huang, Chuncui; Sun, Shiwei

FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks

genomics proteomics bioinformatics

IF2.8

2021-06-22

OAAI

Chen, Hao; Shaw, Dipan; Bu, Dongbo; Jiang, Tao

CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction

NATURE COMMUNICATIONS

IF15.7

2021-05-05

OAAI

Ju, Fusong; Zhu, Jianwei; Shao, Bin; Kong, Lupeng; Liu, Tie-Yan; Zheng, Wei-Mou; Bu, Dongbo

Multistage mass spectrometry with intelligent precursor selection for N-glycan branching pattern analysis

CARBOHYDRATE POLYMERS

IF12.5

2020-06-01

PREAI

Huang, Chuncui; Wang, Hui; Bu, Dongbo; Zhou, Jinyu; Dong, Junchuan; Zhang, Jingwei; Gao, Huanyu; Wang, Yaojun; Chai, Wengang; Sun, Shiwei; Li, Yan

Constrained maximum weighted bipartite matching: a novel approach to radio broadcast scheduling

SCIENCE CHINA-INFORMATION SCIENCES

IF7.6

2019-05-07

PREAI

Wang, Shaojiang; Wu, Tianyong; Yao, Yuan; Bu, Dongbo; Cai, Shaowei

Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection

ANALYTICAL CHEMISTRY

IF6.7

2018-11-16

PREAI

Sun, Shiwei; Huang, Chuncui; Wang, Yaojun; Liu, Yaming; Zhang, Jingwei; Zhou, Jinyu; Gao, Feng; Yang, Fei; Chen, Runsheng; Mulloy, Barbara; Chai, Wengang; Li, Yan; Bu, Dongbo

Insights into the transmission of respiratory infectious diseases through empirical human contact networks

SCIENTIFIC REPORTS

IF3.9

2016-08-16

OAAI

Huang, Chunlin; Liu, Xingwu; Sun, Shiwei; Li, Shuai Cheng; Deng, Minghua; He, Guangxue; Zhang, Haicang; Wang, Chao; Zhou, Yang; Zhao, Yanlin; Bu, Dongbo

Parameterized BLOSUM Matrices for Protein Alignment

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2015-05-01

PREAI

Song, Dandan; Chen, Jiaxing; Chen, Guang; Li, Ning; Li, Jin; Fan, Jun; Bu, Dongbo; Li, Shuai Cheng

研究方向