Hera Vlamakis - Publications, H-index & Citations

Hera Vlamakis

Broad Institute of MIT and Harvard

72H指数

191论文数

3.1W被引数

收录论文 58

发表时间

Human immunodeficiency virus and antiretroviral therapies exert distinct influences across diverse gut microbiomes 人类免疫缺陷病毒和抗逆转录病毒疗法对多样化的肠道微生物群产生不同的影响

Nature Microbiology

IF19.4

2025-10-30

PREAI

Karolina S. Jabbar; Sambhawa Priya; Jiawu Xu; Upasana Das Adhikari; Gleb Pishchany; Ahmed T. M. Mohamed; Joachim Johansen; Kumar Thurimella; Cristin McCabe; Hera Vlamakis; Samson Okello; Toni M. Delorey; Alexander Lankowski; Mosepele Mosepele; Mark J. Siedner; Damian R. Plichta; Douglas S. Kwon; Ramnik J. Xavier

Assessing the microbiome of a poultry burger processing line: A combined approach using culturing techniques and metabarcoding

LWT-FOOD SCIENCE AND TECHNOLOGY

IF6.6

2025-02-01

OAAI

Merino, Natalia; Espina, Laura; Pagan, Elisa; Vlamakis, Hera; Grasa, Laura; Berdejo, Daniel; Pagan, Rafael; Garcia-Gonzalo, Diego

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease 综合注释优先考虑炎症性肠病中具有生物活性的代谢物

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2024-03-11

OAAI

Bhosle, Amrisha; Bae, Sena; Zhang, Yancong; Chun, Eunyoung; Avila-Pacheco, Julian; Geistlinger, Ludwig; Pishchany, Gleb; Glickman, Jonathan N.; Michaud, Monia; Waldron, Levi; Clish, Clary B.; Xavier, Ramnik J.; Vlamakis, Hera; Franzosa, Eric A.; Garrett, Wendy S.; Huttenhower, Curtis

Lectin-Seq: A method to profile lectin-microbe interactions in native communities

SCIENCE ADVANCES

IF12.5

2023-07-28

OAAI

McPherson, Robert L.; Isabella, Christine R.; Walker, Rebecca L.; Sergio, Dallis; Bae, Sunhee; Gaca, Tony; Raman, Smrithi; Nguyen, Le Thanh Tu; Wesener, Darryl A.; Halim, Melanie; Wuo, Michael G.; Dugan, Amanda; Kerby, Robert; Ghosh, Soumi; Rey, Federico E.; Dhennezel, Catherine; Pishchany, Gleb; Lensch, Valerie; Vlamakis, Hera; Alm, Eric J.; Xavier, Ramnik J.; Kiessling, Laura L.

Remodeling of colon plasma cell repertoire within ulcerative colitis patients

JOURNAL OF EXPERIMENTAL MEDICINE

IF10.6

2023-02-08

OAAI

Scheid, Johannes F.; Eraslan, Basak; Hudak, Andrew; Brown, Eric M.; Sergio, Dallis; Delorey, Toni M.; Phillips, Devan; Lefkovith, Ariel; Jess, Alison T.; Duck, Lennard W.; Elson, Charles O.; Vlamakis, Hera; Plichta, Damian R.; Deguine, Jacques; Ananthakrishnan, Ashwin N.; Graham, Daniel B.; Regev, Aviv; Xavier, Ramnik J.

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin 使用MMUPHin在荟萃分析的微生物群落和炎症性肠病中发现种群结构

GENOME BIOLOGY

IF9.4

2022-10-03

OAAI

Ma, Siyuan; Shungin, Dmitry; Mallick, Himel; Schirmer, Melanie; Nguyen, Long H.; Kolde, Raivo; Franzosa, Eric; Vlamakis, Hera; Xavier, Ramnik; Huttenhower, Curtis

The CD4+ T cell response to a commensal-derived epitope transitions from a tolerant to an inflammatory state in Crohn's disease

IMMUNITY

IF26.3

2022-10-01

OAAI

Pedersen, Thomas K.; Brown, Eric M.; Plichta, Damian R.; Johansen, Joachim; Twardus, Shaina W.; Delorey, Toni M.; Lau, Helena; Vlamakis, Hera; Moon, James J.; Xavier, Ramnik J.; Graham, Daniel B.

Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis

MICROBIOME

IF12.7

2022-09-23

OAAI

Martin, Victoria M.; Virkud, Yamini V.; Dahan, Ehud; Seay, Hannah L.; Itzkovits, Dvir; Vlamakis, Hera; Xavier, Ramnik; Shreffler, Wayne G.; Yuan, Qian; Yassour, Moran

Gut bacterial metabolites modulate endoplasmic reticulum stress

GENOME BIOLOGY

IF9.4

2021-10-15

OAAI

Ke, Xiaobo; You, Kwontae; Pichaud, Matthieu; Haiser, Henry J.; Graham, Daniel B.; Vlamakis, Hera; Porter, Jeffrey A.; Xavier, Ramnik J.

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations (vol 12, 4845, 2021)

NATURE COMMUNICATIONS

IF15.7

2021-09-29

OAAI

Strazar, Martin; Temba, Godfrey S.; Vlamakis, Hera; Kullaya, Vesla I.; Lyamuya, Furaha; Mmbaga, Blandina T.; Joosten, Leo A. B.; van der Ven, Andre J. A. M.; Netea, Mihai G.; de Mast, Quirijn; Xavier, Ramnik J.

The influence of the gut microbiome on BCG-induced trained immunity

GENOME BIOLOGY

IF9.4

2021-09-22

OAAI

Strazar, Martin; Mourits, Vera P.; Koeken, Valerie A. C. M.; de Bree, L. Charlotte J.; Moorlag, Simone J. C. F. M.; Joosten, Leo A. B.; van Crevel, Reinout; Vlamakis, Hera; Netea, Mihai G.; Xavier, Ramnik J.

Cytokine-specific autoantibodies shape the gut microbiome in autoimmune polyendocrine syndrome type 1

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

IF11.2

2021-09-01

OAAI

Petersen, Anders O.; Jokinen, Martta; Plichta, Damian R.; Liebisch, Gerhard; Gronwald, Wolfram; Dettmer, Katja; Oefner, Peter J.; Vlamakis, Hera; Chung, Daniel C.; Ranki, Annamari; Xavier, Ramnik J.

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations (vol 12, 4845, 2021)

NATURE COMMUNICATIONS

IF15.7

2021-08-24

OAAI

Untargeted Plasma Metabolomics and Gut Microbiome Profiling Provide Novel Insights into the Regulation of Platelet Reactivity in Healthy Individuals

THROMBOSIS AND HAEMOSTASIS

IF4.3

2021-08-13

PREAI

Vadaq, Nadira; Schirmer, Melanie; Tunjungputri, Rahajeng N.; Vlamakis, Hera; Chiriac, Cecilia; Ardiansyah, Edwin; Gasem, M. Hussein; Joosten, Leo A. B.; de Groot, Philip G.; Xavier, Ramnik J.; Netea, Mihai G.; van der Ven, Andre J.; de Mast, Quirijn

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

NATURE COMMUNICATIONS

IF15.7

2021-08-11

OAAI

Modulating T Follicular Cells In Vivo Enhances Antigen-Specific Humoral Immunity

JOURNAL OF IMMUNOLOGY

IF3.4

2021-06-01

OAAI

Pagan, Jose D.; Vlamakis, Hera; Gaca, Anthony; Xavier, Ramnik J.; Anthony, Robert M.

Structure-based protein function prediction using graph convolutional networks 基于图卷积网络的基于结构的蛋白质功能预测

NATURE COMMUNICATIONS

IF15.7

2021-05-26

373

OAAI

Gligorijevic, Vladimir; Renfrew, P. Douglas; Kosciolek, Tomasz; Leman, Julia Koehler; Berenberg, Daniel; Vatanen, Tommi; Chandler, Chris; Taylor, Bryn C.; Fisk, Ian M.; Vlamakis, Hera; Xavier, Ramnik J.; Knight, Rob; Cho, Kyunghyun; Bonneau, Richard

Capsular polysaccharide correlates with immune response to the human gut microbe Ruminococcus gnavus 荚膜多糖与对人类肠道微生物的免疫反应相关

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-05-10

OAAI

Henke, Matthew T.; Brown, Eric M.; Cassilly, Chelsi D.; Vlamakis, Hera; Xavier, Ramnik J.; Clardy, Jon

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach 单叠氮丙啶测序方法不能定量反映整个微生物群落的活力

MICROBIOME

IF12.7

2021-01-21

OAAI

Wang, Ya; Yan, Yan; Thompson, Kelsey N.; Bae, Sena; Accorsi, Emma K.; Zhang, Yancong; Shen, Jiaxian; Vlamakis, Hera; Hartmann, Erica M.; Huttenhower, Curtis

Plasmalogen Biosynthesis by Anaerobic Bacteria: Identification of a Two-Gene Operon Responsible for Plasmalogen Production in Clostridium perfringens

ACS CHEMICAL BIOLOGY

IF3.8

2020-12-22

OAAI

Jackson, David R.; Cassilly, Chelsi D.; Plichta, Damian R.; Vlamakis, Hera; Liu, Hualan; Melville, Stephen B.; Xavier, Ramnik J.; Clardy, Jon

研究方向