Sandrine Dudoit - Publications, H-index & Citations

Sandrine Dudoit

University of California, Berkeley

64H指数

260论文数

4.7W被引数

收录论文 44

发表时间

A latent activated olfactory stem cell state revealed by single-cell transcriptomic and epigenomic profiling 单细胞转录组学和表观基因组学分析揭示了一种潜伏激活的嗅觉干细胞状态

Stem Cell Reports

IF5.1

2026-01-08

OAAI

Koen Van den Berge; Dana Bakalar; Hsin-Jung Chou; Divya Kunda; Davide Risso; Kelly Street; Elizabeth Purdom; Sandrine Dudoit; John Ngai; Whitney Heavner

A nonparametric framework for treatment effect modifier discovery in high dimensions 用于高维治疗效果修饰符发现的非参数框架

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

IF3.6

2024-08-21

OAAI

Boileau, Philippe; Leng, Ning; Hejazi, Nima S.; van der Laan, Mark; Dudoit, Sandrine

Trajectory inference across multiple conditions with condiments

NATURE COMMUNICATIONS

IF15.7

2024-01-27

OAAI

de Bezieux, Hector Roux; van den Berge, Koen; Street, Kelly; Dudoit, Sandrine

HSA Adductomics Reveals Sex Differences in NHL Incidence and Possible Involvement of Microbial Translocation HSA内收组学揭示了NHL发病率的性别差异以及微生物易位的可能参与

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

IF3.4

2023-07-06

OAAI

Grigoryan, Hasmik; Imani, Partow; Sacerdote, Carlotta; Masala, Giovanna; Grioni, Sara; Tumino, Rosario; Chiodini, Paolo; Dudoit, Sandrine; Vineis, Paolo; Rappaport, Stephen M.

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

CELL REPORTS METHODS

IF4.5

2022-11-01

OAAI

Van den Berge, Koen; Chou, Hsin-Jung; de Bezieux, Hector Roux; Street, Kelly; Risso, Davide; Ngai, John; Dudoit, Sandrine

Extending the HSA-Cys34-Adductomics Pipeline to Modifications at Lys525

CHEMICAL RESEARCH IN TOXICOLOGY

IF3.8

2021-11-17

PREAI

Grigoryan, Hasmik; Imani, Partow; Dudoit, Sandrine; Rappaport, Stephen M.

Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes

CELL REPORTS

IF6.9

2021-11-01

OAAI

Kinisu, Martin; Choi, Yong Jin; Cattoglio, Claudia; Liu, Ke; de Bezieux, Hector Roux; Valbuena, Raeline; Pum, Nicole; Dudoit, Sandrine; Huang, Haiyan; Xuan, Zhenyu; Kim, Sang Yong; He, Lin

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

SCIENCE ADVANCES

IF12.5

2020-07-31

836

OAAI

Brann, David H.; Tsukahara, Tatsuya; Weinreb, Caleb; Lipovsek, Marcela; Van den Berge, Koen; Gong, Boying; Chance, Rebecca; Macaulay, Iain C.; Chou, Hsin-Jung; Fletcher, Russell B.; Das, Diya; Street, Kelly; de Bezieux, Hector Roux; Choi, Yoon-Gi; Risso, Davide; Dudoit, Sandrine; Purdom, Elizabeth; Mill, Jonathan; Hachem, Ralph Abi; Matsunami, Hiroaki; Logan, Darren W.; Goldstein, Bradley J.; Grubb, Matthew S.; Ngai, John; Datta, Sandeep Robert

Breast cancer risk in U.S-born Latina women: potential role of reactive electrophiles

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

IF3.4

2020-06-01

PREAI

Serrano-Gomez, Silvia J.; Schiffman, Courtney; Grigoryan, Hasmik; Carlsson, Henrik; Dudoit, Sandrine; John, Esther M.; Rappaport, Stephen M.; Fejerman, Laura

Trajectory-based differential expression analysis for single-cell sequencing data 基于轨迹的单细胞测序数据差异表达分析

NATURE COMMUNICATIONS

IF15.7

2020-03-05

343

OAAI

Van den Berge, Koen; Roux de Bezieux, Hector; Street, Kelly; Saelens, Wouter; Cannoodt, Robrecht; Saeys, Yvan; Dudoit, Sandrine; Clement, Lieven

Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology

CANCER RESEARCH

IF16.6

2019-12-02

OAAI

Grigoryan, Hasmik; Schiffman, Courtney; Gunter, Marc J.; Naccarati, Alessio; Polidoro, Silvia; Dagnino, Sonia; Dudoit, Sandrine; Vineis, Paolo; Rappaport, Stephen M.

Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition

CANCER LETTERS

IF10.1

2019-06-01

OAAI

Petrick, Lauren M.; Schiffman, Courtney; Edmands, William M. B.; Yano, Yukiko; Perttula, Kelsi; Whitehead, Todd; Metayer, Catherine; Wheelock, Craig E.; Arora, Manish; Grigoryan, Hasmik; Carlsson, Henrik; Dudoit, Sandrine; Rappaport, Stephen M.

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

CELL SYSTEMS

IF7.7

2019-04-01

OAAI

Cole, Michael B.; Risso, Davide; Wagner, Allon; DeTomaso, David; Ngai, John; Purdom, Elizabeth; Dudoit, Sandrine; Yosef, Nir

Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots

ANALYTICAL AND BIOANALYTICAL CHEMISTRY

IF3.8

2019-02-19

OAAI

Yano, Yukiko; Grigoryan, Hasmik; Schiffman, Courtney; Edmonds, William; Petrick, Lauren; Hall, Katie; Whitehead, Todd; Metayer, Catherine; Dudoit, Sandrine; Rappaport, Stephen

A general and flexible method for signal extraction from single-cell RNA-seq data (vol 9, 284, 2018)

NATURE COMMUNICATIONS

IF15.7

2019-02-04

OAAI

Risso, Davide; Perraudeau, Fanny; Gribkova, Svetlana; Dudoit, Sandrine; Vert, Jean-Philippe

Untargeted lipidomic features associated with colorectal cancer in a prospective cohort 前瞻性队列中与结直肠癌相关的非靶向脂质组学特征

BMC CANCER

IF3.4

2018-10-19

OAAI

Perttula, Kelsi; Schiffman, Courtney; Edmands, William M. B.; Petrick, Lauren; Grigoryan, Hasmik; Cai, Xiaoming; Gunter, Marc J.; Naccarati, Alessio; Polidoro, Silvia; Dudoit, Sandrine; Vineis, Paolo; Rappaport, Stephen M.

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics 弹弓: 单细胞转录组学的细胞谱系和伪时间推断

BMC GENOMICS

IF3.7

2018-06-19

1.3K

OAAI

Street, Kelly; Risso, Davide; Fletcher, Russell B.; Das, Diya; Ngai, John; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

GENOME BIOLOGY

IF9.4

2018-02-26

OAAI

Van den Berge, Koen; Perraudeau, Fanny; Soneson, Charlotte; Love, Michael I.; Risso, Davide; Vert, Jean-Philippe; Robinson, Mark D.; Dudoit, Sandrine; Clement, Lieven

A general and flexible method for signal extraction from single-cell RNA-seq data 从单细胞rna-seq数据中提取信号的通用且灵活的方法

NATURE COMMUNICATIONS

IF15.7

2018-01-18

452

OAAI

Risso, Davide; Perraudeau, Fanny; Gribkova, Svetlana; Dudoit, Sandrine; Vert, Jean-Philippe

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

CELL STEM CELL

IF20.4

2017-12-01

OAAI

Gadye, Levi; Das, Diya; Sanchez, Michael A.; Street, Kelly; Baudhuin, Ariane; Wagner, Allon; Cole, Michael B.; Choi, Yoon Gi; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine; Risso, Davide; Ngai, John; Fletcher, Russell B.

研究方向