未登录 Benchmarking challenging small variants with linked and long reads 具有链接和长读取的具有挑战性的小变体的基准测试 Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; Khan, Ziad; Farek, Jesse; Mahmoud, Medhat; Stankovic, Ana; Kovacevic, Vladimir; Yoo, Byunggil; Miller, Neil; Rosenfeld, Jeffrey A.; Ni, Bohan; Zarate, Samantha; Kirsche, Melanie; Aganezov, Sergey; Schatz, Michael C.; Narzisi, Giuseppe; Byrska-Bishop, Marta; Clarke, Wayne; Evani, Uday S.; Markello, Charles; Shafin, Kishwar; Zhou, Xin; Sidow, Arend; Bansal, Vikas; Ebert, Peter; Marschall, Tobias; Lansdorp, Peter; Hanlon, Vincent; Mattsson, Carl-Adam; Barrio, Alvaro Martinez; Fiddes, Ian T.; Xiao, Chunlin; Fungtammasan, Arkarachai; Chin, Chen-Shan; Wenger, Aaron M.; Rowell, William J.; Sedlazeck, Fritz J.; Carroll, Andrew; Salit, Marc; Zook, Justin M. 分享 收藏
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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions Butler, Daniel; Mozsary, Christopher; Meydan, Cem; Foox, Jonathan; Rosiene, Joel; Shaiber, Alon; Danko, David; Afshinnekoo, Ebrahim; MacKay, Matthew; Sedlazeck, Fritz J.; Ivanov, Nikolay A.; Sierra, Maria; Pohle, Diana; Zietz, Michael; Gisladottir, Undina; Ramlall, Vijendra; Sholle, Evan T.; Schenck, Edward J.; Westover, Craig D.; Hassan, Ciaran; Ryon, Krista; Young, Benjamin; Bhattacharya, Chandrima; Ng, Dianna L.; Granados, Andrea C.; Santos, Yale A.; Servellita, Venice; Federman, Scot; Ruggiero, Phyllis; Fungtammasan, Arkarachai; Chin, Chen-Shan; Pearson, Nathaniel M.; Langhorst, Bradley W.; Tanner, Nathan A.; Kim, Youngmi; Reeves, Jason W.; Hether, Tyler D.; Warren, Sarah E.; Bailey, Michael; Gawrys, Justyna; Meleshko, Dmitry; Xu, Dong; Couto-Rodriguez, Mara; Nagy-Szakal, Dorottya; Barrows, Joseph; Wells, Heather; O'Hara, Niamh B.; Rosenfeld, Jeffrey A.; Chen, Ying; Steel, Peter A. D.; Shemesh, Amos J.; Xiang, Jenny; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Iftner, Angelika; Bezdan, Daniela; Sanchez, Elizabeth; Campion, Thomas R., Jr.; Sipley, John; Cong, Lin; Craney, Arryn; Velu, Priya; Melnick, Ari M.; Shapira, Sagi; Hajirasouliha, Iman; Borczuk, Alain; Iftner, Thomas; Salvatore, Mirella; Loda, Massimo; Westblade, Lars F.; Cushing, Melissa; Wu, Shixiu; Levy, Shawn; Chiu, Charles; Schwartz, Robert E.; Tatonetti, Nicholas; Rennert, Hanna; Imielinski, Marcin; Mason, Christopher E. 分享 收藏
A robust benchmark for detection of germline large deletions and insertions (Jun, 10.1038/s41587-020-0538-8, 2020) 用于检测种系大缺失和插入的稳健基准 (6月，10.1038/s41587-020-0538-8，2020) Zook, Justin M.; Hansen, Nancy F.; Olson, Nathan D.; Chapman, Lesley; Mullikin, James C.; Xiao, Chunlin; Sherry, Stephen; Koren, Sergey; Phillippy, Adam M.; Boutros, Paul C.; Sahraeian, Sayed Mohammad E.; Huang, Vincent; Rouette, Alexandre; Alexander, Noah; Mason, Christopher E.; Hajirasouliha, Iman; Ricketts, Camir; Lee, Joyce; Tearle, Rick; Fiddes, Ian T.; Barrio, Alvaro Martinez; Wala, Jeremiah; Carroll, Andrew; Ghaffari, Noushin; Rodriguez, Oscar L.; Bashir, Ali; Jackman, Shaun; Farrell, John J.; Wenger, Aaron M.; Alkan, Can; Soylev, Arda; Schatz, Michael C.; Garg, Shilpa; Church, George; Marschall, Tobias; Chen, Ken; Fan, Xian; English, Adam C.; Rosenfeld, Jeffrey A.; Zhou, Weichen; Mills, Ryan E.; Sage, Jay M.; Davis, Jennifer R.; Kaiser, Michael D.; Oliver, John S.; Catalano, Anthony P.; Chaisson, Mark J. P.; Spies, Noah; Sedlazeck, Fritz J.; Salit, Marc 分享 收藏
A robust benchmark for detection of germline large deletions and insertions 用于检测种系大缺失和插入的可靠基准 Zook, Justin M.; Hansen, Nancy F.; Olson, Nathan D.; Chapman, Lesley; Mullikin, James C.; Xiao, Chunlin; Sherry, Stephen; Koren, Sergey; Phillippy, Adam M.; Boutros, Paul C.; Sahraeian, Sayed Mohammad E.; Huang, Vincent; Rouette, Alexandre; Alexander, Noah; Mason, Christopher E.; Hajirasouliha, Iman; Ricketts, Camir; Lee, Joyce; Tearle, Rick; Fiddes, Ian T.; Barrio, Alvaro Martinez; Wala, Jeremiah; Carroll, Andrew; Ghaffari, Noushin; Rodriguez, Oscar L.; Bashir, Ali; Jackman, Shaun; Farrell, John J.; Wenger, Aaron M.; Alkan, Can; Soylev, Arda; Schatz, Michael C.; Garg, Shilpa; Church, George; Marschall, Tobias; Chen, Ken; Fan, Xian; English, Adam C.; Rosenfeld, Jeffrey A.; Zhou, Weichen; Mills, Ryan E.; Sage, Jay M.; Davis, Jennifer R.; Kaiser, Michael D.; Oliver, John S.; Catalano, Anthony P.; Chaisson, Mark J. P.; Spies, Noah; Sedlazeck, Fritz J.; Salit, Marc 分享 收藏
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Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata Oppenheim, Sara; Cao, Xiaolong; Rueppel, Olav; Krongdang, Sasiprapa; Phokasem, Patcharin; DeSalle, Rob; Goodwin, Sara; Xing, Jinchuan; Chantawannakul, Panuwan; Rosenfeld, Jeffrey A. 分享 收藏
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Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius Rosenfeld, Jeffrey A.; Reeves, Darryl; Brugler, Mercer R.; Narechania, Apurva; Simon, Sabrina; Durrett, Russell; Foox, Jonathan; Shianna, Kevin; Schatz, Michael C.; Gandara, Jorge; Afshinnekoo, Ebrahim; Lam, Ernest T.; Hastie, Alex R.; Chan, Saki; Cao, Han; Saghbini, Michael; Kentsis, Alex; Planet, Paul J.; Kholodovych, Vladyslav; Tessler, Michael; Baker, Richard; DeSalle, Rob; Sorkin, Louis N.; Kolokotronis, Sergios-Orestis; Siddall, Mark E.; Amato, George; Mason, Christopher E. 分享 收藏
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Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study (vol 32, pg 915, 2014) 在ABRF下一代测序研究中使用rna-seq进行转录组分析的多平台评估 (第32卷，915页，2014) Li, Sheng; Tighe, Scott W.; Nicolet, Charles M.; Grove, Deborah; Levy, Shawn; Farmerie, William; Viale, Agnes; Wright, Chris; Schweitzer, Peter A.; Gao, Yuan; Kim, Dewey; Boland, Joe; Hicks, Belynda; Kim, Ryan; Chhangawala, Sagar; Jafari, Nadereh; Raghavachari, Nalini; Gandara, Jorge; Garcia-Reyero, Natalia; Hendrickson, Cynthia; Roberson, David; Rosenfeld, Jeffrey; Smith, Todd; Underwood, Jason G.; Wang, May; Zumbo, Paul; Baldwin, Don A.; Grills, George S.; Mason, Christopher E. 分享 收藏
Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study Li, Sheng; Tighe, Scull W.; Nicolet, Charles M.; Grove, Deborah; Levy, Shawn; Farmerie, William; Viale, Agnes; Wright, Chris; Schweitzer, Peter A.; Gao, Yuan; Kim, Dewey; Boland, Joe; Hicks, Belynda; Kim, Ryan; Chhangawala, Sagar; Jafari, Nadereh; Raghavachari, Nalini; Gandara, Jorge; Garcia-Reyero, Natalia; Hendrickson, Cynthia; Roberson, David; Rosenfeldr, Jeffrey; Smith, Todd; Underwood, Jason G.; Wang, May; Zumbo, Paul; Baldwin, Don A.; Grills, George S.; Mason, Christopher E. 分享 收藏
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