Luay Nakhleh - Publications, H-index & Citations

Luay Nakhleh

Rice University

54H指数

212论文数

9.2K被引数

收录论文 47

发表时间

Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal Single-Cell Copy Number Profiles 从纵向单细胞拷贝数谱推断癌症进化的系统发育树

COMPARATIVE GENOMICS, RECOMB-CG 2025

IF0

2026-01-01

PREAI

Liu, Yushu; Nakhleh, Luay

Accurate integration of single-cell DNA and RNA for analyzing intratumor heterogeneity using MaCroDNA

NATURE COMMUNICATIONS

IF15.7

2023-12-13

OAAI

Edrisi, Mohammadamin; Huang, Xiru; Ogilvie, Huw A.; Nakhleh, Luay

Correcting Gene Trees to be More Like Species Trees Frequently Increases Topological Error

GENOME BIOLOGY AND EVOLUTION

IF2.8

2023-05-27

OAAI

Yan, Zhi; Ogilvie, Huw A.; Nakhleh, Luay

Comparing inference under the multispecies coalescent with and without recombination 有和没有重组的多物种合并下的比较推断

MOLECULAR PHYLOGENETICS AND EVOLUTION

IF3.6

2023-04-01

OAAI

Yan, Zhi; Ogilvie, Huw A.; Nakhleh, Luay

Current progress and open challenges for applying deep learning across the biosciences 在生物科学中应用深度学习的当前进展和开放挑战

NATURE COMMUNICATIONS

IF15.7

2022-04-01

138

OAAI

Sapoval, Nicolae; Aghazadeh, Amirali; Nute, Michael G.; Antunes, Dinler A.; Balaji, Advait; Baraniuk, Richard; Barberan, C. J.; Dannenfelser, Ruth; Dun, Chen; Edrisi, Mohammadamin; Elworth, R. A. Leo; Kille, Bryce; Kyrillidis, Anastasios; Nakhleh, Luay; Wolfe, Cameron R.; Yan, Zhi; Yao, Vicky; Treangen, Todd J.

Multispecies Coalescent: Theory and Applications in Phylogenetics

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 52, 2021

IF0

2021-11-02

PREAI

Mirarab, Siavash; Nakhleh, Luay; Warnow, Tandy

Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes

SYSTEMATIC BIOLOGY

IF5.7

2021-10-04

OAAI

Yan, Zhi; Cao, Zhen; Liu, Yushu; Ogilvie, Huw A.; Nakhleh, Luay

Variational inference using approximate likelihood under the coalescent with recombination

GENOME RESEARCH

IF5.5

2021-08-23

OAAI

Liu, Xinhao; Ogilvie, Huw A.; Nakhleh, Luay

Phylogenomic assessment of the role of hybridization and introgression in trait evolution

PLOS GENETICS

IF3.7

2021-08-18

OAAI

Wang, Yaxuan; Cao, Zhen; Ogilvie, Huw A.; Nakhleh, Luay

Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs

SYSTEMATIC BIOLOGY

IF5.7

2021-07-10

OAAI

Yan, Zhi; Smith, Megan L.; Du, Peng; Hahn, Matthew W.; Nakhleh, Luay

Methods for copy number aberration detection from single-cell DNA-sequencing data 从单细胞DNA测序数据检测拷贝数畸变的方法

GENOME BIOLOGY

IF9.4

2020-08-17

OAAI

Mallory, Xian F.; Edrisi, Mohammadamin; Navin, Nicholas; Nakhleh, Luay

Integrated likelihood for phylogenomics under a no-common-mechanism model 无共同机制模型下系统基因组学的综合可能性

BMC GENOMICS

IF3.7

2020-04-16

OAAI

Tidwell, Hunter; Nakhleh, Luay

Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2020-02-20

OAAI

Wang, Yaxuan; Ogilvie, Huw A.; Nakhleh, Luay

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data

GENOME RESEARCH

IF5.5

2019-10-18

OAAI

Zafar, Hamim; Navin, Nicholas; Chen, Ken; Nakhleh, Luay

Comments on the model parameters in SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models

GENOME BIOLOGY

IF9.4

2019-05-16

OAAI

Zafar, Hamim; Tzen, Anthony; Navin, Nicholas; Chen, Ken; Nakhleh, Luay

Matrilysin/MMP-7 Cleavage of Perlecan/HSPG2 Complexed with Semaphorin 3A Supports FAK-Mediated Stromal Invasion by Prostate Cancer Cells

SCIENTIFIC REPORTS

IF3.9

2018-05-08

OAAI

Grindel, Brian J.; Martinez, Jerahme R.; Tellman, Tristen V.; Harrington, Daniel A.; Zafar, Hamim; Nakhleh, Luay; Chung, Leland W.; Farach-Carson, Mary C.

Inferring Phylogenetic Networks Using PhyloNet

SYSTEMATIC BIOLOGY

IF5.7

2018-03-05

243

OAAI

Wen, Dingqiao; Yu, Yun; Zhu, Jiafan; Nakhleh, Luay

Stranger in a strange land: the experiences of immigrant researchers

GENOME BIOLOGY

IF9.4

2017-12-15

OAAI