Timothy J. Dallman - Publications, H-index & Citations

Timothy J. Dallman

Utrecht University

50H指数

203论文数

10.0K被引数

收录论文 93

发表时间

Exploring differences across pangenome-graph representations using Escherichia coli O157:H7 as a model 利用大肠杆菌O157:H7作为模型探索泛基因组图表示方法间的差异

Genomics

IF3

2026-08-23

OAAI

Peilin Liu; Kaixin Hu; Lapo Mughini-Gras; Aldert L. Zomer; Michael S.M. Brouwer; Timothy J. Dallman; Julian A. Paganini

Predicting clinical outcome of Escherichia coli O157:H7 infections using explainable machine learning 利用可解释机器学习预测大肠杆菌O157:H7感染的临床结局

MICROBIAL GENOMICS

IF4

2025-12-01

PREAI

Paganini, Julian A.; Khatun, Suniya; McAteer, Sean; Cowley, Lauren; Greig, David R.; Gally, David L.; Jenkins, Claire; Dallman, Timothy J.

Attributable sources of the five most prevalent non-typhoidal Salmonella serovars across ten European countries 欧洲十个国家中五种最常见的非伤寒沙门氏菌血清型的归因来源

Journal of Infection

IF11.9

2025-10-13

OAAI

Gijs Teunis; Timothy J. Dallman; Magdalena Zając; Magdalena Skarżyńska; Liljana Petrovska; Angela Pista; Leonor Silveira; Lurdes Clemente; Amandine Thépault; Laetitia Bonifait; Annaëlle Kerouanton; Marianne Chemaly; Julio Alvarez; Robert Söderlund; Eva Møller Nielsen; Marie Chattaway; Kaye Burgess; William Byrne; Maaike van den Beld; Antoni P.A. Hendrickx; Eelco Franz; Sara Pires; Tine Hald; Lapo Mughini-Gras

Detecting wing fractures in chickens using deep learning, photographs and computed tomography scanning 使用深度学习、照片和计算机断层扫描检测鸡的翅膀骨折

POULTRY SCIENCE

IF4.2

2025-06-14

OAAI

Libera, Kacper; Schut, Dirk; Kritsi, Effrosyni; van Steijn, Louis; Dallman, Timothy; Lipman, Len

Genomic epidemiology of Salmonella Enteritidis human infections in the Netherlands, 2019 to 2023 2019年至2023年荷兰沙门氏菌肠炎亚种人类感染的基因组流行病学

MICROBIAL GENOMICS

IF4

2025-04-23

OAAI

Pinedo, Linda E. Chaname; Franz, Eelco; Dallman, Timothy J.; Coipan, Claudia E.; Wolthuis, Roxanne; Veldman, Kees T.; Mughini-Gras, Lapo; Pijnacker, Roan; van den Beld, Maaike J. C.

Source attribution of Listeria monocytogenes in the Netherlands

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

IF5.2

2025-01-01

OAAI

Mughini-Gras, Lapo; Paganini, Julian A.; Guo, Ruoshui; Coipan, Claudia E.; Friesema, Ingrid H. M.; van Hoek, Angela H. A. M.; van den Beld, Maaike; Kuiling, Sjoerd; Bergval, Indra; Wullings, Bart; van der Voort, Menno; Franz, Eelco; Dallman, Timothy J.

A One Health Perspective on Salmonella enterica Serovar Infantis, an Emerging Human Multidrug-Resistant Pathogen

EMERGING INFECTIOUS DISEASES

IF6.6

2024-04-01

OAAI

Mattock, Jennifer; Chattaway, Marie Anne; Hartman, Hassan; Dallman, Timothy J.; Smith, Anthony M.; Keddy, Karen; Petrovska, Liljana; Manners, Emma J.; Duze, Sanelisiwe T.; Smouse, Shannon; Tau, Nomsa; Timme, Ruth; Baker, Dave J.; Mather, Alison E.; Wain, John; Langridge, Gemma C.

Development and validation of a random forest algorithm for source attribution of animal and human Salmonella Typhimurium and monophasic variants of S. Typhimurium isolates in England and Wales utilising whole genome sequencing data

FRONTIERS IN MICROBIOLOGY

IF4.5

2024-03-12

OAAI

Guzinski, Jaromir; Tang, Yue; Chattaway, Marie Anne; Dallman, Timothy J.; Petrovska, Liljana

Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

SCIENTIFIC REPORTS

IF3.9

2024-03-09

OAAI

Greig, David R.; Do Nascimento, Vivienne; Gally, David L.; Gharbia, Saheer E.; Dallman, Timothy J.; Jenkins, Claire

Inspection of chicken wings and legs for animal welfare monitoring using X-ray computed tomography, visual examination, and histopathology

POULTRY SCIENCE

IF4.2

2024-03-01

OAAI

Libera, Kacper; Valadian, Roozbeh; Vararattanavech, Patiharn; Dasari, Sri Nithya; Dallman, Timothy J.; Weerts, Erik; Lipman, Len

Analysis of Escherichia coli O157 strains in cattle and humans between Scotland and England & Wales: implications for human health

MICROBIAL GENOMICS

IF4

2023-09-06

OAAI

Chase-Topping, Margo; Dallman, Timothy J.; Allison, Lesley; Lupolova, Nadejda; Matthews, Louise; Mitchell, Sonia; Banks, Christopher J.; Prentice, Jamie; Brown, Helen; Tongue, Sue; Henry, Madeleine; Evans, Judith; Gunn, George; Hoyle, Deborah; McNeilly, Tom N.; Fitzgerald, Stephen; Smith-Palmer, Alison; Shaaban, Sharif; Holmes, Anne; Hanson, Mary; Woolhouse, Mark; Didelot, Xavier; Jenkins, Claire; Gally, David L.

Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli

MICROBIOLOGY SPECTRUM

IF3.8

2023-08-17

OAAI

Dallman, Timothy J.; Neuert, Saskia; Turienzo, Cristina Fernandez; Berin, Michelle; Richardson, Emily; Fuentes-Utrilla, Pablo; Loman, Nicholas; Gharbia, Saheer; Jenkins, Claire; Behrens, Ron H.; Godbole, Gauri; Brown, Michael

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning

ELIFE

IF0

2023-04-12

OAAI

Bayliss, Sion C.; Locke, Rebecca K.; Jenkins, Claire; Chattaway, Marie Anne; Dallman, Timothy J.; Cowley, Lauren A.; Cooper, Ben S.

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

MICROBIAL GENOMICS

IF4

2022-11-24

OAAI

Charity, Oliver J.; Acton, Luke; Bawn, Matt; Tassinari, Eleonora; Thilliez, Gaetan; Chattaway, Marie A.; Dallman, Timothy J.; Petrovska, Liljana; Kingsley, Robert A.

Emergence and global spread of Listeria monocytogenes main clinical clonal complex 单核细胞增生李斯特菌主要临床克隆复合体的出现和全球传播

SCIENCE ADVANCES

IF12.5

2021-12-03

OAAI

Moura, Alexandra; Lefrancq, Noemie; Wirth, Thierry; Leclercq, Alexandre; Borges, Vitor; Gilpin, Brent; Dallman, Timothy J.; Frey, Joachim; Franz, Eelco; Nielsen, Eva M.; Thomas, Juno; Pightling, Arthur; Howden, Benjamin P.; Tarr, Cheryl L.; Gerner-Smidt, Peter; Cauchemez, Simon; Salje, Henrik; Brisse, Sylvain; Lecuit, Marc

Genome structural variation in Escherichia coli O157:H7

MICROBIAL GENOMICS

IF4

2021-11-30

OAAI

Fitzgerald, Stephen F.; Lupolova, Nadejda; Shaaban, Sharif; Dallman, Timothy J.; Greig, David; Allison, Lesley; Tongue, Sue C.; Evans, Judith; Henry, Madeleine K.; McNeilly, Tom N.; Bono, James L.; Gally, David L.

Characterization of a pESI- like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales

MICROBIAL GENOMICS

IF4

2021-11-01

OAAI

Lee, Winnie W. Y.; Mattock, Jennifer; Greig, David R.; Langridge, Gemma C.; Baker, David; Bloomfield, Samuel; Mather, Alison E.; Wain, John R.; Edwards, Andrew M.; Hartman, Hassan; Dallman, Timothy J.; Chattaway, Marie A.; Nair, Satheesh

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

NATURE COMMUNICATIONS

IF15.7

2021-05-11

OAAI

Hawkey, Jane; Paranagama, Kalani; Baker, Kate S.; Bengtsson, Rebecca J.; Weill, Francois-Xavier; Thomson, Nicholas R.; Baker, Stephen; Cerdeira, Louise; Iqbal, Zamin; Hunt, Martin; Ingle, Danielle J.; Dallman, Timothy J.; Jenkins, Claire; Williamson, Deborah A.; Holt, Kathryn E.

Accessory Genome Dynamics and Structural Variation of Shigella from Persistent Infections

MBIO

IF4.7

2021-04-27

OAAI

Bengtsson, Rebecca J.; Dallman, Timothy J.; Allen, Hester; De Silva, P. Malaka; Stenhouse, George; Pulford, Caisey V.; Bennett, Rebecca J.; Jenkins, Claire; Baker, Kate S.

Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential

COMMUNICATIONS BIOLOGY

IF5.1

2021-04-23

OAAI

Kirkwood, Mark; Vohra, Prerna; Bawn, Matt; Thilliez, Gaetan; Pye, Hannah; Tanner, Jennifer; Chintoan-Uta, Cosmin; Branchu, Priscilla; Petrovska, Liljana; Dallman, Timothy; Hall, Neil; Stevens, Mark P.; Kingsley, Robert A.

研究方向