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Olga Vitek

Northeastern University

47H指数
154论文数
1.1W被引数
收录论文 64
发表时间
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MSstatsResponse: Semi-parametric statistical model enhances detection of drug-protein interactions in chemoproteomics experimentsMSstatsResponse：半参数统计模型增强化学蛋白质组学实验中药物-蛋白质相互作用的检测
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2026-08-12
err0
errOAAI
errSarah Szvetecz; Devon Kohler; Joel D. Federspiel; S. Denise Field; Pierre Jean-Beltran; Robert J. Seward; Hyunsuk Suh; Liang Xue; Olga Vitek
err分享
err收藏
spatialstein: An Open-Source Workflow for Annotation, Deconvolution, and Spatially Aware Segmentation of Mass Spectrometry Imaging Data
errANALYTICAL CHEMISTRY
IF6.7
err2026-01-01
err0
PREAI
errCiach, Michal Aleksander; Guo, Dan; Bemis, Kylie Ariel; Valkenborg, Dirk; Vitek, Olga; Gambin, Anna
err分享
err收藏
MSstatsTMT improves accuracy of thermal proteome profiling by trading off temperature treatments and biological replicatesMSstatsTMT通过平衡温度处理和生物重复来提高热蛋白组分析（Thermal Proteome Profiling, TPP）的准确性。
errMolecular & Cellular Proteomics
IF5.5
err2025-05-01
err0
errOAAI
errAmanda M. Figueroa-Navedo; Rohan Kapre; Tushita Gupta; Yingrong Xu; Clifford G. Phaneuf; Pierre M. Jean Beltran; Liang Xue; Alexander R. Ivanov; Olga Vitek
err分享
err收藏
Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge超越蛋白质列表: 在不断发展的科学知识的背景下，蛋白质组学研究的AI辅助解释
errNATURE METHODS
IF32.1
err2024-08-09
err1
PREAI
errGyori, Benjamin M.; Vitek, Olga
err分享
err收藏
An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing
errNATURE PROTOCOLS
IF16
err2024-05-20
err0
PREAI
errKohler, Devon; Staniak, Mateusz; Yu, Fengchao; Nesvizhskii, Alexey I.; Vitek, Olga
err分享
err收藏
Cardinal v.3: a versatile open-source software for mass spectrometry imaging analysisCardinal v.3: 用于质谱成像分析的通用开源软件
errNATURE METHODS
IF32.1
err2023-11-23
err6
errOAAI
errBemis, Kylie Ariel; Foll, Melanie Christine; Guo, Dan; Lakkimsetty, Sai Srikanth; Vitek, Olga
err分享
err收藏
A computational framework for the inference of protein complex remodeling from whole-proteome measurements从全蛋白质组测量推断蛋白质复合物重塑的计算框架
errNATURE METHODS
IF32.1
err2023-09-25
err3
errOAAI
errBuljan, Marija; Banaei-Esfahani, Amir; Blattmann, Peter; Meier-Abt, Fabienne; Shao, Wenguang; Vitek, Olga; Tang, Hua; Aebersold, Ruedi
err分享
err收藏
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-04-05
err37
errOAAI
errKohler, Devon; Staniak, Mateusz; Tsai, Tsung-Heng; Huang, Ting; Shulman, Nicholas; Bernhardt, Oliver M.; MacLean, Brendan X.; Nesvizhskii, Alexey I.; Reiter, Lukas; Sabido, Eduard; Choi, Meena; Vitek, Olga
err分享
err收藏
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications (Dec, 10.1038/s41596-022-00771-x, 2022)
errNATURE PROTOCOLS
IF16
err2023-01-18
err0
errOAAI
errMalinovska, Liliana; Cappelletti, Valentina; Kohler, Devon; Piazza, Ilaria; Tsai, Tsung-Heng; Pepelnjak, Monika; Stalder, Patrick; Doerig, Christian; Sesterhenn, Fabian; Elsaesser, Franziska; Kralickova, Lucie; Beaton, Nigel; Reiter, Lukas; de Souza, Natalie; Vitek, Olga; Picotti, Paola
err分享
err收藏
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-01-09
err10
PREAI
errKohler, Devon; Kaza, Maanasa; Pasi, Cristina; Huang, Ting; Staniak, Mateusz; Mohandas, Dhaval; Sabido, Eduard; Choi, Meena; Vitek, Olga
err分享
err收藏
MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2023-01-01
err11
errOAAI
errKohler, Devon; Tsai, Tsung-Heng; Verschueren, Erik; Huang, Ting; Hinkle, Trent; Phu, Lilian; Choi, Meena; Vitek, Olga
err分享
err收藏
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications
errNATURE PROTOCOLS
IF16
err2022-12-16
err37
PREAI
errMalinovska, Liliana; Cappelletti, Valentina; Kohler, Devon; Piazza, Ilaria; Tsai, Tsung-Heng; Pepelnjak, Monika; Stalder, Patrick; Doerig, Christian; Sesterhenn, Fabian; Elsaesser, Franziska; Kralickova, Lucie; Beaton, Nigel; Reiter, Lukas; de Souza, Natalie; Vitek, Olga; Picotti, Paola
err分享
err收藏
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2021-12-17
err6
errOAAI
errMarsh, Alexandra N.; Sharma, Vagisha; Mani, Surya K.; Vitek, Olga; MacCoss, Michael J.; MacLean, Brendan X.
err分享
err收藏
Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response
errELIFE
IF0
err2021-06-04
err10
errOAAI
errMaculins, Timurs; Verschueren, Erik; Hinkle, Trent; Choi, Meena; Chang, Patrick; Chalouni, Cecile; Rao, Shilpa; Kwon, Youngsu; Lim, Junghyun; Katakam, Anand Kumar; Kunz, Ryan C.; Erickson, Brian K.; Huang, Ting; Tsai, Tsung-Heng; Vitek, Olga; Reichelt, Mike; Senbabaoglu, Yasin; Mckenzie, Brent; Rohde, John R.; Dikic, Ivan; Kirkpatrick, Donald S.; Murthy, Aditya
err分享
err收藏
Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis
errIEEE TRANSACTIONS ON BIG DATA
IF5.7
err2021-03-01
err15
errOAAI
errZucker, Jeremy; Paneri, Kaushal; Mohammad-Taheri, Sara; Bhargava, Somya; Kolambkar, Pallavi; Bakker, Craig; Teuton, Jeremy; Hoyt, Charles Tapley; Oxford, Kristie; Ness, Robert; Vitek, Olga
err分享
err收藏
MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2020-10-01
err99
errOAAI
errHuang, Ting; Choi, Meena; Tzouros, Manuel; Golling, Sabrina; Pandya, Nikhil Janak; Banfai, Balazs; Dunkley, Tom; Vitek, Olga
err分享
err收藏
Verification of a Blood-Based Targeted Proteomics Signature for Malignant Pleural Mesothelioma
errCANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
IF3.4
err2020-10-01
err4
errOAAI
errCerciello, Ferdinando; Choi, Meena; Sinicropi-Yao, Sara L.; Lomeo, Katie; Amann, Joseph M.; Felley-Bosco, Emanuela; Stahel, Rolf A.; Robinson, Bruce W. S.; Creaney, Jenette; Pass, Harvey, I; Vitek, Olga; Carbone, David P.
err分享
err收藏
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
errNATURE METHODS
IF32.1
err2020-09-14
err74
errOAAI
errChoi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M.; Huttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Mueller, Maik; Goetze, Sandra; Pavlou, Maria; Verschueren, Erik; Wollscheid, Bernd; Nesvizhskii, Alexey I.; Reiter, Lukas; Dunkley, Tom; Sabido, Eduard; Bandeira, Nuno; Vitek, Olga
err分享
err收藏
Selection of Features with Consistent Profiles Improves Relative Protein Quantification in Mass Spectrometry Experiments
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2020-06-01
err22
errOAAI
errTsai, Tsung-Heng; Choi, Meena; Banfai, Balazs; Liu, Yansheng; MacLean, Brendan X.; Dunkley, Tom; Vitek, Olga
err分享
err收藏
Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2020-02-01
err42
errOAAI
errHuang, Ting; Bruderer, Roland; Muntel, Jan; Xuan, Yue; Vitek, Olga; Reiter, Lukas
err分享
err收藏

研究方向

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