Dmitry Kobak - Publications, H-index & Citations

Dmitry Kobak

swiss federal institutes of technology domain

26H指数

102论文数

5.6K被引数

收录论文 17

发表时间

Compound models and Pearson residuals for single-cell RNA-seq data without UMIs 复合模型和皮尔逊残差用于无UMIs的单细胞RNA测序数据

Genome Biology

IF9.4

2026-06-27

OAAI

Jan Lause; Christoph Ziegenhain; Leonard Hartmanis; Philipp Berens; Dmitry Kobak

Representation learning of single-cell RNA-seq data 单细胞RNA测序数据的表示学习

RNA

IF5

2026-04-01

PREAI

Ahlmann-Eltze, Constantin; Barkmann, Florian; Lause, Jan; Boeva, Valentina; Kobak, Dmitry

Combined statistical-biophysical modeling links ion channel genes to physiology of cortical neuron types 结合统计-生物物理建模将离子通道基因与皮层神经元类型的生理学联系起来

Patterns

IF7.4

2025-08-05

OAAI

Yves Bernaerts; Michael Deistler; Pedro J. Gonçalves; Jonas Beck; Marcel Stimberg; Federico Scala; Andreas S. Tolias; Jakob H. Macke; Dmitry Kobak; Philipp Berens

Delving into LLM-assisted writing in biomedical publications through excess vocabulary 通过过多的词汇深入研究生物医学出版物中的LLM辅助写作

Science Advances

IF12.5

2025-07-04

OAAI

Dmitry Kobak; Rita González-Márquez; Emőke-Ágnes Horvát; Jan Lause

Meet the authors: Rita Gonzalez-Marquez, Philipp Berens, and Dmitry Kobak

PATTERNS

IF7.4

2024-06-01

OAAI

Gonzalez-Marquez, Rita; Berens, Philipp; Kobak, Dmitry

The landscape of biomedical research

PATTERNS

IF7.4

2024-06-01

OAAI

Gonzalez-Marquez, Rita; Schmidt, Luca; Schmidt, Benjamin M.; Berens, Philipp; Kobak, Dmitry

Distinct organization of two cortico-cortical feedback pathways

NATURE COMMUNICATIONS

IF15.7

2022-10-27

OAAI

Shen, Shan; Jiang, Xiaolong; Scala, Federico; Fu, Jiakun; Fahey, Paul; Kobak, Dmitry; Tan, Zhenghuan; Zhou, Na; Reimer, Jacob; Sinz, Fabian; Tolias, Andreas S.

Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data

GENOME BIOLOGY

IF9.4

2021-09-06

OAAI

Lause, Jan; Berens, Philipp; Kobak, Dmitry

Tracking excess mortality across countries during the COVID-19 pandemic with the World Mortality Dataset

ELIFE

IF0

2021-06-30

122

OAAI

Karlinsky, Ariel; Kobak, Dmitry

Initialization is critical for preserving global data structure in both t-SNE and UMAP

NATURE BIOTECHNOLOGY

IF41.7

2021-02-01

173

OAAI

Kobak, Dmitry; Linderman, George C.

Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex

ELIFE

IF0

2020-03-05

OAAI

Cadwell, Cathryn R.; Scala, Federico; Fahey, Paul G.; Kobak, Dmitry; Mulherkar, Shalaka; Sinz, Fabian H.; Papadopoulos, Stelios; Tan, Zheng H.; Johnsson, Per; Hartmanis, Leonard; Li, Shuang; Cotton, Ronald J.; Tolias, Kimberley F.; Sandberg, Rickard; Berens, Philipp; Jiang, Xiaolong; Tolias, Andreas Savas

The art of using t-SNE for single-cell transcriptomics

NATURE COMMUNICATIONS

IF15.7

2019-11-28

569

OAAI

Kobak, Dmitry; Berens, Philipp

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas (vol 10, 4174, 2019)

NATURE COMMUNICATIONS

IF15.7

2019-11-04

OAAI

Scala, Federico; Kobak, Dmitry; Shan, Shen; Bernaerts, Yves; Laturnus, Sophie; Cadwell, Cathryn Rene; Hartmanis, Leonard; Froudarakis, Emmanouil; Castro, Jesus Ramon; Tan, Zheng Huan; Papadopoulos, Stelios; Patel, Saumil Surendra; Sandberg, Rickard; Berens, Philipp; Jiang, Xiaolong; Tolias, Andreas Savas

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

NATURE COMMUNICATIONS

IF15.7

2019-09-13

OAAI

State-dependent geometry of population activity in rat auditory cortex

ELIFE

IF0

2019-04-10

OAAI

Kobak, Dmitry; Pardo-Vazquez, Jose L.; Valente, Mafalda; Machens, Christian K.; Renart, Alfonso

Distributed and Mixed Information in Monosynaptic Inputs to Dopamine Neurons

NEURON

IF15

2016-09-01

168

OAAI

Tian, Ju; Huang, Ryan; Cohen, Jeremiah Y.; Osakada, Fumitaka; Kobak, Dmitry; Machens, Christian K.; Callaway, Edward M.; Uchida, Naoshige; Watabe-Uchida, Mitsuko

Demixed principal component analysis of neural population data

ELIFE

IF0

2016-04-12

367

OAAI

Kobak, Dmitry; Brendel, Wieland; Constantinidis, Christos; Feierstein, Claudia E.; Kepecs, Adam; Mainen, Zachary F.; Qi, Xue-Lian; Romo, Ranulfo; Uchida, Naoshige; Machens, Christian K.

研究方向