Frank DiMaio - Publications & Citations

Frank DiMaio

University of Washington

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收录论文 27

发表时间

3.1 Å structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids 酵母RNA聚合酶II延伸复合物的3.1 Å 结构停滞在使用链霉亲和素亲和网格解决的环丁烷嘧啶二聚体病变上

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2019-09-01

OAAI

Lahiri, Indrajit; Xu, Jun; Han, Bong Gyoon; Oh, Juntaek; Wang, Dong; DiMaio, Frank; Leschziner, Andres E.

Rosetta Tools for cryoEM Modeling

BIOPHYSICAL JOURNAL

IF3.1

2019-02-01

OAAI

DiMaio, Frank

cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2018-09-01

OAAI

Cianfrocco, Michael A.; Lahiri, Indrajit; DiMaio, Frank; Leschziner, Andres E.

RosettaES: a sampling strategy enabling automated interpretation of difficult cryo-EM maps

NATURE METHODS

IF32.1

2017-06-19

107

OAAI

Frenz, Brandon; Walls, Alexandra C.; Egelman, Edward H.; Veesler, David; DiMaio, Frank

CryoEM structure of a prokaryotic cyclic nucleotide-gated ion channel

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2017-04-10

OAAI

James, Zachary M.; Borst, Andrew J.; Haitin, Yoni; Frenz, Brandon; DiMaio, Frank; Zagotta, William N.; Veesler, David

Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2016-11-07

381

OAAI

Park, Hahnbeom; Bradley, Philip; Greisen, Per, Jr.; Liu, Yuan; Mulligan, Vikram Khipple; Kim, David E.; Baker, David; DiMaio, Frank

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2016-09-12

323

OAAI

Walls, Alexandra C.; Tortorici, M. Alejandra; Frenz, Brandon; Snijder, Joost; Li, Wentao; Rey, Felix A.; DiMaio, Frank; Bosch, Berend-Jan; Veesler, David

Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2016-02-24

OAAI

Ovchinnikov, Sergey; Kim, David E.; Wang, Ray Yu-Ruei; Liu, Yuan; DiMaio, Frank; Baker, David

Precise assembly of complex beta sheet topologies from de novo designed building blocks 从从头设计的构建块精确组装复杂的beta片拓扑

ELIFE

IF0

2015-12-09

OAAI

King, Indigo Chris; Gleixner, James; Doyle, Lindsey; Kuzin, Alexandre; Hunt, John F.; Xiao, Rong; Montelione, Gaetano T.; Stoddard, Barry L.; DiMaio, Frank; Baker, David

CASP11 refinement experiments with ROSETTA

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2015-08-14

OAAI

Park, Hahnbeom; DiMaio, Frank; Baker, David

Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy 低温电子显微镜揭示的过氧化物酶体Pex1/Pex6 ATPase复合物的独特双环结构

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2015-07-13

OAAI

Blok, Neil B.; Tan, Dongyan; Wang, Ray Yu-Ruei; Penczek, Pawel A.; Baker, David; DiMaio, Frank; Rapoport, Tom A.; Walz, Thomas

Designing Two-Dimensional Protein Arrays through Fusion of Multimers and Interface Mutations

NANO LETTERS

IF9.1

2015-05-26

PREAI

Matthaei, James F.; DiMaio, Frank; Richards, Jeffrey J.; Pozzo, Lilo D.; Baker, David; Baneyx, Francois

De novo protein structure determination from near-atomic-resolution cryo-EM maps

NATURE METHODS

IF32.1

2015-02-23

149

OAAI

Wang, Ray Yu-Ruei; Kudryashev, Mikhail; Li, Xueming; Egelman, Edward H.; Basler, Marek; Cheng, Yifan; Baker, David; DiMaio, Frank

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement

NATURE METHODS

IF32.1

2015-02-23

282

OAAI

DiMaio, Frank; Song, Yifan; Li, Xueming; Brunner, Matthias J.; Xu, Chunfu; Conticello, Vincent; Egelman, Edward; Marlovits, Thomas C.; Cheng, Yifan; Baker, David

Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2015-01-28

221

OAAI

O'Meara, Matthew J.; Leaver-Fay, Andrew; Tyka, Michael D.; Stein, Amelie; Houlihan, Kevin; DiMaio, Frank; Bradley, Philip; Kortemme, Tanja; Baker, David; Snoeyink, Jack; Kuhlman, Brian

Crystal structure of the transport unit of the autotransporter adhesin involved in diffuse adherence from Escherichia coli

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2014-07-01

PREAI

Gawarzewski, Iris; DiMaio, Frank; Winterer, Elisa; Tschapek, Britta; Smits, Sander H. J.; Jose, Joachim; Schmitt, Lutz

Crystal structure analysis of EstA from Arthrobacter sp Rue61a-an insight into catalytic promiscuity

FEBS LETTERS

IF3

2014-03-05