Minkyung Baek - Publications, H-index & Citations

Minkyung Baek

Seoul National University

34H指数

127论文数

1.3W被引数

收录论文 29

发表时间

Predicting protein-protein interactions in the human proteome 预测人类蛋白质组中的蛋白质-蛋白质相互作用

Science

IF45.8

2025-09-25

PREAI

Jing Zhang; Ian R. Humphreys; Jimin Pei; Jinuk Kim; Chulwon Choi; Rongqing Yuan; Jesse Durham; Siqi Liu; Hee-Jung Choi; Minkyung Baek; David Baker; Qian Cong

Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm 使用Seq2Symm对蛋白质同源寡聚体对称性进行快速而准确的预测

NATURE COMMUNICATIONS

IF15.7

2025-02-27

OAAI

Kshirsagar, Meghana; Meller, Artur; Humphreys, Ian R.; Xu, Yixi; Horvitz, Eric; Berger, Bonnie; Bowman, Gregory R.; Ferres, Juan Lavista; Baker, David; Baek, Minkyung

Deep learning methods for proteome-scale interaction prediction

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2025-02-01

PREAI

Yoon, Min Su; Bae, Byunghyun; Kim, Kunhee; Park, Hahnbeom; Baek, Minkyung

Democratizing protein language models with parameter-efficient fine-tuning 通过参数有效的微调使蛋白质语言模型民主化

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-06-20

OAAI

Sledzieski, Samuel; Kshirsagar, Meghana; Baek, Minkyung; Dodhia, Rahul; Ferres, Juan Lavista; Berger, Bonnie

Protein Ensemble Generation Through Variational Autoencoder Latent Space Sampling

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2024-03-28

OAAI

Mansoor, Sanaa; Baek, Minkyung; Park, Hahnbeom; Lee, Gyu Rie; Baker, David

Editorial: Structural modeling and computational analyses of immune system molecules

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-09-05

OAAI

Antunes, Dinler A.; Schoeder, Clara T.; Baek, Minkyung; Donadi, Eduardo A.

Protein-protein interactions in the Mla lipid transport system probed by computational structure prediction and deep mutational scanning

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2023-06-01

OAAI

Macrae, Mark R.; Puvanendran, Dhenesh; Haase, Max A. B.; Coudray, Nicolas; Kolich, Ljuvica; Lam, Cherry; Baek, Minkyung; Bhabha, Gira; Ekiert, Damian C.

Improving de novo protein binder design with deep learning 利用深度学习改进从头蛋白质结合剂设计

NATURE COMMUNICATIONS

IF15.7

2023-05-06

OAAI

Bennett, Nathaniel R.; Coventry, Brian; Goreshnik, Inna; Huang, Buwei; Allen, Aza; Vafeados, Dionne; Peng, Ying Po; Dauparas, Justas; Baek, Minkyung; Stewart, Lance; DiMaio, Frank; De Munck, Steven; Savvides, Savvas N.; Baker, David

Peptide-binding specificity prediction using fine-tuned protein structure prediction networks

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-02-21

OAAI

Motmaen, Amir; Dauparas, Justas; Baek, Minkyung; Abedi, Mohamad H.; Baker, David; Bradley, Philip

The φPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice

NATURE COMMUNICATIONS

IF15.7

2023-02-18

OAAI

Nieweglowska, Eliza S.; Brilot, Axel F.; Mendez-Moran, Melissa; Kokontis, Claire; Baek, Minkyung; Li, Junrui; Cheng, Yifan; Baker, David; Bondy-Denomy, Joseph; Agard, David A.

Deep learning and protein structure modeling

NATURE METHODS

IF32.1

2022-01-11

PREAI

Baek, Minkyung; Baker, David

Structure of the phosphoinositide 3-kinase (PI3K) p110γ-p101 complex reveals molecular mechanism of GPCR activation

SCIENCE ADVANCES

IF12.5

2021-08-27

OAAI

Rathinaswamy, Manoj K.; Dalwadi, Udit; Fleming, Kaelin D.; Adams, Carson; Stariha, Jordan T. B.; Pardon, Els; Baek, Minkyung; Vadas, Oscar; DiMaio, Frank; Steyaert, Jan; Hansen, Scott D.; Yip, Calvin K.; Burke, John E.

Protein oligomer modeling guided by predicted interchain contacts in CASP14

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2021-08-23

OAAI

Baek, Minkyung; Anishchenko, Ivan; Park, Hahnbeom; Humphreys, Ian R.; Baker, David

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2021-08-17

OAAI

Anishchenko, Ivan; Baek, Minkyung; Park, Hahnbeom; Hiranuma, Naozumi; Kim, David E.; Dauparas, Justas; Mansoor, Sanaa; Humphreys, Ian R.; Baker, David

GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking

NUCLEIC ACIDS RESEARCH

IF13.1

2021-05-28

OAAI

Park, Taeyong; Won, Jonghun; Baek, Minkyung; Seok, Chaok

Improved protein structure refinement guided by deep learning based accuracy estimation

NATURE COMMUNICATIONS

IF15.7

2021-02-26

150

OAAI

Hiranuma, Naozumi; Park, Hahnbeom; Baek, Minkyung; Anishchenko, Ivan; Dauparas, Justas; Baker, David

Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2021-02-12

OAAI

Park, Hahnbeom; Zhou, Guangfeng; Baek, Minkyung; Baker, David; DiMaio, Frank

Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-12-10

PREAI

Park, Taeyong; Woo, Hyeonuk; Baek, Minkyung; Yang, Jinsol; Seok, Chaok

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-10-25

OAAI

Lensink, Marc F.; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A. G.; Gerguri, Tereza; Bates, Paul A.; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran-Ran; Xu, Xi-Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaplewski, Cezary; Lubecka, Emilia; Lipska, Agnieszka; Krupa, Pawel; Mozolewska, Magdalena; Golon, Lukasz; Samsonov, Sergey; Liwo, Adam; Crivelli, Silvia; Pages, Guillaume; Karasikov, Mikhail; Kadukova, Maria; Yan, Yumeng; Huang, Sheng-You; Rosell, Mireia; Rodriguez-Lumbreras, Luis A.; Romero-Durana, Miguel; Diaz-Bueno, Lucia; Fernandez-Recio, Juan; Christoffer, Charles; Terashi, Genki; Shin, Woong-Hee; Aderinwale, Tunde; Maddhuri Venkata Subraman, Sai Raghavendra; Kihara, Daisuke; Kozakov, Dima; Vajda, Sandor; Porter, Kathryn; Padhorny, Dzmitry; Desta, Israel; Beglov, Dmitri; Ignatov, Mikhail; Kotelnikov, Sergey; Moal, Iain H.; Ritchie, David W.; de Beauchene, Isaure Chauvot; Maigret, Bernard; Devignes, Marie-Dominique; Echartea, Maria E. Ruiz; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Cao, Yue; Shen, Yang; Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok; Braitbard, Merav; Bitton, Lirane; Scheidman-Duhovny, Dina; Dapkunas, Justas; Olechnovic, Kliment; Venclovas, Ceslovas; Kundrotas, Petras J.; Belkin, Saveliy; Chakravarty, Devlina; Badal, Varsha D.; Vakser, Ilya A.; Vreven, Thom; Vangaveti, Sweta; Borrman, Tyler; Weng, Zhiping; Guest, Johnathan D.; Gowthaman, Ragul; Pierce, Brian G.; Xu, Xianjin; Duan, Rui; Qiu, Liming; Hou, Jie; Merideth, Benjamin Ryan; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Koukos, Panos I.; Roel-Touris, Jorge; Ambrosetti, Francesco; Geng, Cunliang; Schaarschmidt, Jorg; Trellet, Mikael E.; Melquiond, Adrien S. J.; Xue, Li; Jimenez-Garcia, Brian; van Noort, Charlotte W.; Honorato, Rodrigo V.; Bonvin, Alexandre M. J. J.; Wodak, Shoshana J.

Prediction of protein oligomer structures using GALAXY in CASP13

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-10-09

PREAI

Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok

研究方向