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The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation Hadzhiev, Yavor; Wheatley, Lucy; Cooper, Ledean; Ansaloni, Federico; Whalley, Celina; Chen, Zhelin; Finaurini, Sara; Gustincich, Stefano; Sanges, Remo; Burgess, Shawn; Beggs, Andrew; Mueller, Ferenc 分享 收藏
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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements Baranasic, Damir; Hortenhuber, Matthias; Balwierz, Piotr J.; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Varnai, Csilla; Hadzhiev, Yavor; Jimenez-Gonzalez, Ada; Li, Nan; Wragg, Joseph; D'Orazio, Fabio M.; Relic, Dorde; Pachkov, Mikhail; Diaz, Noelia; Hernandez-Rodriguez, Benjamin; Chen, Zelin; Stoiber, Marcus; Dong, Michael; Stevens, Irene; Ross, Samuel E.; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C.; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R.; Acemel, Rafael D.; Naranjo, Silvia; Lapinski, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M.; Winata, Cecilia; van Eeden, Freek; Vaquerizas, Juan M.; Luis Gomez-Skarmeta, Jose; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren; van Nimwegen, Erik; Westerfield, Monte; Wardle, Fiona C.; Daub, Carsten O.; Lenhard, Boris; Muller, Ferenc 分享 收藏
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Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization D'Orazio, Fabio M.; Balwierz, Piotr J.; Gonzalez, Ada Jimenez; Guo, Yixuan; Hernandez-Rodriguez, Benjamin; Wheatley, Lucy; Jasiulewicz, Aleksandra; Hadzhiev, Yavor; Vaquerizas, Juan M.; Cairns, Bradley; Lenhard, Boris; Mueller, Ferenc 分享 收藏
A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates Shen, Dan; Song, Chengyi; Miskey, Csaba; Chan, Shuheng; Guan, Zhongxia; Sang, Yatong; Wang, Yali; Chen, Cai; Wang, Xiaoyan; Muller, Ferenc; Ivics, Zoltan; Gao, Bo 分享 收藏
TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage Yu, Changwei; Cvetesic, Nevena; Hisler, Vincent; Gupta, Kapil; Ye, Tao; Gazdag, Emese; Negroni, Luc; Hajkova, Petra; Berger, Imre; Lenhard, Boris; Mueller, Ferenc; Vincent, Stephane D.; Tora, Laszlo 分享 收藏
Functional annotation of human long noncoding RNAs via molecular phenotyping (vol 30, pg 1060, 2020) Ramilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Christopher J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Muller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero 分享 收藏
Functional annotation of human long noncoding RNAs via molecular phenotyping Ramilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Chris J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Mueller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero 分享 收藏
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Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing Nepal, Chirag; Hadzhiev, Yavor; Balwierz, Piotr; Tarifeno-Saldivia, Estefania; Cardenas, Ryan; Wragg, Joseph W.; Suzuki, Ana-Maria; Carninci, Piero; Peers, Bernard; Lenhard, Boris; Andersen, Jesper B.; Muller, Ferenc 分享 收藏
A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation Hadzhiev, Yavor; Qureshi, Haseeb K.; Wheatley, Lucy; Cooper, Ledean; Jasiulewicz, Aleksandra; Nguyen, Huy Van; Wragg, Joseph W.; Poovathumkadavil, Divyasree; Conic, Sascha; Bajan, Sarah; Sik, Attila; Hutvagner, Gyorgy; Tora, Laszlo; Gambus, Agnieszka; Fossey, John S.; Mueller, Ferenc 分享 收藏
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Glucocorticoid deficiency causes transcriptional and post-transcriptional reprogramming of glutamine metabolism Weger, Meltem; Weger, Benjamin D.; Goerling, Benjamin; Poschet, Gernot; Yildiz, Melek; Hell, Ruediger; Luy, Burkhard; Akcay, Teoman; Guran, Tulay; Dickmeis, Thomas; Mueller, Ferenc; Krone, Nils 分享 收藏
Genetic Disruption of 21-Hydroxylase in Zebrafish Causes Interrenal Hyperplasia Eachus, Helen; Zaucker, Andreas; Oakes, James A.; Griffin, Aliesha; Weger, Meltem; Guran, Tulay; Taylor, Angela; Harris, Abigail; Greenfield, Andy; Quanson, Jonathan L.; Storbeck, Karl-Heinz; Cunliffe, Vincent T.; Muller, Ferenc; Krone, Nils 分享 收藏
The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome Basu, Swaraj; Hadzhiev, Yavor; Petrosino, Giuseppe; Nepal, Chirag; Gehrig, Jochen; Armant, Olivier; Ferg, Marco; Strahle, Uwe; Sanges, Remo; Mueller, Ferenc 分享 收藏
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