Dan Cullen - Publications, H-index & Citations

Dan Cullen

joint bioenergy institute - jbei

39H指数

116论文数

1.7W被引数

收录论文 30

发表时间

RETRACTION: Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (Retraction of Vol 84, art no E00991-18, 2018)

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-07-27

OAAI

Wu, Baojun; Gaskell, Jill; Held, Benjamin W.; Toapanta, Cristina; Thu Vuong; Ahrendt, Steven; Lipzen, Anna; Zhang, Jiwei; Schilling, Jonathan S.; Master, Emma; Grigoriev, Igor V.; Blanchette, Robert A.; Cullen, Dan; Hibbett, David S.

RETRACTION: Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (Retraction of Vol 87, art no E0033021, 2021)

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-07-27

OAAI

Wu, Baojun; Gaskell, Jill; Held, Benjamin W.; Toapanta, Cristina; Vuong, Thu V.; Ahrendt, Steven; Lipzen, Anna; Zhang, Jiwei; Schilling, Jonathan S.; Master, Emma; Grigoriev, Igor V.; Blanchette, Robert A.; Cullen, Dan; Hibbett, David S.

Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus

SCIENTIFIC REPORTS

IF3.9

2020-12-16

OAAI

Hori, Chiaki; Takata, Naoki; Lam, Pui Ying; Tobimatsu, Yuki; Nagano, Soichiro; Mortimer, Jenny C.; Cullen, Dan

Multi-omit Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2018-10-15

OAAI

Hori, Chiaki; Gaskell, Jill; Cullen, Dan; Sabat, Grzegorz; Stewart, Philip E.; Lail, Kathleen; Peng, Yi; Barry, Kerrie; Grigoriev, Igor V.; Kohler, Annegret; Fauchery, Laure; Martin, Francis; Zeiner, Carolyn A.; Bhatnagar, Jennifer M.

RETRACTED: Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (Retracted article. See vol. 87, 2021)

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2018-08-15

OAAI

Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2016-11-10

OAAI

Nagy, Laszlo G.; Riley, Robert; Bergmann, Philip J.; Krizsan, Krisztina; Martin, Francis M.; Grigoriev, Igor V.; Cullen, Dan; Hibbett, David S.

Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2016-07-15

OAAI

Skyba, Oleksandr; Cullen, Dan; Douglas, Carl J.; Mansfield, Shawn D.

Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2016-07-01

OAAI

Gaskell, Jill; Blanchette, Robert A.; Stewart, Philip E.; BonDurant, Sandra Splinter; Adams, Marie; Sabat, Grzegorz; Kersten, Phil; Cullen, Dan

Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2015-11-15

OAAI

Korripally, Premsagar; Hunt, Christopher G.; Houtman, Carl J.; Jones, Don C.; Kitin, Peter J.; Cullen, Dan; Hammel, Kenneth E.

Influence of Populus Genotype on Gene Expression by the Wood Decay Fungus Phanerochaete chrysosporium

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2014-09-15

OAAI

Gaskell, Jill; Marty, Amber; Mozuch, Michael; Kersten, Philip J.; BonDurant, Sandra Splinter; Sabat, Grzegorz; Azarpira, Ali; Ralph, John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Cullen, Dan

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-06-23

598

OAAI

Riley, Robert; Salamov, Asaf A.; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitrios; Held, Benjamin W.; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Otillar, Robert; Lindquist, Erika A.; Sun, Hui; LaButti, Kurt M.; Schmutz, Jeremy; Jabbour, Dina; Luo, Hong; Baker, Scott E.; Pisabarro, Antonio G.; Walton, Jonathan D.; Blanchette, Robert A.; Henrissat, Bernard; Martin, Francis; Cullen, Dan; Hibbett, David S.; Grigoriev, Igor V.

Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporiopsis subvermispora during Growth on Aspen Wood Reveal This Organism's Strategy for Degrading Lignocellulose

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2014-04-01

OAAI

Hori, Chiaki; Gaskell, Jill; Igarashi, Kiyohiko; Kersten, Phil; Mozuch, Michael; Samejima, Masahiro; Cullen, Dan

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2013-02-06

OAAI

Morin, Emmanuelle; Kohler, Annegret; Baker, Adam R.; Foulongne-Oriol, Marie; Lombard, Vincent; Nagy, Laszlo G.; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Brun, Annick; Aerts, Andrea L.; Bailey, Andrew M.; Billette, Christophe; Coutinho, Pedro M.; Deakin, Greg; Doddapaneni, Harshavardhan; Floudas, Dimitrios; Grimwood, Jane; Hilden, Kristiina; Kuees, Ursula; LaButti, Kurt M.; Lapidus, Alla; Lindquist, Erika A.; Lucas, Susan M.; Murat, Claude; Riley, Robert W.; Salamov, Asaf A.; Schmutz, Jeremy; Subramanian, Venkataramanan; Wosten, Han A. B.; Xu, Jianping; Eastwood, Daniel C.; Foster, Gary D.; Sonnenberg, Anton S. M.; Cullen, Dan; de Vries, Ronald P.; Lundell, Taina; Hibbett, David S.; Henrissat, Bernard; Burton, Kerry S.; Kerrigan, Richard W.; Challen, Michael P.; Grigoriev, Igor V.; Martin, Francis

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche 双孢蘑菇蘑菇双孢蘑菇的基因组序列揭示了控制对腐殖质丰富的生态位的适应机制

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2012-10-08

359

OAAI

Morin, Emmanuelle; Kohler, Annegret; Baker, Adam R.; Foulongne-Oriol, Marie; Lombard, Vincent; Nagy, Laszlo G.; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Brun, Annick; Aerts, Andrea L.; Bailey, Andrew M.; Billette, Christophe; Coutinho, Pedro M.; Deakin, Greg; Doddapaneni, Harshavardhan; Floudas, Dimitrios; Grimwood, Jane; Hilden, Kristiina; Kuees, Ursula; LaButti, Kurt M.; Lapidus, Alla; Lindquist, Erika A.; Lucas, Susan M.; Murat, Claude; Riley, Robert W.; Salamov, Asaf A.; Schmutz, Jeremy; Subramanian, Venkataramanan; Wosteng, Han A. B.; Xu, Jianping; Eastwood, Daniel C.; Foster, Gary D.; Sonnenberg, Anton S. M.; Cullen, Dan; de Vries, Ronald P.; Lundell, Taina; Hibbett, David S.; Henrissat, Bernard; Burton, Kerry S. j; Kerrigan, Richard W.; Challen, Michael P.; Grigoriev, Igor V.; Martin, Francis

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis Ceriporiopsis subvermispora和Phanerochaete chrysosporium的比较基因组学为选择性木质素分解提供了见识

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2012-03-20

258

OAAI

Fernandez-Fueyo, Elena; Ruiz-Duenas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Hibbett, David S.; Canessa, Paulo; Larrondo, Luis F.; James, Tim Y.; Seelenfreund, Daniela; Lobos, Sergio; Polanco, Ruben; Tello, Mario; Honda, Yoichi; Watanabe, Takahito; Watanabe, Takashi; San, Ryu Jae; Kubicek, Christian P.; Schmoll, Monika; Gaskell, Jill; Hammel, Kenneth E.; St John, Franz J.; Vanden Wymelenberg, Amber; Sabat, Grzegorz; BonDurant, Sandra Splinter; Syed, Khajamohiddin; Yadav, Jagjit S.; Doddapaneni, Harshavardhan; Subramanian, Venkataramanan; Lavin, Jose L.; Oguiza, Jose A.; Perez, Gumer; Pisabarro, Antonio G.; Ramirez, Lucia; Santoyo, Francisco; Master, Emma; Coutinho, Pedro M.; Henrissat, Bernard; Lombard, Vincent; Magnuson, Jon Karl; Kuees, Ursula; Hori, Chiaki; Igarashi, Kiyohiko; Samejima, Masahiro; Held, Benjamin W.; Barry, Kerrie W.; LaButti, Kurt M.; Lapidus, Alla; Lindquist, Erika A.; Lucas, Susan M.; Riley, Robert; Salamov, Asaf A.; Hoffmeister, Dirk; Schwenk, Daniel; Hadar, Yitzhak; Yarden, Oded; de Vries, Ronald P.; Wiebenga, Ad; Stenlid, Jan; Eastwood, Daniel; Grigoriev, Igor V.; Berka, Randy M.; Blanchette, Robert A.; Kersten, Phil; Martinez, Angel T.; Vicuna, Rafael; Cullen, Dan

Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2011-07-01

OAAI

Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Michael; BonDurant, Sandra Splinter; Sabat, Grzegorz; Ralph, John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Grigoriev, Igor V.; Kersten, Philip J.; Cullen, Dan

Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2010-06-01

209

OAAI

Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Michael; Sabat, Grzegorz; Ralph, John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Martinez, Diego; Grigoriev, Igor; Kersten, Philip J.; Cullen, Dan

Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2009-06-15

139

OAAI

Vanden Wymelenberg, Amber; Gaskell, Jill; Mozuch, Mike; Kersten, Phil; Sabat, Grzegorz; Martinez, Diego; Cullen, Dan

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion 木材腐烂真菌Postia胎盘的基因组，转录组和分泌组分析支持木质纤维素转化的独特机制

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2009-02-10

529

OAAI

Martinez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Ruiz-Duenas, Francisco J.; Martinez, Angel T.; Kersten, Phil; Hammel, Kenneth E.; Wymelenberg, Amber Vanden; Gaskell, Jill; Lindquist, Erika; Sabat, Grzegorz; BonDurant, Sandra Splinter; Larrondo, Luis F.; Canessa, Paulo; Vicuna, Rafael; Yadav, Jagjit; Doddapaneni, Harshavardhan; Subramanian, Venkataramanan; Pisabarro, Antonio G.; Lavin, Jose L.; Oguiza, Jose A.; Master, Emma; Henrissat, Bernard; Coutinho, Pedro M.; Harris, Paul; Magnuson, Jon Karl; Baker, Scott E.; Bruno, Kenneth; Kenealy, William; Hoegger, Patrik J.; Kuees, Ursula; Ramaiya, Preethi; Lucash, Susan; Salamov, Asaf; Shapiro, Harris; Tu, Hank; Chee, Christine L.; Misra, Monica; Xie, Gary; Teter, Sarah; Yaver, Debbie; James, Tim; Mokrejs, Martin; Pospisek, Martin; Grigoriev, Igor V.; Brettin, Thomas; Rokhsar, Dan; Berka, Randy; Cullen, Dan

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (vol 26, pg 553, 2008)

NATURE BIOTECHNOLOGY

IF41.7

2008-10-01

OAAI

Martinez, Diego; Berka, Randy M.; Henrissat, Bernard; Saloheimo, Markku; Arvas, Mikko; Baker, Scott E.; Chapman, Jarod; Chertkov, Olga; Coutinho, Pedro M.; Cullen, Dan; Danchin, Etienne G. J.; Grigoriev, Igor V.; Harris, Paul; Jackson, Melissa; Kubicek, Christian P.; Han, Cliff S.; Ho, Isaac; Larrondo, Luis F.; de Leon, Alfredo Lopez; Magnuson, Jon K.; Merino, Sandy; Misra, Monica; Nelson, Beth; Putnam, Nicholas; Robbertse, Barbara; Salamov, Asaf A.; Schmoll, Monika; Terry, Astrid; Thayer, Nina; Westerholm-Parvinen, Ann; Schoch, Conrad L.; Yao, Jian; Barabote, Ravi; Nelson, Mary Anne; Detter, Chris; Bruce, David; Kuske, Cheryl R.; Xie, Gary; Richardson, Paul; Rokhsar, Daniel S.; Lucas, Susan M.; Rubin, Edward M.; Dunn-Coleman, Nigel; Ward, Michael; Brettin, Thomas S.

研究方向