Karol Szlachta - Publications, H-index & Citations

Karol Szlachta

St Jude Children's Research Hospital

16H指数

79论文数

1.7K被引数

收录论文 20

发表时间

The landscape of structural variation in pediatric cancer 儿科癌症的结构变异景观

Cancer Cell

IF44.5

2026-03-12

OAAI

Robert Greenhalgh; Samuel W. Brady; Wentao Yang; Diane A. Flasch; Michael N. Edmonson; Nadezhda V. Terekhanova; Yanling Liu; Jian Wang; Karol A. Szlachta; Liqing Tian; Daniel K. Putnam; Delaram Rahbarinia; Pandurang Kolekar; Xin Zhou; Daniela S. Gerhard; Xiaotu Ma; Jinghui Zhang

Genomic profiling of circulating tumor DNA for childhood cancers

LEUKEMIA

IF13.4

2024-11-10

PREAI

Lei, Shaohua; Jia, Sujuan; Takalkar, Sunitha; Chang, Ti-Cheng; Ma, Xiaotu; Szlachta, Karol; Xu, Ke; Cheng, Zhongshan; Hui, Yawei; Koo, Selene C.; Mead, Paul E.; Gao, Qingsong; Kumar, Priyadarshini; Bailey, Colin P.; Sunny, Jobin; Pappo, Alberto S.; Federico, Sara M.; Robinson, Giles W.; Gajjar, Amar; Rubnitz, Jeffrey E.; Jeha, Sima; Pui, Ching-Hon; Inaba, Hiroto; Wu, Gang; Klco, Jeffery M.; Tatevossian, Ruth G.; Mullighan, Charles G.

Seq2Karyotype (S2K): A method for deconvoluting heterogeneity of copy number alterations using single-sample whole-genome sequencing data

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Pu, Limeng; Szlachta, Karol; Valentine, Virginia; Chen, Xiaolong; Wang, Jian; Kennetz, Dennis; Putnam, Daniel; Natarajan, Sivaraman; Dong, Li; Look, Thomas; Wlodarski, Marcin; Wang, Lu; Burden, Steven; Easton, John; Chen, Xiang; Zhang, Jinghui

Convergent evolution and multi-wave clonal invasion in H3 K27-altered diffuse midline gliomas treated with a PDGFR inhibitor

ACTA NEUROPATHOLOGICA COMMUNICATIONS

IF5.7

2022-05-31

OAAI

Arunachalam, Sasi; Szlachta, Karol; Brady, Samuel W.; Ma, Xiaotu; Ju, Bensheng; Shaner, Bridget; Mulder, Heather L.; Easton, John; Raphael, Benjamin J.; Myers, Matthew; Tinkle, Christopher; Allen, Sariah J.; Orr, Brent A.; Wetmore, Cynthia J.; Baker, Suzanne J.; Zhang, Jinghui

SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

GENOME BIOLOGY

IF9.4

2021-01-25

OAAI

Davis, Eric M.; Sun, Yu; Liu, Yanling; Kolekar, Pandurang; Shao, Ying; Szlachta, Karol; Mulder, Heather L.; Ren, Dongren; Rice, Stephen V.; Wang, Zhaoming; Nakitandwe, Joy; Gout, Alexander M.; Shaner, Bridget; Hall, Salina; Robison, Leslie L.; Pounds, Stanley; Klco, Jeffery M.; Easton, John; Ma, Xiaotu

Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X

NATURE GENETICS

IF31.8

2020-07-06

OAAI

Liu, Yu; Li, Chunliang; Shen, Shuhong; Chen, Xiaolong; Szlachta, Karol; Edmonson, Michael N.; Shao, Ying; Ma, Xiaotu; Hyle, Judith; Wright, Shaela; Ju, Bensheng; Rusch, Michael C.; Liu, Yanling; Li, Benshang; Macias, Michael; Tian, Liqing; Easton, John; Qian, Maoxiang; Yang, Jun J.; Hu, Shaoyan; Look, A. Thomas; Zhang, Jinghui

Topoisomerase II contributes to DNA secondary structure-mediated double-stranded breaks

NUCLEIC ACIDS RESEARCH

IF13.1

2020-06-05

OAAI

Szlachta, Karol; Manukyan, Arkadi; Raimer, Heather M.; Singh, Sandeep; Salamon, Anita; Guo, Wenying; Lobachev, Kirill S.; Wang, Yuh-Hwa

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

GENOME BIOLOGY

IF9.4

2020-05-28

OAAI

Tian, Liqing; Li, Yongjin; Edmonson, Michael N.; Zhou, Xin; Newman, Scott; McLeod, Clay; Thrasher, Andrew; Liu, Yu; Tang, Bo; Rusch, Michael C.; Easton, John; Ma, Jing; Davis, Eric; Trull, Austyn; Michael, J. Robert; Szlachta, Karol; Mullighan, Charles; Baker, Suzanne J.; Downing, James R.; Ellison, David W.; Zhang, Jinghui

Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2020-03-01

OAAI

Singh, Sandeep; Szlachta, Karol; Manukyan, Arkadi; Raimer, Heather M.; Dinda, Manikarna; Bekiranov, Stefan; Wang Yuh-Hwa

CNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolution

BMC GENOMICS

IF3.7

2020-01-08

OAAI

Szlachta, Karol; Raimer, Heather M.; Comeau, Laurey D.; Wang, Yuh-Hwa

Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome

NUCLEIC ACIDS RESEARCH

IF13.1

2018-12-21

OAAI

Huckaby, Adam C.; Granum, Claire S.; Carey, Maureen A.; Szlachta, Karol; Al-Barghouthi, Basel; Wang, Yuh-Hwa; Guler, Jennifer L.

CRISPR knockout screening identifies combinatorial drug targets in pancreatic cancer and models cellular drug response

NATURE COMMUNICATIONS

IF15.7

2018-10-15

OAAI

Szlachta, Karol; Kuscu, Cem; Tufan, Turan; Adair, Sara J.; Shang, Stephen; Michaels, Alex D.; Mullen, Matthew G.; Fischer, Natasha Lopes; Yang, Jiekun; Liu, Limin; Trivedi, Prasad; Stelow, Edward B.; Stukenberg, P. Todd; Parsons, J. Thomas; Bauer, Todd W.; Adli, Mazhar

Genomic analysis of DNA repair genes and androgen signaling in prostate cancer

BMC CANCER

IF3.4

2018-10-10

OAAI

Jividen, Kasey; Kedzierska, Katarzyna Z.; Yang, Chun-Song; Szlachta, Karol; Ratan, Aakrosh; Paschal, Bryce M.

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human 替代性DNA二级结构形成影响人类RNA聚合酶II启动子近端暂停

GENOME BIOLOGY

IF9.4

2018-07-12

OAAI

Szlachta, Karol; Thys, Ryan G.; Atkin, Naomi D.; Pierce, Levi C. T.; Bekiranov, Stefan; Wang, Yuh-Hwa

CRISPR-STOP: gene silencing through base-editing-induced nonsense mutations

NATURE METHODS

IF32.1

2017-06-05

307

PREAI

Kuscu, Cem; Parlak, Mahmut; Tufan, Turan; Yang, Jiekun; Szlachta, Karol; Wei, Xiaolong; Mammadov, Rashad; Adli, Mazhar

Nature of electronic conductivity in olivine-like glasses and nanomaterials of Li2O-FeO-V2O5-P2O5 system

SOLID STATE IONICS

IF3.3

2017-04-01

PREAI

Pietrzak, Tomasz K.; Michalski, Przemyslaw P.; Kruk, Paulina E.; Slubowska, Wioleta; Szlachta, Karol; Duda, Przemyslaw; Nowinski, Jan L.; Wasiucionek, Marek; Garbarczyk, Jerzy E.

Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9

NATURE COMMUNICATIONS

IF15.7

2017-03-14

207

OAAI

Qin, Peiwu; Parlak, Mahmut; Kuscu, Cem; Bandaria, Jigar; Mir, Mustafa; Szlachta, Karol; Singh, Ritambhara; Darzacq, Xavier; Yildiz, Ahmet; Adli, Mazhar

Crystal structure of equine serum albumin in complex with cetirizine reveals a novel drug binding site

MOLECULAR IMMUNOLOGY

IF3

2016-03-01

OAAI

Handing, Katarzyna B.; Shabalin, Ivan G.; Szlachta, Karol; Majorek, Karolina A.; Minor, Wladek

Basal ganglia echogenicity in tauopathies

JOURNAL OF NEURAL TRANSMISSION

IF4

2014-09-10

OAAI

Sadowski, Krzysztof; Serafin-Krol, Magorzata; Szlachta, Karol; Friedman, Andrzej