Hongyi Xin - Publications, H-index & Citations

辛弘毅 (Hongyi Xin)

shanghai jiao tong university

19H指数

59论文数

1.8K被引数

收录论文 19

发表时间

Atlas of predicted protein complex structures across kingdoms 跨界的预测蛋白质复合物结构图谱

Nature Communications

IF15.7

2026-03-25

OAAI

Xianzhi Qi; Cheng Ye; Jianqiang Liang; Shimin Wen; Yuanyuan Li; Kai Ding; Yongfu Hao; Junjie Fei; Weian Mao; Liupeng Li; Zhiyu Lin; Yichong Shen; Hongjie Zhu; Yayun Hu; Rui Zhang; Pengli Ji; Yafei Lu; Bonan Liu; Han Wang; Yuxuan Chen; Zhenguo Ma; Peiyuan Yang; Xinyu Xu; Junlong Wu; Youyuan Zhu; Qiaosha Zou; Wencheng Zhu; Kelu Yao; Shuya Li; Hongyi Xin; Daji Ergu; Jianyang Zeng; Zhi-Xiong Jim Xiao; Chunhua Shen; Ying Cai; Yong Yi; Dacheng Ma

Simultaneously infer cell pseudotime, velocity field, and gene interaction from multi-branch scRNA-seq data with scPN 同时利用scPN从多分支单细胞RNA测序数据中推断细胞伪时间、速度场和基因相互作用

NAR GENOMICS AND BIOINFORMATICS

IF2.8

2025-12-01

PREAI

Zhou, Zhen; Li, Jiachen; Xin, Hongyi; Pan, Xiaoyong; Shen, Hong-Bin

A novel deep learning system for STEMI prognostic prediction from multi-sequence cardiac magnetic resonance 基于多序列心脏磁共振的STEMI预后预测的深度学习系统

Science Bulletin

IF21.1

2025-11-17

OAAI

Yifan Chen; Meng Jiang; Chao Xia; Hang Zhao; Panpan Ke; Sheng Chen; Heng Ge; Keran Li; Xu Wang; Yufei Wang; Yezi Chai; Qiming Liu; Zhengyu Tao; Yuyan Lyu; Yani Wu; Ao Shi; Yang Liu; Hongyi Xin; Yu Zhong; Wei Zhang

Large language model answers medical questions about standard pathology reports 大型语言模型回答有关标准病理报告的医学问题

FRONTIERS IN MEDICINE

IF3

2024-09-18

OAAI

Wang, Anqi; Zhou, Jieli; Zhang, Peng; Cao, Haotian; Xin, Hongyi; Xu, Xinyun; Zhou, Haiyang

Semantic-Based Implicit Feature Transform for Few-Shot Classification

INTERNATIONAL JOURNAL OF COMPUTER VISION

IF9.3

2024-05-30

PREAI

Pan, Mei-Hong; Xin, Hong-Yi; Shen, Hong-Bin

Spatial transcriptomics reveals heterogeneity of histological subtypes between lepidic and acinar lung adenocarcinoma

CLINICAL AND TRANSLATIONAL MEDICINE

IF6.8

2024-02-06

OAAI

Xie, Linshan; Kong, Hui; Yu, Jinjie; Sun, Mengting; Lu, Shaohua; Zhang, Yong; Hu, Jie; Du, Fang; Lian, Qiuyu; Xin, Hongyi; Zhou, Jian; Wang, Xiangdong; Powell, Charles A.; Hirsch, Fred R.; Bai, Chunxue; Song, Yuanlin; Yin, Jun; Yang, Dawei

CRCS: An automatic image processing pipeline for hormone level analysis of Cushing's disease

METHODS

IF4.3

2024-02-01

PREAI

Li, Haiyue; Xie, Jing; Song, Jialin; Jin, Cheng; Xin, Hongyi; Pan, Xiaoyong; Ke, Jing; Yuan, Ye; Shen, Hongbin; Ning, Guang

Deep learning of endoscopic features for the assessment of neoadjuvant therapy response in locally advanced rectal cancer

ASIAN JOURNAL OF SURGERY

IF3.8

2023-09-01

OAAI

Wang, Anqi; Zhou, Jieli; Wang, Gang; Zhang, Beibei; Xin, Hongyi; Zhou, Haiyang

Few-shot classification with task-adaptive semantic feature learning 基于任务自适应语义特征学习的少镜头分类

PATTERN RECOGNITION

IF7.6

2023-09-01

PREAI

Pan, Mei-Hong; Xin, Hong-Yi; Xia, Chun-Qiu; Shen, Hong -Bin

The microbiota regulates hematopoietic stem and progenitor cell development by mediating inflammatory signals in the niche

CELL REPORTS

IF6.9

2023-02-01

OAAI

Zhong, Dan; Jiang, Haowei; Zhou, Chengzhuo; Ahmed, Abrar; Li, Hongji; Wei, Xiaona; Lian, Qiuyu; Tastemel, Melodi; Xin, Hongyi; Ge, Mei; Zhang, Chenhong; Jing, Lili

TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics TIST: 空间转录组学的转录组和组织病理学图像综合分析

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2022-12-19

OAAI

Shan, Yiran; Zhang, Qian; Guo, Wenbo; Wu, Yanhong; Miao, Yuxin; Xin, Hongyi; Lian, Qiuyu; Gu, Jin

SODA: Detecting COVID-19 in Chest X-Rays With Semi-Supervised Open Set Domain Adaptation

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2022-09-01

OAAI

Zhou, Jieli; Jing, Baoyu; Wang, Zeya; Xin, Hongyi; Tong, Hanghang

GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing Gmm-demux: 单细胞测序中的样品解复用，多重检测，实验计划和新型细胞类型验证

GENOME BIOLOGY

IF9.4

2020-07-30

OAAI

Xin, Hongyi; Lian, Qiuyu; Jiang, Yale; Luo, Jiadi; Wang, Xinjun; Erb, Carla; Xu, Zhongli; Zhang, Xiaoyi; Heidrich-O'Hare, Elisa; Yan, Qi; Duerr, Richard H.; Chen, Kong; Chen, Wei

BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data

NUCLEIC ACIDS RESEARCH

IF13.1

2020-05-07

OAAI

Wang, Xinjun; Sun, Zhe; Zhang, Yanfu; Xu, Zhongli; Xin, Hongyi; Huang, Heng; Duerr, Richard H.; Chen, Kong; Ding, Ying; Chen, Wei

Deep-learning-based prediction of late age-related macular degeneration progression

NATURE MACHINE INTELLIGENCE

IF23.9

2020-02-14

OAAI

Yan, Qi; Weeks, Daniel E.; Xin, Hongyi; Swaroop, Anand; Chew, Emily Y.; Huang, Heng; Ding, Ying; Chen, Wei

A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies

NATURE COMMUNICATIONS

IF15.7

2019-04-09

OAAI

Sun, Zhe; Chen, Li; Xin, Hongyi; Jiang, Yale; Huang, Qianhui; Cillo, Anthony R.; Tabib, Tracy; Kolls, Jay K.; Bruno, Tullia C.; Lafyatis, Robert; Vignali, Dario A. A.; Chen, Kong; Ding, Ying; Hu, Ming; Chen, Wei

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

BMC GENOMICS

IF3.7

2018-05-09

125

OAAI

Kim, Jeremie S.; Cali, Damla Senol; Xin, Hongyi; Lee, Donghyuk; Ghose, Saugata; Alser, Mohammed; Hassan, Hasan; Ergin, Oguz; Alkan, Can; Mutlu, Onur

Fast and accurate mapping of Complete Genomics reads 快速准确地映射完整的基因组学读数

METHODS

IF4.3

2015-06-01

OAAI