Aalt D. J. van Dijk - Publications, H-index & Citations

Aalt D. J. van Dijk

University of Amsterdam

42H指数

154论文数

7.8K被引数

收录论文 55

发表时间

Deep learning-based semantic matching of cis-regulatory DNA sequences facilitates the prediction of gene function 基于深度学习的顺式调控DNA序列语义匹配促进了基因功能预测

Nature Plants

IF13.6

2026-02-18

PREAI

Tianyi Li; Hui Xu; Mingrui Suo; Mingchi Xu; Xiangxin Li; Luyuan Yang; Revocatus Bahitwa; Shouzhen Teng; Baoxing Song; Aalt Dirk Jan van Dijk; Hai Wang

Embracing AI in plant biology: a new era of discovery

Plant Molecular Biology

IF3.8

2026-01-21

PREAI

Dong Xu; Yuko Makita; Aalt Dirk Jan van Dijk

Genome-based prediction of recombination within and between plant species: insights from Brassica oleracea recombinant populations and an interspecific tomato cross (Solanum lycopersicum × S. pimpinellifolium)

BMC Plant Biology

IF4.8

2026-01-09

OAAI

Mauricio Peñuela; Guusje Bonnema; Ben Auxier; Klaas Bouwmeester; Arend van Peer; Henk J. Schouten; Sander Peters; Aalt Dirk Jan van Dijk; Yuling Bai; Dick de Ridder

Brassica diversity through the lens of polyploidy: genomic evolution, introgression, and homoeologous exchange 从多倍化的角度审视芸薹属多样性：基因组进化、渐渗和同源异型交换

Horticultural Plant Journal

IF6.2

2025-08-23

OAAI

Tianpeng Wang; Aalt D.J. van Dijk; Xu Cai; Jian Wu; Guusje Bonnema; Xiaowu Wang

Penalized factorial regression as a flexible and computationally attractive reaction norm model for prediction in the presence of GxE 惩罚因子回归作为一种灵活且计算上具有吸引力的反应规范模型，用于在存在GxE时的预测。

THEORETICAL AND APPLIED GENETICS

IF4.2

2025-03-28

OAAI

Avagyan, Vahe; Boer, Martin P.; Solin, Junita; van Dijk, Aalt D. J.; Bustos-Korts, Daniela; van Rossum, Bart-Jan; Ramakers, Jip J. C.; van Eeuwijk, Fred; Kruijer, Willem

Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction 蛋白质大语言模型在酶分类号预测中的比较评估

BMC BIOINFORMATICS

IF3.3

2025-02-27

OAAI

Capela, Joao; Zimmermann-Kogadeeva, Maria; van Dijk, Aalt D. J.; de Ridder, Dick; Dias, Oscar; Rocha, Miguel

Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2024-10-30

OAAI

Thoris, Kai; Marrero, Miguel Correa; Fiers, Martijn; Lai, Xuelei; Zahn, Iris E.; Jiang, Xiaobing; Mekken, Mark; Busscher, Stefan; Jansma, Stuart; Nanao, Max; de Ridder, Dick; van Dijk, Aalt D. J.; Angenent, Gerco C.; Immink, Richard G. H.; Zubieta, Chloe; Bemer, Marian

Evolutionary origin and functional investigation of the widely conserved plant PEBP gene STEPMOTHER OF FT AND TFL1 (SMFT)

PLANT JOURNAL

IF5.7

2024-10-04

OAAI

Bellinazzo, Francesca; Bigas, Judit Nadal; Hogers, Rensco A. H.; Kodde, Jan; van der Wal, Froukje; Kokkinopoulou, Pinelopi; Duijts, Kilian T. M.; Angenent, Gerco C.; van Dijk, Aalt D. J.; van Velzen, Robin; Immink, Richard G. H.

Contribution of homoeologous exchange to domestication of polyploid Brassica

GENOME BIOLOGY

IF9.4

2024-08-27

OAAI

Wang, Tianpeng; van Dijk, Aalt D. J.; Zhao, Ranze; Bonnema, Guusje; Wang, Xiaowu

A catalogue of recombination coldspots in interspecific tomato hybrids

PLOS GENETICS

IF3.7

2024-07-01

OAAI

Fuentes, Roven Rommel; Nieuwenhuis, Ronald; Chouaref, Jihed; Hesselink, Thamara; van Dooijeweert, Willem; van den Broeck, Hetty C.; Schijlen, Elio; Schouten, Henk J.; Bai, Yuling; Fransz, Paul; Stam, Maike; de Jong, Hans; Trivino, Sara Diaz; de Ridder, Dick; van Dijk, Aalt D. J.; Peters, Sander A.

Root branching under high salinity requires auxin-independent modulation of LATERAL ORGAN BOUNDARY DOMAIN 16 function

PLANT CELL

IF11.6

2023-12-23

OAAI

Zhang, Yanxia; Li, Yiyun; de Zeeuw, Thijs; Duijts, Kilian; Kawa, Dorota; Lamers, Jasper; Munzert, Kristina S.; Li, Hongfei; Zou, Yutao; Meyer, A. Jessica; Yan, Jinxuan; Verstappen, Francel; Wang, Yixuan; Gijsberts, Tom; Wang, Jielin; Gigli-Bisceglia, Nora; Engelsdorf, Timo; van Dijk, Aalt D. J.; Testerink, Christa

Protein interaction mapping reveals widespread targeting of development-related host transcription factors by phytoplasma effectors

PLANT JOURNAL

IF5.7

2023-11-15

OAAI

Correa Marrero, Miguel; Capdevielle, Sylvain; Huang, Weijie; Al-Subhi, Ali M.; Busscher, Marco; Busscher-Lange, Jacqueline; van Der Wal, Froukje; de Ridder, Dick; van Dijk, Aalt D. J.; Hogenhout, Saskia A.; Immink, Richard G. H.

Interploidy Introgression Shaped Adaptation during the Origin and Domestication History of Brassica napus 甘蓝型油菜起源和驯化过程中的异倍体渗入型适应

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-09-14

OAAI

Wang, Tianpeng; van Dijk, Aalt D. J.; Bucher, Johan; Liang, Jianli; Wu, Jian; Bonnema, Guusje; Wang, Xiaowu

Detoxification of monoterpenes by a family of plant glycosyltransferases

PHYTOCHEMISTRY

IF3.4

2022-11-01

OAAI

Karlova, Rumyana; Busscher, Jeroen; Schempp, Florence M.; Buchhaupt, Markus; van Dijk, Aalt D. J.; Beekwilder, Jules

Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes 来自Tanacetum的单个脂质转移蛋白对倍半萜的细胞外积累显示出不同的特异性

PLANT MOLECULAR BIOLOGY

IF3.8

2022-10-18

OAAI

Kashkooli, Arman Beyraghdar; van Dijk, Aalt D. J.; Bouwmeester, Harro; van der Krol, Alexander

Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics 社论: 人工智能和机器学习在植物基因组学和遗传学中的应用

FRONTIERS IN ARTIFICIAL INTELLIGENCE

IF4.7

2022-06-27

OAAI

van Dijk, Aalt D. J.; Shiu, Shin-Han; de Ridder, Dick

Domestication Shapes Recombination Patterns in Tomato

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2021-10-01

OAAI

Fuentes, Roven Rommel; de Ridder, Dick; van Dijk, Aalt D. J.; Peters, Sander A.

A THP-1 Cell Line-Based Exploration of Immune Responses Toward Heat-Treated BLG

FRONTIERS IN NUTRITION

IF5.1

2021-01-13

OAAI

Deng, Ying; Govers, Coen; ter Beest, Ellen; van Dijk, Aalt-Jan; Hettinga, Kasper; Wichers, Harry J.

The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase 樟树的santalene合酶: 从单萜合酶重建倍半萜合酶

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

IF3

2020-11-01

OAAI

Di Girolamo, Alice; Durairaj, Janani; van Houwelingen, Adele; Verstappen, Francel; Bosch, Dirk; Cankar, Katarina; Bouwmeester, Harro; de Ridder, Dick; van Dijk, Aalt D. J.; Beekwilder, Jules

Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes 从植物中获得生物塑料的新途径: 阐明丹参毛状体的甲基紫苏酸生物合成途径

JOURNAL OF EXPERIMENTAL BOTANY

IF5.7

2020-02-24

OAAI

Jongedijk, Esmer; Muller, Sebastian; van Dijk, Aalt D. J.; Schijlen, Elio; Champagne, Antoine; Boutry, Marc; Levisson, Mark; van der Krol, Sander; Bouwmeester, Harro; Beekwilder, Jules

研究方向