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Michael Riffle

university of oxford

30H指数
113论文数
3.2K被引数
收录论文 36
发表时间
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Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-12-01
err0
PREAI
errStraub, Gwenneth; Ananth, Varun; Fondrie, William E.; Hsu, Chris; Klaproth-Andrade, Daniela; Pominova, Marina; Riffle, Michael; Sanders, Justin; Wen, Bo; Xu, Lingwen; Yilmaz, Melih; Maccoss, Michael J.; Oh, Sewoong; Bittremieux, Wout; Noble, William Stafford
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The E3 ubiquitin ligase MGRN1 targets melanocortin receptors MC1R and MC4R via interactions with transmembrane adapters
errJOURNAL OF CELL SCIENCE
IF3.6
err2025-12-01
err1
errOAAI
errParashara, Pragya; Gao, Lei; Riglos, Alyssa; Lartey, Dorothy; Sidhu, Sonia B.; Marks, Tessa; Williams, Carys; Siauw, Grace; Lee, Kai-Jing; Ostrem, Anna I. L.; Siebold, Christian; Riffle, Michael; Kinnebrew, Maia; Gunn, Teresa M.; Kong, Jennifer H.
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Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomicsCarafe支持高质量基于计算机的谱库生成，用于数据无关采集蛋白质组学。
errNature Communications
IF15.7
err2025-11-06
err0
errOAAI
errBo Wen; Chris Hsu; David Shteynberg; Wen-Feng Zeng; Michael Riffle; Alexis Chang; Miranda C. Mudge; Brook L. Nunn; Brendan X. MacLean; Matthew D. Berg; Judit Villén; Michael J. MacCoss; William S. Noble
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A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data用于数据独立的采集质谱数据从头测序的transformer模型
errNature Methods
IF32.1
err2025-07-01
err0
errOAAI
errJustin Sanders; Bo Wen; Paul A. Rudnick; Richard S. Johnson; Christine C. Wu; Michael Riffle; Sewoong Oh; Michael J. MacCoss; William Stafford Noble
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Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment利用诱捕法评估串联质谱分析中错误发现率控制的评估
errNature Methods
IF32.1
err2025-06-16
err0
errOAAI
errBo Wen; Jack Freestone; Michael Riffle; Michael J. MacCoss; William S. Noble; Uri Keich
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Limelight: An Open, Web-Based Tool for Visualizing, Sharing, and Analyzing Mass Spectrometry Data from DDA PipelinesLimelight: 一种基于Web的开放工具，用于可视化，共享和分析来自DDA管道的质谱数据
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-03-01
err0
errOAAI
errRiffle, Michael; Zelter, Alex; Jaschob, Daniel; Hoopmann, Michael R.; Faivre, Danielle A.; Moritz, Robert L.; Davis, Trisha N.; Maccoss, Michael J.; Isoherranen, Nina
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Reproductive resilience: pathways to gametogenic success in Montipora capitata after bleaching
errSCIENTIFIC REPORTS
IF3.9
err2024-11-13
err2
errOAAI
errTimmins-Schiffman, E.; Duselis, E.; Brown, T.; Axworthy, J. B.; Backstrom, C. H.; Riffle, M.; Dilworth, J.; Kenkel, C. D.; Rodrigues, L. J.; Nunn, B. L.; Padilla-Gamino, J. L.
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Detection and Quantification of Drug-Protein Adducts in Human Liver
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-10-23
err1
PREAI
errZelter, Alex; Riffle, Michael; Shteynberg, David D.; Zhong, Guo; Riddle, Ellen B.; Hoopmann, Michael R.; Jaschob, Daniel; Moritz, Robert L.; Davis, Trisha N.; MacCoss, Michael J.; Isoherranen, Nina
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A Framework for Quality Control in Quantitative Proteomics
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-09-09
err6
PREAI
errTsantilas, Kristine A.; Merrihew, Gennifer E.; Robbins, Julia E.; Johnson, Richard S.; Park, Jea; Plubell, Deanna L.; Canterbury, Jesse D.; Huang, Eric; Riffle, Michael; Sharma, Vagisha; MacLean, Brendan X.; Eckels, Josh; Wu, Christine C.; Bereman, Michael S.; Spencer, Sandra E.; Hoofnagle, Andrew N.; MacCoss, Michael J.
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A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline
errANALYTICAL CHEMISTRY
IF6.7
err2024-05-02
err1
errOAAI
errEcheverri, Juan Camilo Rojas; Hause, Frank; Iacobucci, Claudio; Ihling, Christian H.; Taenzler, Dirk; Shulman, Nicholas; Riffle, Michael; MacLean, Brendan X.; Sinz, Andrea
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Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-09-08
err84
errOAAI
errHeil, Lilian R.; Damoc, Eugen; Arrey, Tabiwang N.; Pashkova, Anna; Denisov, Eduard; Petzoldt, Johannes; Peterson, Amelia C.; Hsu, Chris; Searle, Brian C.; Shulman, Nicholas; Riffle, Michael; Connolly, Brian; Maclean, Brendan X.; Remes, Philip M.; Senko, Michael W.; Stewart, Hamish I.; Hock, Christian; Makarov, Alexander A.; Hermanson, Daniel; Zabrouskov, Vlad; Wu, Christine C.; Maccoss, Michael J.
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Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline使用Kojak 2.0改进了交联质谱数据的分析，通过整合到反式蛋白质组学流程中而得到改进
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-01-11
err7
errOAAI
errHoopmann, Michael R.; Shteynberg, David D.; Zelter, Alex; Riffle, Michael; Lyon, Andrew S.; Agard, David A.; Luan, Qing; Nolen, Brad J.; MacCoss, Michael J.; Davis, Trisha N.; Moritz, Robert L.
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Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load
errJOURNAL OF CELL BIOLOGY
IF6.4
err2022-03-30
err8
errOAAI
errFlores, Rachel L.; Peterson, Zachary E.; Zelter, Alex; Riffle, Michael; Asbury, Charles L.; Davis, Trisha N.
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Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry
errANALYTICAL CHEMISTRY
IF6.7
err2022-02-21
err10
errOAAI
errRiffle, Michael; Hoopmann, Michael R.; Jaschob, Daniel; Zhong, Guo; Moritz, Robert L.; MacCoss, Michael J.; Davis, Trisha N.; Isoherranen, Nina; Zelter, Alex
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Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes
errISME JOURNAL
IF10
err2019-09-06
err24
errOAAI
errMikan, Molly P.; Harvey, H. Rodger; Timmins-Schiffman, Emma; Riffle, Michael; May, Damon H.; Salter, Ian; Noble, William S.; Nunn, Brook L.
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Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2018-12-11
err7
errOAAI
errRiffle, Michael; Jaschob, Daniel; Zelter, Alex; Davis, Trisha N.
err分享
err收藏
Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments人类Ska复合物和Ndc80复合物相互作用，形成一个承重组件，加强动粒-微管附件
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2018-02-27
err67
errOAAI
errHelgeson, Luke A.; Zelter, Alex; Riffle, Michael; MacCoss, Michael J.; Asbury, Charles L.; Davis, Trisha N.
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Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2017-08-11
err24
errOAAI
errTimmins-Schiffman, Emma B.; Crandall, Grace A.; Vadopalas, Brent; Riffle, Michael E.; Nunn, Brook L.; Roberts, Steven B.
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Direct measurement of the strength of microtubule attachment to yeast centrosomes
errMOLECULAR BIOLOGY OF THE CELL
IF2.7
err2017-07-07
err14
errOAAI
errFong, Kimberly K.; Sarangapani, Krishna K.; Yusko, Erik C.; Riffle, Michael; Llauro, Aida; Graczyk, Beth; Davis, Trisha N.; Asbury, Charles L.
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The Ndc80 complex bridges two Dam1 complex rings
errELIFE
IF0
err2017-02-13
err52
errOAAI
errKim, Jae Ook; Zelter, Alex; Umbreit, Neil T.; Bollozos, Athena; Riffle, Michael; Johnson, Richard; MacCoss, Michael J.; Asbury, Charles L.; Davis, Trisha N.
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研究方向

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合作学者
合作期刊
J
John R. Yates
H 指数: 188 · 论文数: 1.5K
A
Andrej Săli
H 指数: 129 · 论文数: 684
D
David A. Agard
H 指数: 107 · 论文数: 557
W
William Stafford Noble
H 指数: 107 · 论文数: 614
C
Charles Boone
H 指数: 107 · 论文数: 414
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