Fotis A. Baltoumas - Publications, H-index & Citations

Fotis A. Baltoumas

pennsylvania state university

16H指数

56论文数

791被引数

收录论文 23

发表时间

nf-core/proteinfamilies: A scalable pipeline for the generation of protein families

GigaScience

IF3.9

2026-01-21

OAAI

Evangelos Karatzas; Martin Beracochea; Fotis A Baltoumas; Eleni Aplakidou; Lorna Richardson; James A Fellows Yates; Daniel Lundin; nf-core community

B cell tolerance checkpoint function in multiple sclerosis and transient CD52 depletion

Journal of Neuroimmunology

IF2.5

2026-01-05

PREAI

Anastasia Alexaki; Fotis Baltoumas; Dimitrios Tzanetakos; Chrysoula Zografou; Theodoros Dame; Chrysoula Michaletou; Galini Kyriakaki; Aglaia G. Vakrakou; Maria Anagnostouli; Georgia Karadima; Marianna Tzanoudaki; Marinos C. Dalakas; Leonidas Stefanis; Konstantinos Kilidireas; Kevin C. O'Connor; Georgios Pavlopoulos; Panos Stathopoulos

Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life Chantzi, N.; Nayak, A.; Baltoumas, F.A.; Aplakidou, E.; Liew, S.W.; Galuh, J.E.; Patsakis, M.; Montgomery, A.; Moeckel, C.; Mouratidis, I.; 等. Quadrupia为生命之树中不同基因组提供了全面的G-四链体目录。Genome Res. 2025, 35, 2578–2600. [Google Scholar] [CrossRef] [PubMed]

GENOME RESEARCH

IF5.5

2025-11-01

PREAI

Chantzi, Nikol; Nayak, Akshatha; Baltoumas, Fotis A.; Aplakidou, Eleni; Liew, Shiau Wei; Galuh, Jesslyn Elvaretta; Patsakis, Michail; Montgomery, Austin; Moeckel, Camille; Mouratidis, Ioannis; Sazed, Saiful Arefeen; Guiblet, Wilfried; Karmiris-Obratanski, Panagiotis; Wang, Guliang; Zaravinos, Apostolos; Vasquez, Karen M.; Kwok, Chun Kit; Pavlopoulos, Georgios A.; Georgakopoulos-Soares, Ilias

metagRoot: a comprehensive database of protein families associated with plant root microbiomes metagRoot：一个与植物根系微生物组相关的蛋白质家族的综合数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2025-09-01

PREAI

Chasapi, Maria N.; Chasapi, Iro N.; Aplakidou, Eleni; Baltoumas, Fotis A.; Karatzas, Evangelos; Iliopoulos, Ioannis; Stravopodis, Dimitrios J.; Emiris, Ioannis Z.; Buluc, Aydin; Georgakopoulos-Soares, Ilias; Kyrpides, Nikos C.; Pavlopoulos, Georgios A.

MAFin: motif detection in multiple alignment files MAFin: 多重序列比对文件中的基序检测

BIOINFORMATICS

IF5.4

2025-03-19

OAAI

Patsakis, Michail; Provatas, Kimonas; Baltoumas, Fotis A.; Chantzi, Nikol; Mouratidis, Ioannis; Pavlopoulos, Georgios A.; Georgakopoulos-Soares, Ilias

Identification of the shortest species-specific oligonucleotide sequences

GENOME RESEARCH

IF5.5

2025-01-02

PREAI

Mouratidis, Ioannis; Konnaris, Maxwell A.; Chantzi, Nikol; Chan, Candace S. Y.; Patsakis, Michail; Provatas, Kimonas; Montgomery, Austin; Baltoumas, Fotis A.; Sha, Congzhou M.; Mareboina, Manvita; Pavlopoulos, Georgios A.; Chartoumpekis, Dionysios V.; Georgakopoulos-Soares, Ilias

VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers VISTA Enhancer browser: 组织特异性发育增强剂的更新数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2024-10-29

OAAI

Kosicki, Michael; Baltoumas, Fotis A.; Kelman, Guy; Boverhof, Joshua; Ong, Yeongshnn; Cook, Laura E.; Dickel, Diane E.; Pavlopoulos, Georgios A.; Pennacchio, Len A.; Visel, Axel

NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes NMPFamsDB: 来自微生物宏基因组和元基因组的新型蛋白质家族数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2023-10-09

OAAI

Baltoumas, Fotis A.; Karatzas, Evangelos; Liu, Sirui; Ovchinnikov, Sergey; Sofianatos, Yorgos; Chen, I-Min; Kyrpides, Nikos C.; Pavlopoulos, Georgios A.

Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration

genomics proteomics bioinformatics

IF2.8

2023-05-30

OAAI

Kokoli, Maria; Karatzas, Evangelos; Baltoumas, Fotis A.; Schneider, Reinhard; Pafilis, Evangelos; Paragkamian, Savvas; Doncheva, Nadezhda T.; Jensen, Lars Juhl; Pavlopoulos, Georgios A.

NucEnvDB: A Database of Nuclear Envelope Proteins and Their Interactions

MEMBRANES

IF3.6

2023-01-03

OAAI

Baltoumas, Fotis A.; Sofras, Dimitrios; Apostolakou, Avgi E.; Litou, Zoi I.; Iconomidou, Vassiliki A.

OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis

genomics proteomics bioinformatics

IF2.8

2021-10-06

OAAI

Baltoumas, Fotis A.; Zafeiropoulou, Sofia; Karatzas, Evangelos; Paragkamian, Savvas; Thanati, Foteini; Iliopoulos, Ioannis; Eliopoulos, Aristides G.; Schneider, Reinhard; Jensen, Lars Juhl; Pafilis, Evangelos; Pavlopoulos, Georgios A.

VICTOR: A visual analytics web application for comparing cluster sets

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2021-08-01

OAAI

Karatzas, Evangelos; Gkonta, Maria; Hotova, Joana; Baltoumas, Fotis A.; Kontou, Panagiota, I; Bobotsis, Christopher J.; Bagos, Pantelis G.; Pavlopoulos, Georgios A.

FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists FLAME: 一种用于多基因列表的功能和文献富集分析的网络工具

BIOLOGY-BASEL

IF3.5

2021-07-14

OAAI

Thanati, Foteini; Karatzas, Evangelos; Baltoumas, Fotis A.; Stravopodis, Dimitrios J.; Eliopoulos, Aristides G.; Pavlopoulos, Georgios A.

Arena3Dweb: interactive 3D visualization of multilayered networks

NUCLEIC ACIDS RESEARCH

IF13.1

2021-04-22

OAAI

Karatzas, Evangelos; Baltoumas, Fotis A.; Panayiotou, Nikolaos A.; Schneider, Reinhard; Pavlopoulos, Georgios A.

Extended Human G-Protein Coupled Receptor Network: Cell-Type-Specific Analysis of G-Protein Coupled Receptor Signaling Pathways 扩展的人类g蛋白偶联受体网络: g蛋白偶联受体信号通路的细胞类型特异性分析

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-11-27

PREAI

Apostolakou, Avgi E.; Baltoumas, Fotis A.; Stravopodis, Dimitrios J.; Iconomidou, Vassiliki A.

Delving into the amyloidogenic core of human leukocyte chemotactic factor 2

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2019-09-01

PREAI

Tsiolaki, Paraskevi L.; Nasi, Georgia, I; Baltoumas, Fotis A.; Fishman, Shannon; Tu, Ho-Chou; Iconomidou, Vassiliki A.

The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields 革兰氏阴性外膜建模器: 在四个力场中自动构建富含脂多糖的细菌外膜

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2019-03-19

PREAI

Baltoumas, Fotis A.; Hamodrakas, Stavros J.; Iconomidou, Vassiliki A.

Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1)

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

IF3.1

2018-12-12

PREAI

Triantaphyllopoulos, Kostas A.; Baltoumas, Fotis A.; Hamodrakas, Stavros J.

αCGRP, another amyloidogenic member of the CGRP family

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2018-07-01

PREAI

Tsiolaki, Paraskevi L.; Nasi, Georgia, I; Baltoumas, Fotis A.; Louros, Nikolaos N.; Magafa, Vassiliki; Hamodrakas, Stavros J.; Iconomidou, Vassiliki A.

Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2017-08-01

PREAI

Louros, Nikolaos N.; Tsiolaki, Paraskevi L.; Baltoumas, Fotis A.; Chryssikos, Georgios D.; Gionis, Vassilis; Hamodrakas, Stavros J.; Iconomidou, Vassiliki A.

研究方向