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Volkan Atalay

Loyola University Chicago

23H指数
109论文数
3.1K被引数
收录论文 13
发表时间
Mitochondrial one-carbon metabolism is required for TGF-β-induced glycine synthesis and fibrotic responses线粒体一碳代谢对于TGF-β诱导的甘氨酸合成和纤维化反应是必需的。
err2025-10-20
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errOAAI
errAngelo Y. Meliton; Kun Woo D. Shin; Rengül Cetin-Atalay; M. Volkan Atalay; Yufeng Tian; Jennifer C. Houpy Szafran; Takugo Cho; Kaitlyn A. Sun; Parker S. Woods; Obada R. Shamaa; Bohao Chen; Nickolai O. Dulin; Aliya N. Husain; Alexander Muir; Hardik Shah; Gökhan M. Mutlu; Robert B. Hamanaka
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mTOR signaling regulates multiple metabolic pathways in human lung fibroblasts after TGF-β and in pulmonary fibrosis
err2025-02-01
err0
PREAI
errShin, Kun Woo D.; Atalay, M. Volkan; Cetin-Atalay, Rengul; O'Leary, Erin M.; Glass, Mariel E.; Szafran, Jennifer C. Houpy; Woods, Parker S.; Meliton, Angelo Y.; Shamaa, Obada R.; Tian, Yufeng; Mutlu, Goekhan M.; Hamanaka, Robert B.
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ProFAB-open protein functional annotation benchmark
err2023-02-03
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PREAI
errOzdilek, A. Samet; Atakan, Ahmet; Ozsari, Goekhan; Acar, Aybar; Atalay, M. Volkan; Dogan, Tunca; Rifaioglu, Ahmet S.
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CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations
err2021-06-28
err20
errOAAI
errDogan, Tunca; Atas, Heval; Joshi, Vishal; Atakan, Ahmet; Rifaioglu, Ahmet Sureyya; Nalbat, Esra; Nightingale, Andrew; Saidi, Rabie; Volynkin, Vladimir; Zellner, Hermann; Cetin-Atalay, Rengul; Martin, Maria; Atalay, Volkan
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Crowdsourced mapping of unexplored target space of kinase inhibitors
err2021-06-03
err48
errOAAI
errCichonska, Anna; Ravikumar, Balaguru; Allaway, Robert J.; Wan, Fangping; Park, Sungjoon; Isayev, Olexandr; Li, Shuya; Mason, Michael; Lamb, Andrew; Tanoli, Ziaurrehman; Jeon, Minji; Kim, Sunkyu; Popova, Mariya; Capuzzi, Stephen; Zeng, Jianyang; Dang, Kristen; Koytiger, Gregory; Kang, Jaewoo; Wells, Carrow I.; Willson, Timothy M.; Oprea, Tudor I.; Schlessinger, Avner; Drewry, David H.; Stolovitzky, Gustavo; Wennerberg, Krister; Guinney, Justin; Aittokallio, Tero; Tan, Mehmet; Huang, Chih-Han; Shih, Edward S. C.; Chen, Tsai-Min; Wu, Chih-Hsun; Fang, Wei-Quan; Chen, Jhih-Yu; Hwang, Ming-Jing; Wang, Xiaokang; Ben Guebila, Marouen; Shamsaei, Behrouz; Singh, Sourav; Nguyen, Thin; Karimi, Mostafa; Wu, Di; Wang, Zhangyang; Shen, Yang; Ozturk, Hakime; Ozkirimli, Elif; Ozgur, Arzucan; Lim, Hansaim; Xie, Lei; Kanev, Georgi K.; Kooistra, Albert J.; Westerman, Bart A.; Terzopoulos, Panagiotis; Ntagiantas, Konstantinos; Fotis, Christos; Alexopoulos, Leonidas; Boeckaerts, Dimitri; Stock, Michiel; De Baets, Bernard; Briers, Yves; Luo, Yunan; Hu, Hailin; Peng, Jian; Dogan, Tunca; Rifaioglu, Ahmet S.; Atas, Heval; Atalay, Rengul Cetin; Atalay, Volkan; Martin, Maria J.; Lee, Junhyun; Yun, Seongjun; Kim, Bumsoo; Chang, Buru; Turu, Gabor; Misak, Adam; Szalai, Bence; Hunyady, Laszlo; Lienhard, Matthias; Prasse, Paul; Bachmann, Ivo; Ganzlin, Julia; Barel, Gal; Herwig, Ralf; Orsolic, Davor; Lucic, Bono; Stepanic, Visnja; Smuc, Tomislav
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In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC
err2020-08-15
err0
PREAI
errNalbat, Esra; Rifaioglu, Ahmet Sureyya; Dogan, Tunca; Martin, Maria Jesus; Cetin-Atalay, Rengul; Atalay, Volkan
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Data stream clustering: a review
err2020-07-21
err91
errOAAI
errZubaroglu, Alaettin; Atalay, Volkan
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DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations
err2020-01-01
err135
errOAAI
errRifaioglu, Ahmet Sureyya; Nalbat, Esra; Atalay, Volkan; Martin, Maria Jesus; Cetin-Atalay, Rengul; Dogan, Tunca
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screensCAFA challenge报告通过实验筛选改善了数百个基因的蛋白质功能预测和新功能注释
err2019-11-19
err264
errOAAI
errZhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R.; Lee, Alexandra J.; Kacsoh, Balint Z.; Crocker, Alex W.; Lewis, Kimberley A.; Georghiou, George; Nguyen, Huy N.; Hamid, Md Nafiz; Davis, Larry; Dogan, Tunca; Atalay, Volkan; Rifaioglu, Ahmet S.; Dalkiran, Alperen; Atalay, Rengul Cetin; Zhang, Chengxin; Hurto, Rebecca L.; Freddolino, Peter L.; Zhang, Yang; Bhat, Prajwal; Supek, Fran; Fernandez, Jose M.; Gemovic, Branislava; Perovic, Vladimir R.; Davidovic, Radoslav S.; Sumonja, Neven; Veljkovic, Nevena; Asgari, Ehsaneddin; Mofrad, Mohammad R. K.; Profiti, Giuseppe; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Boecker, Florian; Schoof, Heiko; Kahanda, Indika; Thurlby, Natalie; McHardy, Alice C.; Renaux, Alexandre; Saidi, Rabie; Gough, Julian; Freitas, Alex A.; Antczak, Magdalena; Fabris, Fabio; Wass, Mark N.; Hou, Jie; Cheng, Jianlin; Wang, Zheng; Romero, Alfonso E.; Paccanaro, Alberto; Yang, Haixuan; Goldberg, Tatyana; Zhao, Chenguang; Holm, Liisa; Toronen, Petri; Medlar, Alan J.; Zosa, Elaine; Borukhov, Itamar; Novikov, Ilya; Wilkins, Angela; Lichtarge, Olivier; Chi, Po-Han; Tseng, Wei-Cheng; Linial, Michal; Rose, Peter W.; Dessimoz, Christophe; Vidulin, Vedrana; Dzeroski, Saso; Sillitoe, Ian; Das, Sayoni; Lees, Jonathan Gill; Jones, David T.; Wan, Cen; Cozzetto, Domenico; Fa, Rui; Torres, Mateo; Vesztrocy, Alex Warwick; Rodriguez, Jose Manuel; Tress, Michael L.; Frasca, Marco; Notaro, Marco; Grossi, Giuliano; Petrini, Alessandro; Re, Matteo; Valentini, Giorgio; Mesiti, Marco; Roche, Daniel B.; Reeb, Jonas; Ritchie, David W.; Aridhi, Sabeur; Alborzi, Seyed Ziaeddin; Devignes, Marie-Dominique; Koo, Da Chen Emily; Bonneau, Richard; Gligorijevic, Vladimir; Barot, Meet; Fang, Hai; Toppo, Stefano; Lavezzo, Enrico; Falda, Marco; Berselli, Michele; Tosatto, Silvio C. E.; Carraro, Marco; Piovesan, Damiano; Rehman, Hafeez Ur; Mao, Qizhong; Zhang, Shanshan; Vucetic, Slobodan; Black, Gage S.; Jo, Dane; Suh, Erica; Dayton, Jonathan B.; Larsen, Dallas J.; Omdahl, Ashton R.; McGuffin, Liam J.; Brackenridge, Danielle A.; Babbitt, Patricia C.; Yunes, Jeffrey M.; Fontana, Paolo; Zhang, Feng; Zhu, Shanfeng; You, Ronghui; Zhang, Zihan; Dai, Suyang; Yao, Shuwei; Tian, Weidong; Cao, Renzhi; Chandler, Caleb; Amezola, Miguel; Johnson, Devon; Chang, Jia-Ming; Liao, Wen-Hung; Liu, Yi-Wei; Pascarelli, Stefano; Frank, Yotam; Hoehndorf, Robert; Kulmanov, Maxat; Boudellioua, Imane; Politano, Gianfranco; Di Carlo, Stefano; Benso, Alfredo; Hakala, Kai; Ginter, Filip; Mehryary, Farrokh; Kaewphan, Suwisa; Bjorne, Jari; Moen, Hans; Tolvanen, Martti E. E.; Salakoski, Tapio; Kihara, Daisuke; Jain, Aashish; Smuc, Tomislav; Altenhoff, Adrian; Ben-Hur, Asa; Rost, Burkhard; Brenner, Steven E.; Orengo, Christine A.; Jeffery, Constance J.; Bosco, Giovanni; Hogan, Deborah A.; Martin, Maria J.; O'Donovan, Claire; Mooney, Sean D.; Greene, Casey S.; Radivojac, Predrag; Friedberg, Iddo
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Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants
err2017-11-29
err12
PREAI
errRifaioglu, Ahmet Sureyya; Dogan, Tunca; Sarac, Omer Sinan; Ersahin, Tulin; Saidi, Rabie; Atalay, Mehmet Volkan; Martin, Maria Jesus; Cetin-Atalay, Rengul
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