David Emms - Publications, H-index & Citations

David Emms

university of oxford

24H指数

67论文数

1.4W被引数

收录论文 28

发表时间

Author Correction: OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability 作者更正：OrthoFinder：提高系统发育直系同源推断的准确性和可扩展性

Nature Methods

IF32.1

2026-08-26

OAAI

David M. Emms; Yi Liu; Laurence Belcher; Jonathan Holmes; Steven Kelly

OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability OrthoFinder：改进的具有增强准确性和可扩展性的系统发育直系同源推断

Nature Methods

IF32.1

2026-06-09

OAAI

David M. Emms; Yi Liu; Laurence Belcher; Jonathan Holmes; Steven Kelly

Annotating the genome at single-nucleotide resolution with DNA foundation models 在单核苷酸分辨率下注释基因组，使用DNA基础模型

Nature Methods

IF32.1

2025-10-29

OAAI

Bernardo P. de Almeida; Hugo Dalla-Torre; Guillaume Richard; Christopher Blum; Lorenz Hexemer; Maxence Gélard; Javier Mendoza-Revilla; Ziqi Tang; Frederikke I. Marin; David M. Emms; Priyanka Pandey; Stefan Laurent; Marie Lopez; Alexandre Laterre; Maren Lang; Uğur Şahin; Karim Beguir; Thomas Pierrot

Rubisco is evolving for improved catalytic efficiency and CO2 assimilation in plants

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-03-05

OAAI

Bouvier, Jacques W.; Emms, David M.; Kelly, Steven

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes GENESPACE跟踪多个基因组的感兴趣区域和基因拷贝数变异

ELIFE

IF0

2022-09-09

117

OAAI

Lovell, John T.; Sreedasyam, Avinash; Schranz, M. Eric; Wilson, Melissa; Carlson, Joseph W.; Harkess, Alex; Emms, David; Goodstein, David M.; Schmutz, Jeremy

The Quest for Orthologs orthology benchmark service in 2022 对正骨学基准服务2022年的探索

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-12

OAAI

Nevers, Yannis; Jones, Tamsin E. M.; Jyothi, Dushyanth; Yates, Bethan; Ferret, Meritxell; Portell-Silva, Laura; Codo, Laia; Cosentino, Salvatore; Marcet-Houben, Marina; Vlasova, Anna; Poidevin, Laetitia; Kress, Arnaud; Hickman, Mark; Persson, Emma; Pilizota, Ivana; Guijarro-Clarke, Cristina; Iwasaki, Wataru; Lecompte, Odile; Sonnhammer, Erik; Roos, David S.; Gabaldon, Toni; Thybert, David; Thomas, Paul D.; Hu, Yanhui; Emms, David M.; Bruford, Elspeth; Capella-Gutierrez, Salvador; Martin, Maria J.; Dessimoz, Christophe; Altenhoff, Adrian

SHOOT: phylogenetic gene search and ortholog inference 射击: 系统发育基因搜索和直系同源推断

GENOME BIOLOGY

IF9.4

2022-03-28

OAAI

Emms, David Mark; Kelly, Steven

Conditional stomatal closure in a fern shares molecular features with flowering plant active stomatal responses

CURRENT BIOLOGY

IF7.5

2021-10-01

OAAI

Plackett, Andrew R. G.; Emms, David M.; Kelly, Steven; Hetherington, Alistair M.; Langdale, Jane A.

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2021-03-19

OAAI

Bouvier, Jacques W.; Emms, David M.; Rhodes, Timothy; Bolton, Jai S.; Brasnett, Amelia; Eddershaw, Alice; Nielsen, Jochem R.; Unitt, Anastasia; Whitney, Spencer M.; Kelly, Steven

NO GAMETOPHORES 2 Is a Novel Regulator of the 2D to 3D Growth Transition in the Moss Physcomitrella patens

CURRENT BIOLOGY

IF7.5

2021-02-01

OAAI

Moody, Laura A.; Kelly, Steven; Clayton, Roxaana; Weeks, Zoe; Emms, David M.; Langdale, Jane A.

Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves

SCIENTIFIC REPORTS

IF3.9

2020-12-09

OAAI

Hetherington, Alexander J.; Emms, David M.; Kelly, Steven; Dolan, Liam

Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench

GENOME BIOLOGY AND EVOLUTION

IF2.8

2020-10-06

OAAI

Emms, David M.; Kelly, Steven

The Quest for Orthologs benchmark service and consensus calls in 2020

NUCLEIC ACIDS RESEARCH

IF13.1

2020-05-06

OAAI

Altenhoff, Adrian M.; Garrayo-Ventas, Javier; Cosentino, Salvatore; Emms, David; Glover, Natasha M.; Hernandez-Plaza, Ana; Nevers, Yannis; Sundesha, Vicky; Szklarczyk, Damian; Fernandez, Jose M.; Codo, Laia; Li Gelpi, Josep; Huerta-Cepas, Jaime; Iwasaki, Wataru; Kelly, Steven; Lecompte, Odile; Muffato, Matthieu; Martin, Maria J.; Capella-Gutierrez, Salvador; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe

Multiple Metabolic Innovations and Losses Are Associated with Major Transitions in Land Plant Evolution

CURRENT BIOLOGY

IF7.5

2020-05-01

OAAI

Cannell, Naomi; Emms, David M.; Hetherington, Alexander J.; MacKay, John; Kelly, Steven; Dolan, Liam; Sweetlove, Lee J.

Agricultural Selection of Wheat Has Been Shaped by Plant-Microbe Interactions

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-02-06

OAAI

Tkacz, Andrzej; Pini, Francesco; Turner, Thomas R.; Bestion, Eloine; Simmonds, James; Howell, Phil; Greenland, Andy; Cheema, Jitender; Emms, David M.; Uauy, Cristobal; Poole, Philip S.

Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2019-11-21

OAAI

Costello, Rona; Emms, David; Kelly, Steven

OrthoFinder: phylogenetic orthology inference for comparative genomics OrthoFinder: 比较基因组学的系统发育正字学推断

GENOME BIOLOGY

IF9.4

2019-11-14

3.7K

OAAI

Emms, David M.; Kelly, Steven

Fuzzy Evaluations of Image Segmentations

IEEE TRANSACTIONS ON FUZZY SYSTEMS

IF11.9

2018-08-01

PREAI

Ziolko, Bartosz; Emms, David; Ziolko, Mariusz

STRIDE: Species Tree Root Inference from Gene Duplication Events STRIDE: 从基因复制事件推断物种树的根

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2017-09-26

188

OAAI

Emms, David M.; Kelly, Steven

An Alternative Strategy for Trypanosome Survival in the Mammalian Bloodstream Revealed through Genome and Transcriptome Analysis of the Ubiquitous Bovine Parasite Trypanosoma (Megatrypanum) theileri

GENOME BIOLOGY AND EVOLUTION

IF2.8

2017-08-14

OAAI

Kelly, Steven; Ivens, Alasdair; Mott, G. Adam; O'Neill, Ellis; Emms, David; Macleod, Olivia; Voorheis, Paul; Tyler, Kevin; Clark, Matthew; Matthews, Jacqueline; Matthews, Keith; Carrington, Mark

研究方向