Nicholas P. Schafer - Publications, H-index & Citations

Nicholas P. Schafer

Rice University

25H指数

78论文数

2.4K被引数

收录论文 36

发表时间

The physical and evolutionary energy landscapes of devolved protein sequences corresponding to pseudogenes 对应于假基因的转移蛋白质序列的物理和进化能量景观

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-05-13

OAAI

Jaafari, Hana; Bueno, Carlos; Schafer, Nicholas P.; Martin, Jonathan; Morcos, Faruck; Wolynes, Peter G.

Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2023-05-05

OAAI

Sahin, Cagla; Motso, Aikaterini; Gu, Xinyu; Feyrer, Hannes; Lama, Dilraj; Arndt, Tina; Rising, Anna; Gese, Genis Valentin; Haellberg, B. Martin; Marklund, Erik. G.; Schafer, Nicholas P.; Petzold, Katja; Teilum, Kaare; Wolynes, Peter G.; Landreh, Michael

Vectorial channeling as a mechanism for translational control by functional prions and condensates

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-11-18

OAAI

Gu, Xinyu; Schafer, Nicholas P.; Wolynes, Peter G.

Frustrated peptide chains at the fibril tip control the kinetics of growth of amyloid-β fibrils 原纤维尖端受挫的肽链控制淀粉样蛋白-β 原纤维的生长动力学

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-09-13

OAAI

Xu, Yuechuan; Knapp, Kaitlin; Le, Kyle N.; Schafer, Nicholas P.; Safari, Mohammad S.; Davtyan, Aram; Wolynes, Peter G.; Vekilov, Peter G.

Cys-labeling kinetics of membrane protein GlpG: a role for specific SDS binding and micelle changes?

BIOPHYSICAL JOURNAL

IF3.1

2021-09-01

OAAI

Otzen, Daniel E.; Pedersen, Jannik Nedergaard; Somavarapu, Arun Kumar; Clement, Anders; Ji, Ming; Petersen, Emil Hartvig; Pedersen, Jan Skov; Urban, Sinisa; Schafer, Nicholas P.

Rapid assessment of T-cell receptor specificity of the immune repertoire 快速评估免疫组库的T细胞受体特异性

NATURE COMPUTATIONAL SCIENCE

IF18.3

2021-05-24

OAAI

Lin, Xingcheng; George, Jason T.; Schafer, Nicholas P.; Chau, Kevin Ng; Birnbaum, Michael E.; Clementi, Cecilia; Onuchic, Jose N.; Levine, Herbert

Frustration and Direct-Coupling Analyses to Predict Formation and Function of Adeno-Associated Virus

BIOPHYSICAL JOURNAL

IF3.1

2021-02-01

OAAI

Thadani, Nicole N.; Zhou, Qin; Gamas, Kiara Reyes; Butler, Susan; Bueno, Carlos; Schafer, Nicholas P.; Morcos, Faruck; Wolynes, Peter G.; Suh, Junghae

Surveying biomolecular frustration at atomic resolution

NATURE COMMUNICATIONS

IF15.7

2020-11-23

OAAI

Chen, Mingchen; Chen, Xun; Schafer, Nicholas P.; Clementi, Cecilia; Komives, Elizabeth A.; Ferreiro, Diego U.; Wolynes, Peter G.

Exploring the F-actin/CPEB3 interaction and its possible role in the molecular mechanism of long-term memory

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-08-26

OAAI

Gu, Xinyu; Schafer, Nicholas P.; Wang, Qian; Song, Sarah S.; Chen, Mingchen; Waxham, M. Neal; Wolynes, Peter G.

Protein Structure Prediction in CASP13 Using AWSEM-Suite

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2020-05-12

PREAI

Jin, Shikai; Chen, Mingchen; Chen, Xun; Bueno, Carlos; Lu, Wei; Schafer, Nicholas P.; Lin, Xingcheng; Onuchic, Jose N.; Wolynes, Peter G.

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes

NUCLEIC ACIDS RESEARCH

IF13.1

2020-05-08

OAAI

Jin, Shikai; Contessoto, Vinicius G.; Chen, Mingchen; Schafer, Nicholas P.; Lu, Wei; Chen, Xun; Bueno, Carlos; Hajitaheri, Arya; Sirovetz, Brian J.; Davtyan, Aram; Papoian, Garegin A.; Tsai, Min-Yeh; Wolynes, Peter G.

The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-04-30

OAAI

Liman, James; Bueno, Carlos; Eliaz, Yossi; Schafer, Nicholas P.; Waxham, M. Neal; Wolynes, Peter G.; Levine, Herbert; Cheung, Margaret S.

Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-02-06

OAAI

Chen, Xun; Chen, Mingchen; Schafer, Nicholas P.; Wolynes, Peter G.

Braiding topology and the energy landscape of chromosome organization proteins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-12-30

OAAI

Krepel, Dana; Davtyan, Aram; Schafer, Nicholas P.; Wolynes, Peter G.; Onuchic, Jose N.

Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-08-27

OAAI

Wang, Qian; Chen, Mingchen; Schafer, Nicholas P.; Bueno, Carlos; Song, Sarah S.; Hudmon, Andy; Wolynes, Peter G.; Waxham, M. Neal; Cheung, Margaret S.

Steady, Symmetric, and Reversible Growth and Dissolution of Individual Amyloid-β Fibrils

ACS CHEMICAL NEUROSCIENCE

IF3.9

2019-05-17

PREAI

Xu, Yuechuan; Safari, Mohammad S.; Ma, Wenchuan; Schafer, Nicholas P.; Wolynes, Peter G.; Vekilov, Peter G.

Forging tools for refining predicted protein structures

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-04-18

OAAI

Lin, Xingcheng; Schafer, Nicholas P.; Lu, Wei; Jin, Shikai; Chen, Xun; Chen, Mingchen; Onuchic, Jose N.; Wolynes, Peter G.

Oleuropein derivatives from olive fruit extracts reduce -synuclein fibrillation and oligomer toxicity

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2019-03-01

OAAI

Mohammad-Beigi, Hossein; Aliakbari, Farhang; Sahin, Cagla; Lomax, Charlotte; Tawfike, Ahmed; Schafer, Nicholas P.; Amiri-Nowdijeh, Alireza; Eskandari, Hoda; Moller, Ian Max; Hosseini-Mazinani, Mehdi; Christiansen, Gunna; Ward, Jane L.; Morshedi, Dina; Otzen, Daniel E.

Energy landscape underlying spontaneous insertion and folding of an alpha-helical transmembrane protein into a bilayer

NATURE COMMUNICATIONS

IF15.7

2018-11-23

OAAI

Lu, Wei; Schafer, Nicholas P.; Wolynes, Peter G.

Template-Guided Protein Structure Prediction and Using Optimized Folding Landscape Force Fields

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2018-09-21

OAAI

Chen, Mingchen; Lin, Xingcheng; Lu, Wei; Schafer, Nicholas P.; Onuchic, Jose N.; Wolynes, Peter G.

研究方向